RNA–Protein interactions for RNA: ENST00000468807.1

TTC28-204, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 2

Gene TTC28, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-204ENST00000468807 WASHC2CQ9Y4E1 1318 aa34.08■■■■□ 3.05
TTC28-204ENST00000468807 CEP170BQ9Y4F5 1589 aaPredicted RBP34.06■■■■□ 3.04
TTC28-204ENST00000468807 ZNF142P52746 1687 aaPredicted RBP34.06■■■■□ 3.04
TTC28-204ENST00000468807 PTPRTO14522 1441 aa34.05■■■■□ 3.04
TTC28-204ENST00000468807 PTPN23Q9H3S7 1636 aa34.04■■■■□ 3.04
TTC28-204ENST00000468807 FAM135AQ9P2D6 1515 aa34.02■■■■□ 3.04
TTC28-204ENST00000468807 FBXO31Q5XUX0 539 aaPredicted RBP34■■■■□ 3.03
TTC28-204ENST00000468807 NCKAP5LQ9HCH0 1330 aa33.99■■■■□ 3.03
TTC28-204ENST00000468807 PZPP20742 1482 aa33.97■■■■□ 3.03
TTC28-204ENST00000468807 RNF17Q9BXT8 1623 aaKnown RBP33.96■■■■□ 3.03
TTC28-204ENST00000468807 CROCC2H7BZ55 1655 aa33.96■■■■□ 3.03
TTC28-204ENST00000468807 TNRQ92752 1358 aa33.96■■■■□ 3.03
TTC28-204ENST00000468807 EIF2AK4Q9P2K8 1649 aaKnown RBP33.95■■■■□ 3.03
TTC28-204ENST00000468807 FGD6Q6ZV73 1430 aa33.95■■■■□ 3.02
TTC28-204ENST00000468807 A2ML1A8K2U0 1454 aa33.94■■■■□ 3.02
TTC28-204ENST00000468807 ABCC5O15440 1437 aa33.93■■■■□ 3.02
TTC28-204ENST00000468807 DUOX2Q9NRD8 1548 aa33.93■■■■□ 3.02
TTC28-204ENST00000468807 PLA2R1Q13018 1463 aa33.92■■■■□ 3.02
TTC28-204ENST00000468807 DNMT1P26358 1616 aaKnown RBP33.9■■■■□ 3.02
TTC28-204ENST00000468807 SHANK2Q9UPX8 1470 aa33.9■■■■□ 3.02
TTC28-204ENST00000468807 KIF15Q9NS87 1388 aa33.9■■■■□ 3.02
TTC28-204ENST00000468807 RRP7BPQ9NSQ0 103 aa33.89■■■■□ 3.02
TTC28-204ENST00000468807 DAPK1P53355 1430 aa33.88■■■■□ 3.01
TTC28-204ENST00000468807 ZC3H13Q5T200 1668 aaKnown RBP33.88■■■■□ 3.01
TTC28-204ENST00000468807 PKD2Q13563 968 aa33.88■■■■□ 3.01
TTC28-204ENST00000468807 ABCC3O15438 1527 aa33.88■■■■□ 3.01
TTC28-204ENST00000468807 TCOF1Q13428 1488 aaKnown RBP33.88■■■■□ 3.01
TTC28-204ENST00000468807 MROH1Q8NDA8 1641 aa33.84■■■■□ 3.01
TTC28-204ENST00000468807 CEP152O94986 1710 aa33.84■■■■□ 3.01
TTC28-204ENST00000468807 CHIC2Q9UKJ5 165 aa33.82■■■■□ 3
TTC28-204ENST00000468807 LTBP4Q8N2S1 1624 aa33.81■■■■□ 3
TTC28-204ENST00000468807 ERBINQ96RT1 1412 aa33.79■■■■□ 3
TTC28-204ENST00000468807 NLRP1Q9C000 1473 aa33.78■■■■□ 3
TTC28-204ENST00000468807 FAM50AQ14320 339 aaKnown RBP33.78■■■■□ 3
TTC28-204ENST00000468807 CFAP65Q6ZU64 1925 aaKnown RBP33.77■■■■□ 3
TTC28-204ENST00000468807 ZNF335Q9H4Z2 1342 aaPredicted RBP33.77■■■■□ 3
TTC28-204ENST00000468807 GRWD1Q9BQ67 446 aaKnown RBP eCLIP33.76■■■□□ 2.996e-8■■■■□ 23.6
TTC28-204ENST00000468807 POLR1AO95602 1720 aaPredicted RBP33.76■■■□□ 2.99
TTC28-204ENST00000468807 ANKRD30AQ9BXX3 1397 aa33.75■■■□□ 2.99
TTC28-204ENST00000468807 UGGT1Q9NYU2 1555 aa33.74■■■□□ 2.99
TTC28-204ENST00000468807 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.73■■■□□ 2.99
TTC28-204ENST00000468807 THEMISQ8N1K5 641 aaPredicted RBP33.73■■■□□ 2.99
TTC28-204ENST00000468807 PRDM15P57071 1507 aaPredicted RBP33.73■■■□□ 2.99
TTC28-204ENST00000468807 SPATA31D1Q6ZQQ2 1576 aa33.72■■■□□ 2.99
TTC28-204ENST00000468807 ERVK-7P63135 1459 aa33.72■■■□□ 2.99
TTC28-204ENST00000468807 ANKLE2Q86XL3 938 aa33.68■■■□□ 2.98
TTC28-204ENST00000468807 KANK1Q14678 1352 aa33.67■■■□□ 2.98
TTC28-204ENST00000468807 DEPDC5O75140 1603 aa33.66■■■□□ 2.98
TTC28-204ENST00000468807 NEURL4Q96JN8 1562 aa33.66■■■□□ 2.98
TTC28-204ENST00000468807 IQSEC2Q5JU85 1478 aa33.64■■■□□ 2.98
TTC28-204ENST00000468807 ADGRL2O95490 1459 aa33.6■■■□□ 2.97
TTC28-204ENST00000468807 ARHGAP31Q2M1Z3 1444 aa33.6■■■□□ 2.97
TTC28-204ENST00000468807 NPHP4O75161 1426 aaPredicted RBP33.56■■■□□ 2.96
TTC28-204ENST00000468807 PPARGC1BQ86YN6 1023 aaKnown RBP33.55■■■□□ 2.96
TTC28-204ENST00000468807 UBR1Q8IWV7 1749 aa33.55■■■□□ 2.96
TTC28-204ENST00000468807 IQGAP1P46940 1657 aa33.52■■■□□ 2.96
TTC28-204ENST00000468807 UBAP1LF5GYI3 381 aa33.51■■■□□ 2.95
TTC28-204ENST00000468807 MED14O60244 1454 aa33.5■■■□□ 2.95
TTC28-204ENST00000468807 LMTK2Q8IWU2 1503 aa33.5■■■□□ 2.95
TTC28-204ENST00000468807 ANKRD50Q9ULJ7 1429 aa33.5■■■□□ 2.95
TTC28-204ENST00000468807 VWDEQ8N2E2 1590 aa33.5■■■□□ 2.95
TTC28-204ENST00000468807 STAG3Q9UJ98 1225 aa33.47■■■□□ 2.95
TTC28-204ENST00000468807 CPS1P31327 1500 aa33.45■■■□□ 2.95
TTC28-204ENST00000468807 PIK3C2BO00750 1634 aa33.45■■■□□ 2.95
TTC28-204ENST00000468807 EFCAB6Q5THR3 1501 aa33.44■■■□□ 2.94
TTC28-204ENST00000468807 ITGAEP38570 1179 aa33.43■■■□□ 2.94
TTC28-204ENST00000468807 SCAF11Q99590 1463 aaKnown RBP33.41■■■□□ 2.94
TTC28-204ENST00000468807 TXNDC2Q86VQ3 553 aa33.4■■■□□ 2.94
TTC28-204ENST00000468807 EID1Q9Y6B2 187 aa33.38■■■□□ 2.93
TTC28-204ENST00000468807 SLIT1O75093 1534 aa33.38■■■□□ 2.93
TTC28-204ENST00000468807 LTKP29376 864 aa33.37■■■□□ 2.93
TTC28-204ENST00000468807 SYNMO15061 1565 aa33.37■■■□□ 2.93
TTC28-204ENST00000468807 ARHGAP23Q9P227 1491 aa33.37■■■□□ 2.93
TTC28-204ENST00000468807 IDI1Q13907 227 aa33.36■■■□□ 2.93
TTC28-204ENST00000468807 SCAF1Q9H7N4 1312 aaKnown RBP33.34■■■□□ 2.93
TTC28-204ENST00000468807 ROCK1Q13464 1354 aa33.34■■■□□ 2.93
TTC28-204ENST00000468807 NOS1P29475 1434 aa33.32■■■□□ 2.92
TTC28-204ENST00000468807 TMEM2Q9UHN6 1383 aa33.32■■■□□ 2.92
TTC28-204ENST00000468807 TET3O43151 1660 aa33.31■■■□□ 2.92
TTC28-204ENST00000468807 UNC13BO14795 1591 aa33.3■■■□□ 2.92
TTC28-204ENST00000468807 PIP4K2BP78356 416 aa33.3■■■□□ 2.92
TTC28-204ENST00000468807 KDM5AP29375 1690 aaKnown RBP33.29■■■□□ 2.92
TTC28-204ENST00000468807 STRCP1A6NGW2 1772 aa33.29■■■□□ 2.92
TTC28-204ENST00000468807 TOM1O60784 492 aa33.28■■■□□ 2.92
TTC28-204ENST00000468807 RPRD2Q5VT52 1461 aaKnown RBP33.28■■■□□ 2.92
TTC28-204ENST00000468807 GCC2Q8IWJ2 1684 aa33.26■■■□□ 2.92
TTC28-204ENST00000468807 SLC52A1Q9NWF4 448 aa33.26■■■□□ 2.91
TTC28-204ENST00000468807 ADGRB3O60242 1522 aa33.26■■■□□ 2.91
TTC28-204ENST00000468807 DISP3Q9P2K9 1392 aa33.25■■■□□ 2.91
TTC28-204ENST00000468807 LRRC7Q96NW7 1537 aa33.21■■■□□ 2.91
TTC28-204ENST00000468807 IQGAP3Q86VI3 1631 aa33.18■■■□□ 2.9
TTC28-204ENST00000468807 E9PCH4 1651 aa33.17■■■□□ 2.9
TTC28-204ENST00000468807 NUP155O75694 1391 aa33.17■■■□□ 2.9
TTC28-204ENST00000468807 BCANQ96GW7 911 aa33.16■■■□□ 2.9
TTC28-204ENST00000468807 MYO5BQ9ULV0 1848 aa33.16■■■□□ 2.9
TTC28-204ENST00000468807 CHGAP10645 457 aaKnown RBP33.14■■■□□ 2.9
TTC28-204ENST00000468807 SENP3Q9H4L4 574 aaPredicted RBP33.14■■■□□ 2.9
TTC28-204ENST00000468807 SLC26A8Q96RN1 970 aa33.13■■■□□ 2.89
TTC28-204ENST00000468807 HSPA1LP34931 641 aa33.1■■■□□ 2.89
TTC28-204ENST00000468807 RRBP1Q9P2E9 1410 aaKnown RBP33.1■■■□□ 2.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms