RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 TSPY4P0CV99 314 aa35.99■■■■□ 3.35
USP4-208ENST00000464168 TSPY10P0CW01 314 aa35.99■■■■□ 3.35
USP4-208ENST00000464168 WASHC2CQ9Y4E1 1318 aa35.99■■■■□ 3.35
USP4-208ENST00000464168 VPS8Q8N3P4 1428 aa35.99■■■■□ 3.35
USP4-208ENST00000464168 TNRQ92752 1358 aa35.98■■■■□ 3.35
USP4-208ENST00000464168 DISP3Q9P2K9 1392 aa35.98■■■■□ 3.35
USP4-208ENST00000464168 LRRC9Q6ZRR7 1453 aa35.98■■■■□ 3.35
USP4-208ENST00000464168 ARHGEF5Q12774 1597 aa35.98■■■■□ 3.35
USP4-208ENST00000464168 KDM5DQ9BY66 1539 aa35.97■■■■□ 3.35
USP4-208ENST00000464168 DNMT1P26358 1616 aaKnown RBP35.97■■■■□ 3.35
USP4-208ENST00000464168 PZPP20742 1482 aa35.96■■■■□ 3.35
USP4-208ENST00000464168 FAM135AQ9P2D6 1515 aa35.95■■■■□ 3.35
USP4-208ENST00000464168 KANK4Q5T7N3 995 aaPredicted RBP35.9■■■■□ 3.34
USP4-208ENST00000464168 UBAP1LF5GYI3 381 aa35.88■■■■□ 3.33
USP4-208ENST00000464168 ILDR2Q71H61 639 aa35.88■■■■□ 3.33
USP4-208ENST00000464168 MIA2Q96PC5 1412 aa35.86■■■■□ 3.33
USP4-208ENST00000464168 MAP3K1Q13233 1512 aa35.83■■■■□ 3.33
USP4-208ENST00000464168 THEMISQ8N1K5 641 aaPredicted RBP35.81■■■■□ 3.32
USP4-208ENST00000464168 MAST1Q9Y2H9 1570 aa35.8■■■■□ 3.32
USP4-208ENST00000464168 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP35.79■■■■□ 3.32
USP4-208ENST00000464168 ANKLE2Q86XL3 938 aa35.79■■■■□ 3.32
USP4-208ENST00000464168 NEURL4Q96JN8 1562 aa35.79■■■■□ 3.32
USP4-208ENST00000464168 NLRP1Q9C000 1473 aa35.79■■■■□ 3.32
USP4-208ENST00000464168 MYOM3Q5VTT5 1437 aa35.77■■■■□ 3.32
USP4-208ENST00000464168 RNF17Q9BXT8 1623 aaKnown RBP35.75■■■■□ 3.31
USP4-208ENST00000464168 ABCC3O15438 1527 aa35.73■■■■□ 3.31
USP4-208ENST00000464168 SPATA31D1Q6ZQQ2 1576 aa35.73■■■■□ 3.31
USP4-208ENST00000464168 POLR1AO95602 1720 aaPredicted RBP35.73■■■■□ 3.31
USP4-208ENST00000464168 UGGT1Q9NYU2 1555 aa35.72■■■■□ 3.31
USP4-208ENST00000464168 SHANK2Q9UPX8 1470 aa35.7■■■■□ 3.31
USP4-208ENST00000464168 EIF2AK4Q9P2K8 1649 aaKnown RBP35.67■■■■□ 3.3
USP4-208ENST00000464168 CPS1P31327 1500 aa35.67■■■■□ 3.3
USP4-208ENST00000464168 SOCS7O14512 581 aa35.66■■■■□ 3.3
USP4-208ENST00000464168 MED14O60244 1454 aa35.66■■■■□ 3.3
USP4-208ENST00000464168 NPHP4O75161 1426 aaPredicted RBP35.65■■■■□ 3.3
USP4-208ENST00000464168 MROH1Q8NDA8 1641 aa35.65■■■■□ 3.3
USP4-208ENST00000464168 ZC3H13Q5T200 1668 aaKnown RBP35.63■■■■□ 3.29
USP4-208ENST00000464168 ERVK-7P63135 1459 aa35.63■■■■□ 3.29
USP4-208ENST00000464168 DEPDC5O75140 1603 aa35.62■■■■□ 3.29
USP4-208ENST00000464168 DUOX2Q9NRD8 1548 aa35.62■■■■□ 3.29
USP4-208ENST00000464168 VWDEQ8N2E2 1590 aa35.61■■■■□ 3.29
USP4-208ENST00000464168 TOM1O60784 492 aa35.59■■■■□ 3.29
USP4-208ENST00000464168 ABCC5O15440 1437 aa35.57■■■■□ 3.29
USP4-208ENST00000464168 KIF15Q9NS87 1388 aa35.57■■■■□ 3.28
USP4-208ENST00000464168 PIP4K2BP78356 416 aa35.56■■■■□ 3.28
USP4-208ENST00000464168 SCAF1Q9H7N4 1312 aaKnown RBP35.56■■■■□ 3.28
USP4-208ENST00000464168 RRP7BPQ9NSQ0 103 aa35.55■■■■□ 3.28
USP4-208ENST00000464168 HSPA1LP34931 641 aa35.53■■■■□ 3.28
USP4-208ENST00000464168 APLP2Q06481 763 aa35.53■■■■□ 3.28
USP4-208ENST00000464168 CEP152O94986 1710 aa35.52■■■■□ 3.28
USP4-208ENST00000464168 IQGAP1P46940 1657 aa35.5■■■■□ 3.27
USP4-208ENST00000464168 ERBINQ96RT1 1412 aa35.49■■■■□ 3.27
USP4-208ENST00000464168 PTPN23Q9H3S7 1636 aa35.49■■■■□ 3.27
USP4-208ENST00000464168 ARHGAP31Q2M1Z3 1444 aa35.49■■■■□ 3.27
USP4-208ENST00000464168 CFAP65Q6ZU64 1925 aaKnown RBP35.47■■■■□ 3.27
USP4-208ENST00000464168 PRDM15P57071 1507 aaPredicted RBP35.47■■■■□ 3.27
USP4-208ENST00000464168 DAPK1P53355 1430 aa35.46■■■■□ 3.27
USP4-208ENST00000464168 GRWD1Q9BQ67 446 aaKnown RBP eCLIP35.45■■■■□ 3.277e-6■□□□□ 10.8
USP4-208ENST00000464168 CROCC2H7BZ55 1655 aa35.44■■■■□ 3.26
USP4-208ENST00000464168 FGD6Q6ZV73 1430 aa35.43■■■■□ 3.26
USP4-208ENST00000464168 UBR1Q8IWV7 1749 aa35.43■■■■□ 3.26
USP4-208ENST00000464168 LTKP29376 864 aa35.42■■■■□ 3.26
USP4-208ENST00000464168 ALKQ9UM73 1620 aa35.4■■■■□ 3.26
USP4-208ENST00000464168 SCAF11Q99590 1463 aaKnown RBP35.4■■■■□ 3.26
USP4-208ENST00000464168 TXNDC2Q86VQ3 553 aa35.39■■■■□ 3.26
USP4-208ENST00000464168 ARHGAP23Q9P227 1491 aa35.39■■■■□ 3.26
USP4-208ENST00000464168 LRRC7Q96NW7 1537 aa35.38■■■■□ 3.25
USP4-208ENST00000464168 CHIC2Q9UKJ5 165 aa35.38■■■■□ 3.25
USP4-208ENST00000464168 STRCP1A6NGW2 1772 aa35.38■■■■□ 3.25
USP4-208ENST00000464168 SLIT1O75093 1534 aa35.36■■■■□ 3.25
USP4-208ENST00000464168 KANK1Q14678 1352 aa35.35■■■■□ 3.25
USP4-208ENST00000464168 ANKRD30AQ9BXX3 1397 aa35.35■■■■□ 3.25
USP4-208ENST00000464168 EID1Q9Y6B2 187 aa35.31■■■■□ 3.24
USP4-208ENST00000464168 TMEM2Q9UHN6 1383 aa35.27■■■■□ 3.24
USP4-208ENST00000464168 SYNMO15061 1565 aa35.27■■■■□ 3.24
USP4-208ENST00000464168 IDI1Q13907 227 aa35.27■■■■□ 3.24
USP4-208ENST00000464168 LMTK2Q8IWU2 1503 aa35.27■■■■□ 3.24
USP4-208ENST00000464168 MED1Q15648 1581 aaPredicted RBP35.26■■■■□ 3.24
USP4-208ENST00000464168 PIK3C2BO00750 1634 aa35.25■■■■□ 3.23
USP4-208ENST00000464168 STAG3Q9UJ98 1225 aa35.25■■■■□ 3.23
USP4-208ENST00000464168 ADGRL2O95490 1459 aa35.18■■■■□ 3.22
USP4-208ENST00000464168 EFCAB6Q5THR3 1501 aa35.17■■■■□ 3.22
USP4-208ENST00000464168 NOS1P29475 1434 aa35.17■■■■□ 3.22
USP4-208ENST00000464168 FAM50AQ14320 339 aaKnown RBP35.17■■■■□ 3.22
USP4-208ENST00000464168 SENP3Q9H4L4 574 aaPredicted RBP35.17■■■■□ 3.22
USP4-208ENST00000464168 KDM5AP29375 1690 aaKnown RBP35.14■■■■□ 3.22
USP4-208ENST00000464168 SLC52A1Q9NWF4 448 aa35.1■■■■□ 3.21
USP4-208ENST00000464168 ANKRD50Q9ULJ7 1429 aa35.09■■■■□ 3.21
USP4-208ENST00000464168 SLC26A8Q96RN1 970 aa35.09■■■■□ 3.21
USP4-208ENST00000464168 KCNA6P17658 529 aa35.08■■■■□ 3.21
USP4-208ENST00000464168 XIRP1Q702N8 1843 aaKnown RBP35.06■■■■□ 3.2
USP4-208ENST00000464168 TET3O43151 1660 aa35.06■■■■□ 3.2
USP4-208ENST00000464168 PHF23Q9BUL5 403 aaPredicted RBP35.05■■■■□ 3.2
USP4-208ENST00000464168 ADGRB3O60242 1522 aa35.04■■■■□ 3.2
USP4-208ENST00000464168 TMEM94Q12767 1356 aa35.03■■■■□ 3.2
USP4-208ENST00000464168 RPRD2Q5VT52 1461 aaKnown RBP35.02■■■■□ 3.2
USP4-208ENST00000464168 PROSER2Q86WR7 435 aaPredicted RBP34.99■■■■□ 3.19
USP4-208ENST00000464168 FAM135BQ49AJ0 1406 aa34.98■■■■□ 3.19
USP4-208ENST00000464168 RBM33Q96EV2 1170 aaKnown RBP34.97■■■■□ 3.19
USP4-208ENST00000464168 BCANQ96GW7 911 aa34.94■■■■□ 3.18
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms