RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 NUP155O75694 1391 aa13.65□□□□□ -0.22
VPS52-216ENST00000471309 ZMYM4Q5VZL5 1548 aa13.64□□□□□ -0.23
VPS52-216ENST00000471309 ABCA6Q8N139 1617 aa13.64□□□□□ -0.23
VPS52-216ENST00000471309 ANKRD30BQ9BXX2 1392 aa13.64□□□□□ -0.23
VPS52-216ENST00000471309 FAM69CQ0P6D2 419 aa13.64□□□□□ -0.23
VPS52-216ENST00000471309 SIN3AQ96ST3 1273 aa13.64□□□□□ -0.23
VPS52-216ENST00000471309 PRDM15P57071 1507 aaPredicted RBP13.64□□□□□ -0.23
VPS52-216ENST00000471309 TSPOAP1O95153 1857 aa13.63□□□□□ -0.23
VPS52-216ENST00000471309 RPRD2Q5VT52 1461 aaKnown RBP13.62□□□□□ -0.23
VPS52-216ENST00000471309 RNF17Q9BXT8 1623 aaKnown RBP13.62□□□□□ -0.23
VPS52-216ENST00000471309 VWDEQ8N2E2 1590 aa13.62□□□□□ -0.23
VPS52-216ENST00000471309 DIP2CQ9Y2E4 1556 aa13.62□□□□□ -0.23
VPS52-216ENST00000471309 MROH1Q8NDA8 1641 aa13.61□□□□□ -0.23
VPS52-216ENST00000471309 DHX29Q7Z478 1369 aaKnown RBP13.61□□□□□ -0.23
VPS52-216ENST00000471309 TONSLQ96HA7 1378 aa13.61□□□□□ -0.23
VPS52-216ENST00000471309 A2MP01023 1474 aa13.61□□□□□ -0.23
VPS52-216ENST00000471309 NEUROD1Q13562 356 aa13.6□□□□□ -0.23
VPS52-216ENST00000471309 TET3O43151 1660 aa13.59□□□□□ -0.23
VPS52-216ENST00000471309 PKD2Q13563 968 aa13.57□□□□□ -0.24
VPS52-216ENST00000471309 FOXD1Q16676 465 aa13.57□□□□□ -0.24
VPS52-216ENST00000471309 E9PCH4 1651 aa13.56□□□□□ -0.24
VPS52-216ENST00000471309 ATP10AO60312 1499 aa13.55□□□□□ -0.24
VPS52-216ENST00000471309 REREQ9P2R6 1566 aa13.55□□□□□ -0.24
VPS52-216ENST00000471309 MYT1LQ9UL68 1186 aa13.55□□□□□ -0.24
VPS52-216ENST00000471309 LMTK2Q8IWU2 1503 aa13.54□□□□□ -0.24
VPS52-216ENST00000471309 RAPGEF3O95398 923 aa13.53□□□□□ -0.24
VPS52-216ENST00000471309 KANK1Q14678 1352 aa13.53□□□□□ -0.24
VPS52-216ENST00000471309 EFCAB6Q5THR3 1501 aa13.53□□□□□ -0.24
VPS52-216ENST00000471309 PPP1R15AO75807 674 aaPredicted RBP13.52□□□□□ -0.25
VPS52-216ENST00000471309 YEATS2Q9ULM3 1422 aa13.52□□□□□ -0.25
VPS52-216ENST00000471309 ZC3H13Q5T200 1668 aaKnown RBP13.52□□□□□ -0.25
VPS52-216ENST00000471309 SPHKAPQ2M3C7 1700 aa13.52□□□□□ -0.25
VPS52-216ENST00000471309 CEP152O94986 1710 aa13.51□□□□□ -0.25
VPS52-216ENST00000471309 TRPM2O94759 1503 aa13.51□□□□□ -0.25
VPS52-216ENST00000471309 ARHGEF40Q8TER5 1519 aa13.51□□□□□ -0.25
VPS52-216ENST00000471309 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.51□□□□□ -0.25
VPS52-216ENST00000471309 PLA2R1Q13018 1463 aa13.5□□□□□ -0.25
VPS52-216ENST00000471309 ZNF316A6NFI3 1004 aaPredicted RBP13.5□□□□□ -0.25
VPS52-216ENST00000471309 KIF3BO15066 747 aa13.5□□□□□ -0.25
VPS52-216ENST00000471309 CCDC144AA2RUR9 1427 aa13.49□□□□□ -0.25
VPS52-216ENST00000471309 AGLP35573 1532 aa13.48□□□□□ -0.25
VPS52-216ENST00000471309 PTPRTO14522 1441 aa13.47□□□□□ -0.25
VPS52-216ENST00000471309 CAMSAP1Q5T5Y3 1602 aa13.47□□□□□ -0.25
VPS52-216ENST00000471309 ABCC3O15438 1527 aa13.47□□□□□ -0.25
VPS52-216ENST00000471309 COL17A1Q9UMD9 1497 aaPredicted RBP13.47□□□□□ -0.25
VPS52-216ENST00000471309 L3MBTL2Q969R5 705 aa13.46□□□□□ -0.25
VPS52-216ENST00000471309 NEURL4Q96JN8 1562 aa13.45□□□□□ -0.26
VPS52-216ENST00000471309 CLTCL1P53675 1640 aa13.44□□□□□ -0.26
VPS52-216ENST00000471309 SIGLEC1Q9BZZ2 1709 aa13.42□□□□□ -0.26
VPS52-216ENST00000471309 UHRF1BP1Q6BDS2 1440 aa13.42□□□□□ -0.26
VPS52-216ENST00000471309 NPATQ14207 1427 aa13.4□□□□□ -0.26
VPS52-216ENST00000471309 ARHGAP31Q2M1Z3 1444 aa13.4□□□□□ -0.26
VPS52-216ENST00000471309 SPATA31E1Q6ZUB1 1445 aa13.39□□□□□ -0.27
VPS52-216ENST00000471309 RALGAPBQ86X10 1494 aa13.39□□□□□ -0.27
VPS52-216ENST00000471309 CNTLNQ9NXG0 1405 aa13.39□□□□□ -0.27
VPS52-216ENST00000471309 KIF1BO60333 1816 aa13.37□□□□□ -0.27
VPS52-216ENST00000471309 GGT6Q6P531 493 aa13.37□□□□□ -0.27
VPS52-216ENST00000471309 PIK3C2BO00750 1634 aa13.37□□□□□ -0.27
VPS52-216ENST00000471309 WASHC2CQ9Y4E1 1318 aa13.37□□□□□ -0.27
VPS52-216ENST00000471309 ADGRB3O60242 1522 aa13.36□□□□□ -0.27
VPS52-216ENST00000471309 UGGT1Q9NYU2 1555 aa13.36□□□□□ -0.27
VPS52-216ENST00000471309 TRPM1Q7Z4N2 1603 aa13.35□□□□□ -0.27
VPS52-216ENST00000471309 MROH2AA6NES4 1674 aa13.35□□□□□ -0.27
VPS52-216ENST00000471309 PREX1Q8TCU6 1659 aa13.35□□□□□ -0.27
VPS52-216ENST00000471309 NBPF8Q3BBV2 869 aa13.35□□□□□ -0.27
VPS52-216ENST00000471309 NOS1P29475 1434 aa13.35□□□□□ -0.27
VPS52-216ENST00000471309 IFT172Q9UG01 1749 aa13.35□□□□□ -0.27
VPS52-216ENST00000471309 CLTCQ00610 1675 aaKnown RBP13.34□□□□□ -0.27
VPS52-216ENST00000471309 SYNMO15061 1565 aa13.34□□□□□ -0.27
VPS52-216ENST00000471309 PRAG1Q86YV5 1406 aa13.34□□□□□ -0.27
VPS52-216ENST00000471309 PPP6R1Q9UPN7 881 aa13.34□□□□□ -0.27
VPS52-216ENST00000471309 LAMC1P11047 1609 aa13.34□□□□□ -0.27
VPS52-216ENST00000471309 MADDQ8WXG6 1647 aa13.33□□□□□ -0.28
VPS52-216ENST00000471309 DIEXFQ68CQ4 756 aaKnown RBP13.33□□□□□ -0.28
VPS52-216ENST00000471309 MYOM2P54296 1465 aa13.31□□□□□ -0.28
VPS52-216ENST00000471309 DCAF11Q8TEB1 546 aa13.31□□□□□ -0.28
VPS52-216ENST00000471309 POLR1AO95602 1720 aaPredicted RBP13.3□□□□□ -0.28
VPS52-216ENST00000471309 STAC3Q96MF2 364 aa13.29□□□□□ -0.28
VPS52-216ENST00000471309 KIAA1210Q9ULL0 1709 aa13.29□□□□□ -0.28
VPS52-216ENST00000471309 PPLO60437 1756 aa13.28□□□□□ -0.28
VPS52-216ENST00000471309 EIF4G2P78344 907 aaKnown RBP eCLIP13.28□□□□□ -0.281e-12■■■■□ 25
VPS52-216ENST00000471309 ERVK-7P63135 1459 aa13.28□□□□□ -0.28
VPS52-216ENST00000471309 SPATA31D1Q6ZQQ2 1576 aa13.28□□□□□ -0.28
VPS52-216ENST00000471309 RGL3Q3MIN7 710 aa13.27□□□□□ -0.29
VPS52-216ENST00000471309 ZNF326Q5BKZ1 582 aaKnown RBP13.27□□□□□ -0.29
VPS52-216ENST00000471309 GPRASP1Q5JY77 1395 aa13.27□□□□□ -0.29
VPS52-216ENST00000471309 HSPA5P11021 654 aaKnown RBP13.26□□□□□ -0.29
VPS52-216ENST00000471309 NRXN1Q9ULB1 1477 aa13.26□□□□□ -0.29
VPS52-216ENST00000471309 USP47Q96K76 1375 aa13.25□□□□□ -0.29
VPS52-216ENST00000471309 KDM2AQ9Y2K7 1162 aa13.25□□□□□ -0.29
VPS52-216ENST00000471309 CFAP65Q6ZU64 1925 aaKnown RBP13.25□□□□□ -0.29
VPS52-216ENST00000471309 ROCK2O75116 1388 aaKnown RBP13.24□□□□□ -0.29
VPS52-216ENST00000471309 TMEM131LA2VDJ0 1609 aa13.24□□□□□ -0.29
VPS52-216ENST00000471309 IQGAP1P46940 1657 aa13.23□□□□□ -0.29
VPS52-216ENST00000471309 NEXMIFQ5QGS0 1516 aa13.23□□□□□ -0.29
VPS52-216ENST00000471309 SLC52A1Q9NWF4 448 aa13.22□□□□□ -0.29
VPS52-216ENST00000471309 HIRIP3Q9BW71 556 aaPredicted RBP13.21□□□□□ -0.29
VPS52-216ENST00000471309 CARD11Q9BXL7 1154 aa13.21□□□□□ -0.29
VPS52-216ENST00000471309 FER1L4A9Z1Z3 1794 aa13.21□□□□□ -0.29
VPS52-216ENST00000471309 RPGRIP1LQ68CZ1 1315 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms