RNA–Protein interactions for RNA: ENST00000472217.1

USF1-204, Transcript of upstream transcription factor 1, humanhuman

TSL 2

Gene USF1, Length 1,097 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-204ENST00000472217 ZNF142P52746 1687 aaPredicted RBP14.16□□□□□ -0.14
USF1-204ENST00000472217 RNF17Q9BXT8 1623 aaKnown RBP14.14□□□□□ -0.15
USF1-204ENST00000472217 EIF2AK4Q9P2K8 1649 aaKnown RBP14.14□□□□□ -0.15
USF1-204ENST00000472217 FGD6Q6ZV73 1430 aa14.14□□□□□ -0.15
USF1-204ENST00000472217 CEP170BQ9Y4F5 1589 aaPredicted RBP14.13□□□□□ -0.15
USF1-204ENST00000472217 TCOF1Q13428 1488 aaKnown RBP14.12□□□□□ -0.15
USF1-204ENST00000472217 SHANK2Q9UPX8 1470 aa14.12□□□□□ -0.15
USF1-204ENST00000472217 CAMSAP1Q5T5Y3 1602 aa14.12□□□□□ -0.15
USF1-204ENST00000472217 FBXO41Q8TF61 875 aa14.12□□□□□ -0.15
USF1-204ENST00000472217 NCOA1Q15788 1441 aa14.12□□□□□ -0.15
USF1-204ENST00000472217 DNMT1P26358 1616 aaKnown RBP14.12□□□□□ -0.15
USF1-204ENST00000472217 ABCC5O15440 1437 aa14.11□□□□□ -0.15
USF1-204ENST00000472217 DMRT2Q9Y5R5 561 aa14.11□□□□□ -0.15
USF1-204ENST00000472217 PZPP20742 1482 aa14.11□□□□□ -0.15
USF1-204ENST00000472217 PTPRTO14522 1441 aa14.1□□□□□ -0.15
USF1-204ENST00000472217 DAPK1P53355 1430 aa14.1□□□□□ -0.15
USF1-204ENST00000472217 MROH1Q8NDA8 1641 aa14.1□□□□□ -0.15
USF1-204ENST00000472217 ZC3H13Q5T200 1668 aaKnown RBP14.1□□□□□ -0.15
USF1-204ENST00000472217 WASHC2CQ9Y4E1 1318 aa14.1□□□□□ -0.15
USF1-204ENST00000472217 DUOX2Q9NRD8 1548 aa14.1□□□□□ -0.15
USF1-204ENST00000472217 ABCC3O15438 1527 aa14.08□□□□□ -0.16
USF1-204ENST00000472217 KIF15Q9NS87 1388 aa14.08□□□□□ -0.16
USF1-204ENST00000472217 A2ML1A8K2U0 1454 aa14.07□□□□□ -0.16
USF1-204ENST00000472217 PLA2R1Q13018 1463 aa14.07□□□□□ -0.16
USF1-204ENST00000472217 FBXO31Q5XUX0 539 aaPredicted RBP14.07□□□□□ -0.16
USF1-204ENST00000472217 CERKQ8TCT0 537 aa14.06□□□□□ -0.16
USF1-204ENST00000472217 CEP152O94986 1710 aa14.06□□□□□ -0.16
USF1-204ENST00000472217 TNRQ92752 1358 aa14.06□□□□□ -0.16
USF1-204ENST00000472217 ERBINQ96RT1 1412 aa14.05□□□□□ -0.16
USF1-204ENST00000472217 PRDM15P57071 1507 aaPredicted RBP14.05□□□□□ -0.16
USF1-204ENST00000472217 RRP7BPQ9NSQ0 103 aa14.03□□□□□ -0.16
USF1-204ENST00000472217 NCKAP5LQ9HCH0 1330 aa14.03□□□□□ -0.16
USF1-204ENST00000472217 SPATA31D1Q6ZQQ2 1576 aa14.03□□□□□ -0.16
USF1-204ENST00000472217 DEPDC5O75140 1603 aa14.03□□□□□ -0.16
USF1-204ENST00000472217 LTBP4Q8N2S1 1624 aa14.02□□□□□ -0.16
USF1-204ENST00000472217 NLRP1Q9C000 1473 aa14.01□□□□□ -0.17
USF1-204ENST00000472217 ANKRD30AQ9BXX3 1397 aa14.01□□□□□ -0.17
USF1-204ENST00000472217 PKD2Q13563 968 aa14.01□□□□□ -0.17
USF1-204ENST00000472217 CHIC2Q9UKJ5 165 aa14.01□□□□□ -0.17
USF1-204ENST00000472217 POLR1AO95602 1720 aaPredicted RBP14.01□□□□□ -0.17
USF1-204ENST00000472217 ERVK-7P63135 1459 aa14□□□□□ -0.17
USF1-204ENST00000472217 UGGT1Q9NYU2 1555 aa14□□□□□ -0.17
USF1-204ENST00000472217 ADGRL2O95490 1459 aa13.99□□□□□ -0.17
USF1-204ENST00000472217 FAM50AQ14320 339 aaKnown RBP13.99□□□□□ -0.17
USF1-204ENST00000472217 NEURL4Q96JN8 1562 aa13.99□□□□□ -0.17
USF1-204ENST00000472217 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.96□□□□□ -0.17
USF1-204ENST00000472217 VWDEQ8N2E2 1590 aa13.96□□□□□ -0.17
USF1-204ENST00000472217 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.96□□□□□ -0.17
USF1-204ENST00000472217 ARHGAP31Q2M1Z3 1444 aa13.96□□□□□ -0.18
USF1-204ENST00000472217 ZNF335Q9H4Z2 1342 aaPredicted RBP13.95□□□□□ -0.18
USF1-204ENST00000472217 KANK1Q14678 1352 aa13.95□□□□□ -0.18
USF1-204ENST00000472217 LMTK2Q8IWU2 1503 aa13.95□□□□□ -0.18
USF1-204ENST00000472217 UBR1Q8IWV7 1749 aa13.94□□□□□ -0.18
USF1-204ENST00000472217 THEMISQ8N1K5 641 aaPredicted RBP13.94□□□□□ -0.18
USF1-204ENST00000472217 CFAP65Q6ZU64 1925 aaKnown RBP13.94□□□□□ -0.18
USF1-204ENST00000472217 IQSEC2Q5JU85 1478 aa13.93□□□□□ -0.18
USF1-204ENST00000472217 ANKRD50Q9ULJ7 1429 aa13.91□□□□□ -0.18
USF1-204ENST00000472217 EFCAB6Q5THR3 1501 aa13.91□□□□□ -0.18
USF1-204ENST00000472217 ANKLE2Q86XL3 938 aa13.91□□□□□ -0.18
USF1-204ENST00000472217 PPARGC1BQ86YN6 1023 aaKnown RBP13.91□□□□□ -0.18
USF1-204ENST00000472217 MED14O60244 1454 aa13.91□□□□□ -0.18
USF1-204ENST00000472217 PIK3C2BO00750 1634 aa13.9□□□□□ -0.18
USF1-204ENST00000472217 NPHP4O75161 1426 aaPredicted RBP13.9□□□□□ -0.19
USF1-204ENST00000472217 IQGAP1P46940 1657 aa13.89□□□□□ -0.19
USF1-204ENST00000472217 SYNMO15061 1565 aa13.89□□□□□ -0.19
USF1-204ENST00000472217 UNC13BO14795 1591 aa13.88□□□□□ -0.19
USF1-204ENST00000472217 ROCK1Q13464 1354 aa13.87□□□□□ -0.19
USF1-204ENST00000472217 SLIT1O75093 1534 aa13.87□□□□□ -0.19
USF1-204ENST00000472217 ARHGAP23Q9P227 1491 aa13.87□□□□□ -0.19
USF1-204ENST00000472217 TET3O43151 1660 aa13.86□□□□□ -0.19
USF1-204ENST00000472217 NOS1P29475 1434 aa13.86□□□□□ -0.19
USF1-204ENST00000472217 SCAF11Q99590 1463 aaKnown RBP13.86□□□□□ -0.19
USF1-204ENST00000472217 KDM5AP29375 1690 aaKnown RBP13.85□□□□□ -0.19
USF1-204ENST00000472217 CPS1P31327 1500 aa13.85□□□□□ -0.19
USF1-204ENST00000472217 GCC2Q8IWJ2 1684 aa13.85□□□□□ -0.19
USF1-204ENST00000472217 ITGAEP38570 1179 aa13.84□□□□□ -0.19
USF1-204ENST00000472217 RPRD2Q5VT52 1461 aaKnown RBP13.84□□□□□ -0.19
USF1-204ENST00000472217 IQGAP3Q86VI3 1631 aa13.82□□□□□ -0.2
USF1-204ENST00000472217 STRCP1A6NGW2 1772 aa13.82□□□□□ -0.2
USF1-204ENST00000472217 ADGRB3O60242 1522 aa13.82□□□□□ -0.2
USF1-204ENST00000472217 LTKP29376 864 aa13.82□□□□□ -0.2
USF1-204ENST00000472217 IDI1Q13907 227 aa13.82□□□□□ -0.2
USF1-204ENST00000472217 TMEM2Q9UHN6 1383 aa13.82□□□□□ -0.2
USF1-204ENST00000472217 E9PCH4 1651 aa13.81□□□□□ -0.2
USF1-204ENST00000472217 RRBP1Q9P2E9 1410 aaKnown RBP13.81□□□□□ -0.2
USF1-204ENST00000472217 UBAP1LF5GYI3 381 aa13.8□□□□□ -0.2
USF1-204ENST00000472217 TXNDC2Q86VQ3 553 aa13.8□□□□□ -0.2
USF1-204ENST00000472217 STAG3Q9UJ98 1225 aa13.8□□□□□ -0.2
USF1-204ENST00000472217 EID1Q9Y6B2 187 aa13.79□□□□□ -0.2
USF1-204ENST00000472217 SLC52A1Q9NWF4 448 aa13.77□□□□□ -0.21
USF1-204ENST00000472217 MYO5BQ9ULV0 1848 aa13.76□□□□□ -0.21
USF1-204ENST00000472217 LRRC7Q96NW7 1537 aa13.76□□□□□ -0.21
USF1-204ENST00000472217 NUP155O75694 1391 aa13.76□□□□□ -0.21
USF1-204ENST00000472217 TMEM131LA2VDJ0 1609 aa13.75□□□□□ -0.21
USF1-204ENST00000472217 ALKQ9UM73 1620 aa13.75□□□□□ -0.21
USF1-204ENST00000472217 ZFYVE9O95405 1425 aa13.73□□□□□ -0.21
USF1-204ENST00000472217 NAIPQ13075 1403 aa13.73□□□□□ -0.21
USF1-204ENST00000472217 XIRP1Q702N8 1843 aaKnown RBP13.71□□□□□ -0.21
USF1-204ENST00000472217 SCAF1Q9H7N4 1312 aaKnown RBP13.71□□□□□ -0.21
USF1-204ENST00000472217 TOM1O60784 492 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 115.2 ms