RNA–Protein interactions for RNA: ENST00000466233.1

CHD3-207, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 4

Gene CHD3, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-207ENST00000466233 TCOF1Q13428 1488 aaKnown RBP21.43■■□□□ 1.02
CHD3-207ENST00000466233 CEP170BQ9Y4F5 1589 aaPredicted RBP21.43■■□□□ 1.02
CHD3-207ENST00000466233 LTBP4Q8N2S1 1624 aa21.43■■□□□ 1.02
CHD3-207ENST00000466233 MYO3AQ8NEV4 1616 aa21.42■■□□□ 1.02
CHD3-207ENST00000466233 KDM5DQ9BY66 1539 aa21.41■■□□□ 1.02
CHD3-207ENST00000466233 A2ML1A8K2U0 1454 aa21.41■■□□□ 1.02
CHD3-207ENST00000466233 PZPP20742 1482 aa21.41■■□□□ 1.02
CHD3-207ENST00000466233 WASHC2CQ9Y4E1 1318 aa21.4■■□□□ 1.02
CHD3-207ENST00000466233 MAST1Q9Y2H9 1570 aa21.4■■□□□ 1.02
CHD3-207ENST00000466233 MYOM3Q5VTT5 1437 aa21.38■■□□□ 1.01
CHD3-207ENST00000466233 NCKAP5LQ9HCH0 1330 aa21.36■■□□□ 1.01
CHD3-207ENST00000466233 KANK4Q5T7N3 995 aaPredicted RBP21.36■■□□□ 1.01
CHD3-207ENST00000466233 TNRQ92752 1358 aa21.36■■□□□ 1.01
CHD3-207ENST00000466233 NLRP1Q9C000 1473 aa21.34■■□□□ 1.01
CHD3-207ENST00000466233 DNMT1P26358 1616 aaKnown RBP21.33■■□□□ 1
CHD3-207ENST00000466233 RNF17Q9BXT8 1623 aaKnown RBP21.31■■□□□ 1
CHD3-207ENST00000466233 EIF2AK4Q9P2K8 1649 aaKnown RBP21.31■■□□□ 1
CHD3-207ENST00000466233 FBXO31Q5XUX0 539 aaPredicted RBP21.31■■□□□ 1
CHD3-207ENST00000466233 THEMISQ8N1K5 641 aaPredicted RBP21.31■■□□□ 1
CHD3-207ENST00000466233 APLP2Q06481 763 aa21.3■■□□□ 1
CHD3-207ENST00000466233 SHANK2Q9UPX8 1470 aa21.27■■□□□ 1
CHD3-207ENST00000466233 ZC3H13Q5T200 1668 aaKnown RBP21.27■■□□□ 1
CHD3-207ENST00000466233 ZNF335Q9H4Z2 1342 aaPredicted RBP21.27■□□□□ 0.99
CHD3-207ENST00000466233 DUOX2Q9NRD8 1548 aa21.26■□□□□ 0.99
CHD3-207ENST00000466233 ANKLE2Q86XL3 938 aa21.26■□□□□ 0.99
CHD3-207ENST00000466233 ABCC3O15438 1527 aa21.24■□□□□ 0.99
CHD3-207ENST00000466233 MED14O60244 1454 aa21.23■□□□□ 0.99
CHD3-207ENST00000466233 SPATA31D1Q6ZQQ2 1576 aa21.23■□□□□ 0.99
CHD3-207ENST00000466233 ERBINQ96RT1 1412 aa21.22■□□□□ 0.99
CHD3-207ENST00000466233 UGGT1Q9NYU2 1555 aa21.22■□□□□ 0.99
CHD3-207ENST00000466233 ARHGAP31Q2M1Z3 1444 aa21.21■□□□□ 0.99
CHD3-207ENST00000466233 ABCC5O15440 1437 aa21.21■□□□□ 0.99
CHD3-207ENST00000466233 CPS1P31327 1500 aa21.2■□□□□ 0.98
CHD3-207ENST00000466233 DEPDC5O75140 1603 aa21.2■□□□□ 0.98
CHD3-207ENST00000466233 KIF15Q9NS87 1388 aa21.2■□□□□ 0.98
CHD3-207ENST00000466233 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.19■□□□□ 0.98
CHD3-207ENST00000466233 NEURL4Q96JN8 1562 aa21.19■□□□□ 0.98
CHD3-207ENST00000466233 MROH1Q8NDA8 1641 aa21.18■□□□□ 0.98
CHD3-207ENST00000466233 ERVK-7P63135 1459 aa21.18■□□□□ 0.98
CHD3-207ENST00000466233 POLR1AO95602 1720 aaPredicted RBP21.18■□□□□ 0.98
CHD3-207ENST00000466233 FGD6Q6ZV73 1430 aa21.17■□□□□ 0.98
CHD3-207ENST00000466233 PTPN23Q9H3S7 1636 aa21.16■□□□□ 0.98
CHD3-207ENST00000466233 PRDM15P57071 1507 aaPredicted RBP21.16■□□□□ 0.98
CHD3-207ENST00000466233 DAPK1P53355 1430 aa21.15■□□□□ 0.98
CHD3-207ENST00000466233 UBAP1LF5GYI3 381 aa21.15■□□□□ 0.98
CHD3-207ENST00000466233 NPHP4O75161 1426 aaPredicted RBP21.14■□□□□ 0.98
CHD3-207ENST00000466233 ANKRD30AQ9BXX3 1397 aa21.13■□□□□ 0.97
CHD3-207ENST00000466233 CROCC2H7BZ55 1655 aa21.12■□□□□ 0.97
CHD3-207ENST00000466233 RRP7BPQ9NSQ0 103 aa21.12■□□□□ 0.97
CHD3-207ENST00000466233 TOM1O60784 492 aa21.11■□□□□ 0.97
CHD3-207ENST00000466233 KANK1Q14678 1352 aa21.1■□□□□ 0.97
CHD3-207ENST00000466233 DISP3Q9P2K9 1392 aa21.1■□□□□ 0.97
CHD3-207ENST00000466233 VWDEQ8N2E2 1590 aa21.09■□□□□ 0.97
CHD3-207ENST00000466233 LMTK2Q8IWU2 1503 aa21.09■□□□□ 0.97
CHD3-207ENST00000466233 ARHGAP23Q9P227 1491 aa21.07■□□□□ 0.96
CHD3-207ENST00000466233 SLIT1O75093 1534 aa21.06■□□□□ 0.96
CHD3-207ENST00000466233 ADGRL2O95490 1459 aa21.06■□□□□ 0.96
CHD3-207ENST00000466233 IQGAP1P46940 1657 aa21.05■□□□□ 0.96
CHD3-207ENST00000466233 SCAF11Q99590 1463 aaKnown RBP21.04■□□□□ 0.96
CHD3-207ENST00000466233 CEP152O94986 1710 aa21.04■□□□□ 0.96
CHD3-207ENST00000466233 UBR1Q8IWV7 1749 aa21.03■□□□□ 0.96
CHD3-207ENST00000466233 EID1Q9Y6B2 187 aa21.02■□□□□ 0.96
CHD3-207ENST00000466233 KDM5AP29375 1690 aaKnown RBP21.01■□□□□ 0.95
CHD3-207ENST00000466233 TXNDC2Q86VQ3 553 aa21■□□□□ 0.95
CHD3-207ENST00000466233 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.99■□□□□ 0.95
CHD3-207ENST00000466233 SLC52A1Q9NWF4 448 aa20.99■□□□□ 0.95
CHD3-207ENST00000466233 TMEM2Q9UHN6 1383 aa20.98■□□□□ 0.95
CHD3-207ENST00000466233 LTKP29376 864 aa20.98■□□□□ 0.95
CHD3-207ENST00000466233 CHIC2Q9UKJ5 165 aa20.98■□□□□ 0.95
CHD3-207ENST00000466233 NOS1P29475 1434 aa20.97■□□□□ 0.95
CHD3-207ENST00000466233 RPRD2Q5VT52 1461 aaKnown RBP20.97■□□□□ 0.95
CHD3-207ENST00000466233 SYNMO15061 1565 aa20.97■□□□□ 0.95
CHD3-207ENST00000466233 ANKRD50Q9ULJ7 1429 aa20.95■□□□□ 0.95
CHD3-207ENST00000466233 LRRC7Q96NW7 1537 aa20.95■□□□□ 0.94
CHD3-207ENST00000466233 SOCS7O14512 581 aa20.95■□□□□ 0.94
CHD3-207ENST00000466233 IDI1Q13907 227 aa20.95■□□□□ 0.94
CHD3-207ENST00000466233 ILDR2Q71H61 639 aa20.95■□□□□ 0.94
CHD3-207ENST00000466233 EFCAB6Q5THR3 1501 aa20.94■□□□□ 0.94
CHD3-207ENST00000466233 STAG3Q9UJ98 1225 aa20.93■□□□□ 0.94
CHD3-207ENST00000466233 FAM50AQ14320 339 aaKnown RBP20.92■□□□□ 0.94
CHD3-207ENST00000466233 PIK3C2BO00750 1634 aa20.91■□□□□ 0.94
CHD3-207ENST00000466233 HSPA1LP34931 641 aa20.91■□□□□ 0.94
CHD3-207ENST00000466233 PIP4K2BP78356 416 aa20.91■□□□□ 0.94
CHD3-207ENST00000466233 ROCK1Q13464 1354 aa20.91■□□□□ 0.94
CHD3-207ENST00000466233 CFAP65Q6ZU64 1925 aaKnown RBP20.91■□□□□ 0.94
CHD3-207ENST00000466233 ALKQ9UM73 1620 aa20.89■□□□□ 0.93
CHD3-207ENST00000466233 SCAF1Q9H7N4 1312 aaKnown RBP20.88■□□□□ 0.93
CHD3-207ENST00000466233 STRCP1A6NGW2 1772 aa20.87■□□□□ 0.93
CHD3-207ENST00000466233 HDGFP51858 240 aaKnown RBP20.87■□□□□ 0.93
CHD3-207ENST00000466233 KCNA6P17658 529 aa20.85■□□□□ 0.93
CHD3-207ENST00000466233 ADGRB3O60242 1522 aa20.84■□□□□ 0.93
CHD3-207ENST00000466233 TET3O43151 1660 aa20.84■□□□□ 0.93
CHD3-207ENST00000466233 UNC13BO14795 1591 aa20.8■□□□□ 0.92
CHD3-207ENST00000466233 ZFYVE9O95405 1425 aa20.78■□□□□ 0.92
CHD3-207ENST00000466233 FAM135BQ49AJ0 1406 aa20.78■□□□□ 0.92
CHD3-207ENST00000466233 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.78■□□□□ 0.92
CHD3-207ENST00000466233 NKTRP30414 1462 aaKnown RBP20.77■□□□□ 0.92
CHD3-207ENST00000466233 PLEKHG1Q9ULL1 1385 aa20.77■□□□□ 0.92
CHD3-207ENST00000466233 MED1Q15648 1581 aaPredicted RBP20.76■□□□□ 0.91
CHD3-207ENST00000466233 GCC2Q8IWJ2 1684 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms