RNA–Protein interactions for RNA: ENST00000472988.5

SMARCD3-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,654 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-209ENST00000472988 IQGAP3Q86VI3 1631 aa28.29■■■□□ 2.12
SMARCD3-209ENST00000472988 ARHGEF40Q8TER5 1519 aa28.28■■■□□ 2.12
SMARCD3-209ENST00000472988 MROH1Q8NDA8 1641 aa28.27■■■□□ 2.12
SMARCD3-209ENST00000472988 RNF17Q9BXT8 1623 aaKnown RBP28.26■■■□□ 2.11
SMARCD3-209ENST00000472988 FAM135AQ9P2D6 1515 aa28.24■■■□□ 2.11
SMARCD3-209ENST00000472988 CLSPNQ9HAW4 1339 aa28.24■■■□□ 2.11
SMARCD3-209ENST00000472988 NUP155O75694 1391 aa28.23■■■□□ 2.11
SMARCD3-209ENST00000472988 REREQ9P2R6 1566 aa28.23■■■□□ 2.11
SMARCD3-209ENST00000472988 MPHOSPH9Q99550 1183 aa28.23■■■□□ 2.11
SMARCD3-209ENST00000472988 PRDM15P57071 1507 aaPredicted RBP28.22■■■□□ 2.11
SMARCD3-209ENST00000472988 SIGLEC1Q9BZZ2 1709 aa28.21■■■□□ 2.11
SMARCD3-209ENST00000472988 ATP10AO60312 1499 aa28.19■■■□□ 2.1
SMARCD3-209ENST00000472988 VWDEQ8N2E2 1590 aa28.19■■■□□ 2.1
SMARCD3-209ENST00000472988 KIF3BO15066 747 aa28.16■■■□□ 2.1
SMARCD3-209ENST00000472988 SLC4A1APQ9BWU0 796 aaKnown RBP28.16■■■□□ 2.1
SMARCD3-209ENST00000472988 CEP152O94986 1710 aa28.15■■■□□ 2.1
SMARCD3-209ENST00000472988 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.14■■■□□ 2.1
SMARCD3-209ENST00000472988 ZEB1P37275 1124 aaPredicted RBP28.13■■■□□ 2.09
SMARCD3-209ENST00000472988 TET3O43151 1660 aa28.12■■■□□ 2.09
SMARCD3-209ENST00000472988 AGLP35573 1532 aa28.11■■■□□ 2.09
SMARCD3-209ENST00000472988 FOXD1Q16676 465 aa28.1■■■□□ 2.09
SMARCD3-209ENST00000472988 E9PCH4 1651 aa28.09■■■□□ 2.09
SMARCD3-209ENST00000472988 PKD2Q13563 968 aa28.07■■■□□ 2.08
SMARCD3-209ENST00000472988 KANK1Q14678 1352 aa28.05■■■□□ 2.08
SMARCD3-209ENST00000472988 ZC3H13Q5T200 1668 aaKnown RBP28.04■■■□□ 2.08
SMARCD3-209ENST00000472988 ANKRD30BQ9BXX2 1392 aa28.04■■■□□ 2.08
SMARCD3-209ENST00000472988 LMTK2Q8IWU2 1503 aa28.03■■■□□ 2.08
SMARCD3-209ENST00000472988 SIN3AQ96ST3 1273 aa28.02■■■□□ 2.08
SMARCD3-209ENST00000472988 ABCC3O15438 1527 aa28.01■■■□□ 2.08
SMARCD3-209ENST00000472988 EFCAB6Q5THR3 1501 aa28.01■■■□□ 2.08
SMARCD3-209ENST00000472988 CAMSAP1Q5T5Y3 1602 aa28■■■□□ 2.07
SMARCD3-209ENST00000472988 GGT6Q6P531 493 aa28■■■□□ 2.07
SMARCD3-209ENST00000472988 SPHKAPQ2M3C7 1700 aa27.98■■■□□ 2.07
SMARCD3-209ENST00000472988 NEUROD1Q13562 356 aa27.94■■■□□ 2.06
SMARCD3-209ENST00000472988 PLA2R1Q13018 1463 aa27.92■■■□□ 2.06
SMARCD3-209ENST00000472988 RPRD2Q5VT52 1461 aaKnown RBP27.92■■■□□ 2.06
SMARCD3-209ENST00000472988 CLTCQ00610 1675 aaKnown RBP27.92■■■□□ 2.06
SMARCD3-209ENST00000472988 CFAP65Q6ZU64 1925 aaKnown RBP27.89■■■□□ 2.06
SMARCD3-209ENST00000472988 TRPM2O94759 1503 aa27.88■■■□□ 2.05
SMARCD3-209ENST00000472988 WASHC2CQ9Y4E1 1318 aa27.88■■■□□ 2.05
SMARCD3-209ENST00000472988 NPATQ14207 1427 aa27.86■■■□□ 2.05
SMARCD3-209ENST00000472988 PTPRTO14522 1441 aa27.84■■■□□ 2.05
SMARCD3-209ENST00000472988 CLTCL1P53675 1640 aa27.83■■■□□ 2.04
SMARCD3-209ENST00000472988 TONSLQ96HA7 1378 aa27.81■■■□□ 2.04
SMARCD3-209ENST00000472988 MLECQ14165 292 aa27.81■■■□□ 2.04
SMARCD3-209ENST00000472988 ARID4BQ4LE39 1312 aaPredicted RBP27.8■■■□□ 2.04
SMARCD3-209ENST00000472988 CCDC144AA2RUR9 1427 aa27.8■■■□□ 2.04
SMARCD3-209ENST00000472988 ARHGAP31Q2M1Z3 1444 aa27.8■■■□□ 2.04
SMARCD3-209ENST00000472988 PREX1Q8TCU6 1659 aa27.8■■■□□ 2.04
SMARCD3-209ENST00000472988 PPP6R1Q9UPN7 881 aa27.79■■■□□ 2.04
SMARCD3-209ENST00000472988 TIMELESSQ9UNS1 1208 aa27.78■■■□□ 2.04
SMARCD3-209ENST00000472988 FER1L4A9Z1Z3 1794 aa27.77■■■□□ 2.04
SMARCD3-209ENST00000472988 UGGT1Q9NYU2 1555 aa27.76■■■□□ 2.03
SMARCD3-209ENST00000472988 MROH2AA6NES4 1674 aa27.76■■■□□ 2.03
SMARCD3-209ENST00000472988 SYNMO15061 1565 aa27.75■■■□□ 2.03
SMARCD3-209ENST00000472988 KIF1BO60333 1816 aa27.73■■■□□ 2.03
SMARCD3-209ENST00000472988 NOS1P29475 1434 aa27.73■■■□□ 2.03
SMARCD3-209ENST00000472988 CNTLNQ9NXG0 1405 aa27.71■■■□□ 2.03
SMARCD3-209ENST00000472988 PIK3C2BO00750 1634 aa27.71■■■□□ 2.03
SMARCD3-209ENST00000472988 ERVK-7P63135 1459 aa27.67■■■□□ 2.02
SMARCD3-209ENST00000472988 L3MBTL2Q969R5 705 aa27.66■■■□□ 2.02
SMARCD3-209ENST00000472988 SPATA31D1Q6ZQQ2 1576 aa27.66■■■□□ 2.02
SMARCD3-209ENST00000472988 SPATA31E1Q6ZUB1 1445 aa27.64■■■□□ 2.02
SMARCD3-209ENST00000472988 C3P01024 1663 aa27.64■■■□□ 2.02
SMARCD3-209ENST00000472988 MADDQ8WXG6 1647 aa27.64■■■□□ 2.02
SMARCD3-209ENST00000472988 NEURL4Q96JN8 1562 aa27.64■■■□□ 2.01
SMARCD3-209ENST00000472988 ADAMTSL3P82987 1691 aa27.63■■■□□ 2.01
SMARCD3-209ENST00000472988 PPP1R15AO75807 674 aaPredicted RBP27.63■■■□□ 2.01
SMARCD3-209ENST00000472988 ESF1Q9H501 851 aaKnown RBP27.62■■■□□ 2.01
SMARCD3-209ENST00000472988 ZMYM3Q14202 1370 aa27.61■■■□□ 2.01
SMARCD3-209ENST00000472988 RIMS1Q86UR5 1692 aaKnown RBP27.6■■■□□ 2.01
SMARCD3-209ENST00000472988 ADGRB3O60242 1522 aa27.6■■■□□ 2.01
SMARCD3-209ENST00000472988 MYO5BQ9ULV0 1848 aa27.59■■■□□ 2.01
SMARCD3-209ENST00000472988 FBXO31Q5XUX0 539 aaPredicted RBP27.59■■■□□ 2.01
SMARCD3-209ENST00000472988 IFT172Q9UG01 1749 aa27.59■■■□□ 2.01
SMARCD3-209ENST00000472988 RGL3Q3MIN7 710 aa27.53■■■□□ 2
SMARCD3-209ENST00000472988 TMEM131LA2VDJ0 1609 aa27.52■■■□□ 2
SMARCD3-209ENST00000472988 PPLO60437 1756 aa27.51■■■□□ 2
SMARCD3-209ENST00000472988 UHRF1BP1Q6BDS2 1440 aa27.48■■□□□ 1.99
SMARCD3-209ENST00000472988 DCAF11Q8TEB1 546 aa27.48■■□□□ 1.99
SMARCD3-209ENST00000472988 SLC52A1Q9NWF4 448 aa27.48■■□□□ 1.99
SMARCD3-209ENST00000472988 IDI1Q13907 227 aa27.47■■□□□ 1.99
SMARCD3-209ENST00000472988 NBPF8Q3BBV2 869 aa27.47■■□□□ 1.99
SMARCD3-209ENST00000472988 TRPM1Q7Z4N2 1603 aa27.44■■□□□ 1.98
SMARCD3-209ENST00000472988 TNRQ92752 1358 aa27.44■■□□□ 1.98
SMARCD3-209ENST00000472988 CEBPAP49715 358 aaPredicted RBP27.43■■□□□ 1.98
SMARCD3-209ENST00000472988 KDM2AQ9Y2K7 1162 aa27.43■■□□□ 1.98
SMARCD3-209ENST00000472988 PRAG1Q86YV5 1406 aa27.43■■□□□ 1.98
SMARCD3-209ENST00000472988 CHGAP10645 457 aaKnown RBP27.43■■□□□ 1.98
SMARCD3-209ENST00000472988 KDM5AP29375 1690 aaKnown RBP27.42■■□□□ 1.98
SMARCD3-209ENST00000472988 MYOM2P54296 1465 aa27.41■■□□□ 1.98
SMARCD3-209ENST00000472988 NEXMIFQ5QGS0 1516 aa27.41■■□□□ 1.98
SMARCD3-209ENST00000472988 UBR1Q8IWV7 1749 aa27.4■■□□□ 1.98
SMARCD3-209ENST00000472988 MYO3AQ8NEV4 1616 aa27.4■■□□□ 1.98
SMARCD3-209ENST00000472988 ZNF326Q5BKZ1 582 aaKnown RBP27.4■■□□□ 1.98
SMARCD3-209ENST00000472988 RALGAPBQ86X10 1494 aa27.39■■□□□ 1.97
SMARCD3-209ENST00000472988 A2ML1A8K2U0 1454 aa27.36■■□□□ 1.97
SMARCD3-209ENST00000472988 NLRP1Q9C000 1473 aa27.35■■□□□ 1.97
SMARCD3-209ENST00000472988 PLPPR3Q6T4P5 718 aa27.34■■□□□ 1.97
SMARCD3-209ENST00000472988 NRXN1Q9ULB1 1477 aa27.33■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms