RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-209ENST00000465132 A2ML1A8K2U0 1454 aa27.06■■□□□ 1.92
CPSF4-209ENST00000465132 LRRC9Q6ZRR7 1453 aa27.06■■□□□ 1.92
CPSF4-209ENST00000465132 ARHGEF5Q12774 1597 aa27.06■■□□□ 1.92
CPSF4-209ENST00000465132 ZNF335Q9H4Z2 1342 aaPredicted RBP27.06■■□□□ 1.92
CPSF4-209ENST00000465132 TSPY4P0CV99 314 aa27.05■■□□□ 1.92
CPSF4-209ENST00000465132 TSPY10P0CW01 314 aa27.05■■□□□ 1.92
CPSF4-209ENST00000465132 KDM5DQ9BY66 1539 aa27.05■■□□□ 1.92
CPSF4-209ENST00000465132 FAM135AQ9P2D6 1515 aa27.05■■□□□ 1.92
CPSF4-209ENST00000465132 FBXO31Q5XUX0 539 aaPredicted RBP27.04■■□□□ 1.92
CPSF4-209ENST00000465132 TNRQ92752 1358 aa27.03■■□□□ 1.92
CPSF4-209ENST00000465132 PZPP20742 1482 aa27.02■■□□□ 1.92
CPSF4-209ENST00000465132 WASHC2CQ9Y4E1 1318 aa27.02■■□□□ 1.92
CPSF4-209ENST00000465132 DNMT1P26358 1616 aaKnown RBP27.01■■□□□ 1.92
CPSF4-209ENST00000465132 KANK4Q5T7N3 995 aaPredicted RBP26.97■■□□□ 1.91
CPSF4-209ENST00000465132 DISP3Q9P2K9 1392 aa26.96■■□□□ 1.91
CPSF4-209ENST00000465132 MAST1Q9Y2H9 1570 aa26.93■■□□□ 1.9
CPSF4-209ENST00000465132 MIA2Q96PC5 1412 aa26.93■■□□□ 1.9
CPSF4-209ENST00000465132 MYOM3Q5VTT5 1437 aa26.91■■□□□ 1.9
CPSF4-209ENST00000465132 UBAP1LF5GYI3 381 aa26.9■■□□□ 1.9
CPSF4-209ENST00000465132 NLRP1Q9C000 1473 aa26.89■■□□□ 1.9
CPSF4-209ENST00000465132 RNF17Q9BXT8 1623 aaKnown RBP26.89■■□□□ 1.9
CPSF4-209ENST00000465132 NEURL4Q96JN8 1562 aa26.88■■□□□ 1.89
CPSF4-209ENST00000465132 THEMISQ8N1K5 641 aaPredicted RBP26.88■■□□□ 1.89
CPSF4-209ENST00000465132 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.86■■□□□ 1.89
CPSF4-209ENST00000465132 ABCC3O15438 1527 aa26.86■■□□□ 1.89
CPSF4-209ENST00000465132 POLR1AO95602 1720 aaPredicted RBP26.86■■□□□ 1.89
CPSF4-209ENST00000465132 ANKLE2Q86XL3 938 aa26.86■■□□□ 1.89
CPSF4-209ENST00000465132 EIF2AK4Q9P2K8 1649 aaKnown RBP26.84■■□□□ 1.89
CPSF4-209ENST00000465132 ILDR2Q71H61 639 aa26.84■■□□□ 1.89
CPSF4-209ENST00000465132 UGGT1Q9NYU2 1555 aa26.84■■□□□ 1.89
CPSF4-209ENST00000465132 ZC3H13Q5T200 1668 aaKnown RBP26.82■■□□□ 1.88
CPSF4-209ENST00000465132 SPATA31D1Q6ZQQ2 1576 aa26.81■■□□□ 1.88
CPSF4-209ENST00000465132 MROH1Q8NDA8 1641 aa26.8■■□□□ 1.88
CPSF4-209ENST00000465132 SHANK2Q9UPX8 1470 aa26.8■■□□□ 1.88
CPSF4-209ENST00000465132 CPS1P31327 1500 aa26.8■■□□□ 1.88
CPSF4-209ENST00000465132 DUOX2Q9NRD8 1548 aa26.79■■□□□ 1.88
CPSF4-209ENST00000465132 MED14O60244 1454 aa26.78■■□□□ 1.88
CPSF4-209ENST00000465132 ERVK-7P63135 1459 aa26.77■■□□□ 1.88
CPSF4-209ENST00000465132 NPHP4O75161 1426 aaPredicted RBP26.77■■□□□ 1.88
CPSF4-209ENST00000465132 DEPDC5O75140 1603 aa26.76■■□□□ 1.87
CPSF4-209ENST00000465132 ABCC5O15440 1437 aa26.74■■□□□ 1.87
CPSF4-209ENST00000465132 KIF15Q9NS87 1388 aa26.74■■□□□ 1.87
CPSF4-209ENST00000465132 VWDEQ8N2E2 1590 aa26.74■■□□□ 1.87
CPSF4-209ENST00000465132 PTPN23Q9H3S7 1636 aa26.71■■□□□ 1.87
CPSF4-209ENST00000465132 CEP152O94986 1710 aa26.7■■□□□ 1.87
CPSF4-209ENST00000465132 SOCS7O14512 581 aa26.7■■□□□ 1.86
CPSF4-209ENST00000465132 RRP7BPQ9NSQ0 103 aa26.7■■□□□ 1.86
CPSF4-209ENST00000465132 ERBINQ96RT1 1412 aa26.7■■□□□ 1.86
CPSF4-209ENST00000465132 TOM1O60784 492 aa26.69■■□□□ 1.86
CPSF4-209ENST00000465132 CROCC2H7BZ55 1655 aa26.68■■□□□ 1.86
CPSF4-209ENST00000465132 IQGAP1P46940 1657 aa26.68■■□□□ 1.86
CPSF4-209ENST00000465132 PRDM15P57071 1507 aaPredicted RBP26.68■■□□□ 1.86
CPSF4-209ENST00000465132 DAPK1P53355 1430 aa26.67■■□□□ 1.86
CPSF4-209ENST00000465132 ARHGAP31Q2M1Z3 1444 aa26.67■■□□□ 1.86
CPSF4-209ENST00000465132 PIP4K2BP78356 416 aa26.67■■□□□ 1.86
CPSF4-209ENST00000465132 SCAF1Q9H7N4 1312 aaKnown RBP26.66■■□□□ 1.86
CPSF4-209ENST00000465132 FGD6Q6ZV73 1430 aa26.66■■□□□ 1.86
CPSF4-209ENST00000465132 UBR1Q8IWV7 1749 aa26.63■■□□□ 1.85
CPSF4-209ENST00000465132 HSPA1LP34931 641 aa26.63■■□□□ 1.85
CPSF4-209ENST00000465132 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.62■■□□□ 1.85
CPSF4-209ENST00000465132 CFAP65Q6ZU64 1925 aaKnown RBP26.61■■□□□ 1.85
CPSF4-209ENST00000465132 PPARGC1BQ86YN6 1023 aaKnown RBP26.59■■□□□ 1.85
CPSF4-209ENST00000465132 SCAF11Q99590 1463 aaKnown RBP26.59■■□□□ 1.85
CPSF4-209ENST00000465132 ARHGAP23Q9P227 1491 aa26.59■■□□□ 1.85
CPSF4-209ENST00000465132 ANKRD30AQ9BXX3 1397 aa26.58■■□□□ 1.85
CPSF4-209ENST00000465132 CHIC2Q9UKJ5 165 aa26.58■■□□□ 1.85
CPSF4-209ENST00000465132 KANK1Q14678 1352 aa26.58■■□□□ 1.84
CPSF4-209ENST00000465132 SLIT1O75093 1534 aa26.57■■□□□ 1.84
CPSF4-209ENST00000465132 LRRC7Q96NW7 1537 aa26.57■■□□□ 1.84
CPSF4-209ENST00000465132 LTKP29376 864 aa26.57■■□□□ 1.84
CPSF4-209ENST00000465132 TXNDC2Q86VQ3 553 aa26.56■■□□□ 1.84
CPSF4-209ENST00000465132 ALKQ9UM73 1620 aa26.56■■□□□ 1.84
CPSF4-209ENST00000465132 STRCP1A6NGW2 1772 aa26.56■■□□□ 1.84
CPSF4-209ENST00000465132 LMTK2Q8IWU2 1503 aa26.53■■□□□ 1.84
CPSF4-209ENST00000465132 SYNMO15061 1565 aa26.52■■□□□ 1.84
CPSF4-209ENST00000465132 EID1Q9Y6B2 187 aa26.51■■□□□ 1.83
CPSF4-209ENST00000465132 PIK3C2BO00750 1634 aa26.5■■□□□ 1.83
CPSF4-209ENST00000465132 TMEM2Q9UHN6 1383 aa26.49■■□□□ 1.83
CPSF4-209ENST00000465132 STAG3Q9UJ98 1225 aa26.48■■□□□ 1.83
CPSF4-209ENST00000465132 IDI1Q13907 227 aa26.47■■□□□ 1.83
CPSF4-209ENST00000465132 ADGRL2O95490 1459 aa26.47■■□□□ 1.83
CPSF4-209ENST00000465132 MED1Q15648 1581 aaPredicted RBP26.46■■□□□ 1.83
CPSF4-209ENST00000465132 FAM50AQ14320 339 aaKnown RBP26.44■■□□□ 1.82
CPSF4-209ENST00000465132 EFCAB6Q5THR3 1501 aa26.44■■□□□ 1.82
CPSF4-209ENST00000465132 KDM5AP29375 1690 aaKnown RBP26.43■■□□□ 1.82
CPSF4-209ENST00000465132 NOS1P29475 1434 aa26.42■■□□□ 1.82
CPSF4-209ENST00000465132 RRBP1Q9P2E9 1410 aaKnown RBP26.41■■□□□ 1.82
CPSF4-209ENST00000465132 ANKRD50Q9ULJ7 1429 aa26.39■■□□□ 1.81
CPSF4-209ENST00000465132 SLC52A1Q9NWF4 448 aa26.37■■□□□ 1.81
CPSF4-209ENST00000465132 SENP3Q9H4L4 574 aaPredicted RBP26.36■■□□□ 1.81
CPSF4-209ENST00000465132 ADGRB3O60242 1522 aa26.35■■□□□ 1.81
CPSF4-209ENST00000465132 TET3O43151 1660 aa26.34■■□□□ 1.81
CPSF4-209ENST00000465132 XIRP1Q702N8 1843 aaKnown RBP26.33■■□□□ 1.81
CPSF4-209ENST00000465132 KCNA6P17658 529 aa26.33■■□□□ 1.81
CPSF4-209ENST00000465132 SLC26A8Q96RN1 970 aa26.33■■□□□ 1.81
CPSF4-209ENST00000465132 RPRD2Q5VT52 1461 aaKnown RBP26.33■■□□□ 1.81
CPSF4-209ENST00000465132 TMEM94Q12767 1356 aa26.3■■□□□ 1.8
CPSF4-209ENST00000465132 PHF23Q9BUL5 403 aaPredicted RBP26.29■■□□□ 1.8
CPSF4-209ENST00000465132 PROSER2Q86WR7 435 aaPredicted RBP26.26■■□□□ 1.79
CPSF4-209ENST00000465132 FAM135BQ49AJ0 1406 aa26.25■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms