RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 KDM5DQ9BY66 1539 aa27.37■■□□□ 1.97
COL7A1-206ENST00000466591 CEP170BQ9Y4F5 1589 aaPredicted RBP27.35■■□□□ 1.97
COL7A1-206ENST00000466591 FAM135AQ9P2D6 1515 aa27.32■■□□□ 1.96
COL7A1-206ENST00000466591 NCKAP5LQ9HCH0 1330 aa27.32■■□□□ 1.96
COL7A1-206ENST00000466591 ZNF142P52746 1687 aaPredicted RBP27.31■■□□□ 1.96
COL7A1-206ENST00000466591 MAST1Q9Y2H9 1570 aa27.31■■□□□ 1.96
COL7A1-206ENST00000466591 TNRQ92752 1358 aa27.3■■□□□ 1.96
COL7A1-206ENST00000466591 PKD2Q13563 968 aa27.29■■□□□ 1.96
COL7A1-206ENST00000466591 PZPP20742 1482 aa27.27■■□□□ 1.96
COL7A1-206ENST00000466591 FBXO31Q5XUX0 539 aaPredicted RBP27.27■■□□□ 1.96
COL7A1-206ENST00000466591 A2ML1A8K2U0 1454 aa27.25■■□□□ 1.95
COL7A1-206ENST00000466591 PLA2R1Q13018 1463 aa27.25■■□□□ 1.95
COL7A1-206ENST00000466591 PTPN23Q9H3S7 1636 aa27.24■■□□□ 1.95
COL7A1-206ENST00000466591 EIF2AK4Q9P2K8 1649 aaKnown RBP27.22■■□□□ 1.95
COL7A1-206ENST00000466591 DUOX2Q9NRD8 1548 aa27.21■■□□□ 1.95
COL7A1-206ENST00000466591 RRP7BPQ9NSQ0 103 aa27.2■■□□□ 1.94
COL7A1-206ENST00000466591 KIF15Q9NS87 1388 aa27.2■■□□□ 1.94
COL7A1-206ENST00000466591 RNF17Q9BXT8 1623 aaKnown RBP27.19■■□□□ 1.94
COL7A1-206ENST00000466591 ZC3H13Q5T200 1668 aaKnown RBP27.19■■□□□ 1.94
COL7A1-206ENST00000466591 FGD6Q6ZV73 1430 aa27.18■■□□□ 1.94
COL7A1-206ENST00000466591 DNMT1P26358 1616 aaKnown RBP27.18■■□□□ 1.94
COL7A1-206ENST00000466591 SHANK2Q9UPX8 1470 aa27.17■■□□□ 1.94
COL7A1-206ENST00000466591 THEMISQ8N1K5 641 aaPredicted RBP27.16■■□□□ 1.94
COL7A1-206ENST00000466591 TCOF1Q13428 1488 aaKnown RBP27.16■■□□□ 1.94
COL7A1-206ENST00000466591 ABCC3O15438 1527 aa27.16■■□□□ 1.94
COL7A1-206ENST00000466591 CROCC2H7BZ55 1655 aa27.15■■□□□ 1.94
COL7A1-206ENST00000466591 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.15■■□□□ 1.94
COL7A1-206ENST00000466591 ABCC5O15440 1437 aa27.15■■□□□ 1.94
COL7A1-206ENST00000466591 DAPK1P53355 1430 aa27.15■■□□□ 1.94
COL7A1-206ENST00000466591 ZNF335Q9H4Z2 1342 aaPredicted RBP27.15■■□□□ 1.94
COL7A1-206ENST00000466591 NLRP1Q9C000 1473 aa27.14■■□□□ 1.94
COL7A1-206ENST00000466591 FAM50AQ14320 339 aaKnown RBP27.13■■□□□ 1.93
COL7A1-206ENST00000466591 CHIC2Q9UKJ5 165 aa27.13■■□□□ 1.93
COL7A1-206ENST00000466591 LTBP4Q8N2S1 1624 aa27.12■■□□□ 1.93
COL7A1-206ENST00000466591 ANKLE2Q86XL3 938 aa27.12■■□□□ 1.93
COL7A1-206ENST00000466591 KANK1Q14678 1352 aa27.11■■□□□ 1.93
COL7A1-206ENST00000466591 ANKRD30AQ9BXX3 1397 aa27.11■■□□□ 1.93
COL7A1-206ENST00000466591 UGGT1Q9NYU2 1555 aa27.11■■□□□ 1.93
COL7A1-206ENST00000466591 ERBINQ96RT1 1412 aa27.11■■□□□ 1.93
COL7A1-206ENST00000466591 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.1■■□□□ 1.93
COL7A1-206ENST00000466591 IQSEC2Q5JU85 1478 aa27.09■■□□□ 1.93
COL7A1-206ENST00000466591 CEP152O94986 1710 aa27.09■■□□□ 1.93
COL7A1-206ENST00000466591 POLR1AO95602 1720 aaPredicted RBP27.09■■□□□ 1.93
COL7A1-206ENST00000466591 ERVK-7P63135 1459 aa27.05■■□□□ 1.92
COL7A1-206ENST00000466591 MROH1Q8NDA8 1641 aa27.04■■□□□ 1.92
COL7A1-206ENST00000466591 UBAP1LF5GYI3 381 aa27.03■■□□□ 1.92
COL7A1-206ENST00000466591 SPATA31D1Q6ZQQ2 1576 aa27.03■■□□□ 1.92
COL7A1-206ENST00000466591 PRDM15P57071 1507 aaPredicted RBP27.01■■□□□ 1.91
COL7A1-206ENST00000466591 STAG3Q9UJ98 1225 aa27■■□□□ 1.91
COL7A1-206ENST00000466591 CFAP65Q6ZU64 1925 aaKnown RBP26.99■■□□□ 1.91
COL7A1-206ENST00000466591 NPHP4O75161 1426 aaPredicted RBP26.98■■□□□ 1.91
COL7A1-206ENST00000466591 NEURL4Q96JN8 1562 aa26.97■■□□□ 1.91
COL7A1-206ENST00000466591 SCAF1Q9H7N4 1312 aaKnown RBP26.96■■□□□ 1.91
COL7A1-206ENST00000466591 ARHGAP31Q2M1Z3 1444 aa26.93■■□□□ 1.9
COL7A1-206ENST00000466591 CPS1P31327 1500 aa26.93■■□□□ 1.9
COL7A1-206ENST00000466591 DEPDC5O75140 1603 aa26.93■■□□□ 1.9
COL7A1-206ENST00000466591 EID1Q9Y6B2 187 aa26.91■■□□□ 1.9
COL7A1-206ENST00000466591 IQGAP1P46940 1657 aa26.9■■□□□ 1.9
COL7A1-206ENST00000466591 DISP3Q9P2K9 1392 aa26.89■■□□□ 1.9
COL7A1-206ENST00000466591 MED14O60244 1454 aa26.88■■□□□ 1.89
COL7A1-206ENST00000466591 ADGRL2O95490 1459 aa26.88■■□□□ 1.89
COL7A1-206ENST00000466591 UBR1Q8IWV7 1749 aa26.87■■□□□ 1.89
COL7A1-206ENST00000466591 TXNDC2Q86VQ3 553 aa26.87■■□□□ 1.89
COL7A1-206ENST00000466591 TOM1O60784 492 aa26.86■■□□□ 1.89
COL7A1-206ENST00000466591 ANKRD50Q9ULJ7 1429 aa26.86■■□□□ 1.89
COL7A1-206ENST00000466591 ITGAEP38570 1179 aa26.85■■□□□ 1.89
COL7A1-206ENST00000466591 PIP4K2BP78356 416 aa26.85■■□□□ 1.89
COL7A1-206ENST00000466591 SCAF11Q99590 1463 aaKnown RBP26.85■■□□□ 1.89
COL7A1-206ENST00000466591 PPARGC1BQ86YN6 1023 aaKnown RBP26.84■■□□□ 1.89
COL7A1-206ENST00000466591 LMTK2Q8IWU2 1503 aa26.82■■□□□ 1.88
COL7A1-206ENST00000466591 VWDEQ8N2E2 1590 aa26.8■■□□□ 1.88
COL7A1-206ENST00000466591 PIK3C2BO00750 1634 aa26.8■■□□□ 1.88
COL7A1-206ENST00000466591 EFCAB6Q5THR3 1501 aa26.8■■□□□ 1.88
COL7A1-206ENST00000466591 BCANQ96GW7 911 aa26.78■■□□□ 1.88
COL7A1-206ENST00000466591 SLIT1O75093 1534 aa26.76■■□□□ 1.87
COL7A1-206ENST00000466591 IDI1Q13907 227 aa26.76■■□□□ 1.87
COL7A1-206ENST00000466591 LTKP29376 864 aa26.75■■□□□ 1.87
COL7A1-206ENST00000466591 TMEM2Q9UHN6 1383 aa26.74■■□□□ 1.87
COL7A1-206ENST00000466591 ARHGAP23Q9P227 1491 aa26.74■■□□□ 1.87
COL7A1-206ENST00000466591 SLC52A1Q9NWF4 448 aa26.73■■□□□ 1.87
COL7A1-206ENST00000466591 RPRD2Q5VT52 1461 aaKnown RBP26.71■■□□□ 1.87
COL7A1-206ENST00000466591 SYNMO15061 1565 aa26.71■■□□□ 1.87
COL7A1-206ENST00000466591 ROCK1Q13464 1354 aa26.7■■□□□ 1.86
COL7A1-206ENST00000466591 CHGAP10645 457 aaKnown RBP26.69■■□□□ 1.86
COL7A1-206ENST00000466591 NOS1P29475 1434 aa26.69■■□□□ 1.86
COL7A1-206ENST00000466591 ADGRB3O60242 1522 aa26.69■■□□□ 1.86
COL7A1-206ENST00000466591 PPP1R15AO75807 674 aaPredicted RBP26.68■■□□□ 1.86
COL7A1-206ENST00000466591 TET3O43151 1660 aa26.68■■□□□ 1.86
COL7A1-206ENST00000466591 KDM5AP29375 1690 aaKnown RBP26.68■■□□□ 1.86
COL7A1-206ENST00000466591 LRRC7Q96NW7 1537 aa26.66■■□□□ 1.86
COL7A1-206ENST00000466591 HDGFP51858 240 aaKnown RBP26.66■■□□□ 1.86
COL7A1-206ENST00000466591 SENP3Q9H4L4 574 aaPredicted RBP26.66■■□□□ 1.86
COL7A1-206ENST00000466591 HSPA1LP34931 641 aa26.65■■□□□ 1.86
COL7A1-206ENST00000466591 UNC13BO14795 1591 aa26.65■■□□□ 1.86
COL7A1-206ENST00000466591 GCC2Q8IWJ2 1684 aa26.63■■□□□ 1.85
COL7A1-206ENST00000466591 STRCP1A6NGW2 1772 aa26.63■■□□□ 1.85
COL7A1-206ENST00000466591 NUP155O75694 1391 aa26.62■■□□□ 1.85
COL7A1-206ENST00000466591 SLC26A8Q96RN1 970 aa26.62■■□□□ 1.85
COL7A1-206ENST00000466591 IQGAP3Q86VI3 1631 aa26.55■■□□□ 1.84
COL7A1-206ENST00000466591 KCNA6P17658 529 aa26.54■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 130.5 ms