RNA–Protein interactions for RNA: ENST00000464078.5

HMGN1-210, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 508 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-210ENST00000464078 KDM5DQ9BY66 1539 aa27.83■■■□□ 2.05
HMGN1-210ENST00000464078 PZPP20742 1482 aa27.81■■■□□ 2.04
HMGN1-210ENST00000464078 ARHGEF5Q12774 1597 aa27.8■■■□□ 2.04
HMGN1-210ENST00000464078 POLR1AO95602 1720 aaPredicted RBP27.79■■■□□ 2.04
HMGN1-210ENST00000464078 ILDR2Q71H61 639 aa27.79■■■□□ 2.04
HMGN1-210ENST00000464078 RSPH4AQ5TD94 716 aa27.77■■■□□ 2.04
HMGN1-210ENST00000464078 TNRQ92752 1358 aa27.75■■■□□ 2.03
HMGN1-210ENST00000464078 NEURL4Q96JN8 1562 aa27.75■■■□□ 2.03
HMGN1-210ENST00000464078 KIF3BO15066 747 aa27.72■■■□□ 2.03
HMGN1-210ENST00000464078 SOCS7O14512 581 aa27.71■■■□□ 2.03
HMGN1-210ENST00000464078 UBAP1LF5GYI3 381 aa27.69■■■□□ 2.02
HMGN1-210ENST00000464078 RNF17Q9BXT8 1623 aaKnown RBP27.69■■■□□ 2.02
HMGN1-210ENST00000464078 NLRP1Q9C000 1473 aa27.69■■■□□ 2.02
HMGN1-210ENST00000464078 CPS1P31327 1500 aa27.68■■■□□ 2.02
HMGN1-210ENST00000464078 MAST1Q9Y2H9 1570 aa27.68■■■□□ 2.02
HMGN1-210ENST00000464078 FBXO31Q5XUX0 539 aaPredicted RBP27.67■■■□□ 2.02
HMGN1-210ENST00000464078 WASHC2CQ9Y4E1 1318 aa27.66■■■□□ 2.02
HMGN1-210ENST00000464078 ZC3H13Q5T200 1668 aaKnown RBP27.65■■■□□ 2.02
HMGN1-210ENST00000464078 LRRC9Q6ZRR7 1453 aa27.64■■■□□ 2.02
HMGN1-210ENST00000464078 DEPDC5O75140 1603 aa27.64■■■□□ 2.02
HMGN1-210ENST00000464078 MIA2Q96PC5 1412 aa27.64■■■□□ 2.02
HMGN1-210ENST00000464078 EIF2AK4Q9P2K8 1649 aaKnown RBP27.63■■■□□ 2.01
HMGN1-210ENST00000464078 VPS8Q8N3P4 1428 aa27.63■■■□□ 2.01
HMGN1-210ENST00000464078 UGGT1Q9NYU2 1555 aa27.62■■■□□ 2.01
HMGN1-210ENST00000464078 SHANK2Q9UPX8 1470 aa27.62■■■□□ 2.01
HMGN1-210ENST00000464078 MED14O60244 1454 aa27.61■■■□□ 2.01
HMGN1-210ENST00000464078 ABCC3O15438 1527 aa27.61■■■□□ 2.01
HMGN1-210ENST00000464078 TSPY4P0CV99 314 aa27.6■■■□□ 2.01
HMGN1-210ENST00000464078 TSPY10P0CW01 314 aa27.6■■■□□ 2.01
HMGN1-210ENST00000464078 VWDEQ8N2E2 1590 aa27.6■■■□□ 2.01
HMGN1-210ENST00000464078 MAP3K1Q13233 1512 aa27.59■■■□□ 2.01
HMGN1-210ENST00000464078 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.58■■■□□ 2.01
HMGN1-210ENST00000464078 THEMISQ8N1K5 641 aaPredicted RBP27.57■■■□□ 2
HMGN1-210ENST00000464078 MROH1Q8NDA8 1641 aa27.56■■■□□ 2
HMGN1-210ENST00000464078 ANKLE2Q86XL3 938 aa27.56■■■□□ 2
HMGN1-210ENST00000464078 NPHP4O75161 1426 aaPredicted RBP27.54■■■□□ 2
HMGN1-210ENST00000464078 IQGAP1P46940 1657 aa27.53■■■□□ 2
HMGN1-210ENST00000464078 ERVK-7P63135 1459 aa27.51■■■□□ 2
HMGN1-210ENST00000464078 MYOM3Q5VTT5 1437 aa27.51■■□□□ 1.99
HMGN1-210ENST00000464078 TOM1O60784 492 aa27.48■■□□□ 1.99
HMGN1-210ENST00000464078 DUOX2Q9NRD8 1548 aa27.47■■□□□ 1.99
HMGN1-210ENST00000464078 CEP152O94986 1710 aa27.47■■□□□ 1.99
HMGN1-210ENST00000464078 ALKQ9UM73 1620 aa27.46■■□□□ 1.99
HMGN1-210ENST00000464078 SYNMO15061 1565 aa27.45■■□□□ 1.99
HMGN1-210ENST00000464078 UBR1Q8IWV7 1749 aa27.44■■□□□ 1.98
HMGN1-210ENST00000464078 PRDM15P57071 1507 aaPredicted RBP27.44■■□□□ 1.98
HMGN1-210ENST00000464078 MED1Q15648 1581 aaPredicted RBP27.43■■□□□ 1.98
HMGN1-210ENST00000464078 CROCC2H7BZ55 1655 aa27.43■■□□□ 1.98
HMGN1-210ENST00000464078 HSPA1LP34931 641 aa27.43■■□□□ 1.98
HMGN1-210ENST00000464078 KANK4Q5T7N3 995 aaPredicted RBP27.42■■□□□ 1.98
HMGN1-210ENST00000464078 STRCP1A6NGW2 1772 aa27.42■■□□□ 1.98
HMGN1-210ENST00000464078 ARHGAP31Q2M1Z3 1444 aa27.4■■□□□ 1.98
HMGN1-210ENST00000464078 SCAF1Q9H7N4 1312 aaKnown RBP27.4■■□□□ 1.98
HMGN1-210ENST00000464078 PIP4K2BP78356 416 aa27.39■■□□□ 1.98
HMGN1-210ENST00000464078 ERBINQ96RT1 1412 aa27.38■■□□□ 1.97
HMGN1-210ENST00000464078 LRRC7Q96NW7 1537 aa27.37■■□□□ 1.97
HMGN1-210ENST00000464078 ARHGAP23Q9P227 1491 aa27.37■■□□□ 1.97
HMGN1-210ENST00000464078 SLIT1O75093 1534 aa27.36■■□□□ 1.97
HMGN1-210ENST00000464078 SCAF11Q99590 1463 aaKnown RBP27.36■■□□□ 1.97
HMGN1-210ENST00000464078 KIF15Q9NS87 1388 aa27.35■■□□□ 1.97
HMGN1-210ENST00000464078 PTPN23Q9H3S7 1636 aa27.33■■□□□ 1.97
HMGN1-210ENST00000464078 CFAP65Q6ZU64 1925 aaKnown RBP27.33■■□□□ 1.97
HMGN1-210ENST00000464078 ABCC5O15440 1437 aa27.32■■□□□ 1.96
HMGN1-210ENST00000464078 LOC105371045A0A1W2PR82 267 aa27.31■■□□□ 1.96
HMGN1-210ENST00000464078 KDM5AP29375 1690 aaKnown RBP27.29■■□□□ 1.96
HMGN1-210ENST00000464078 PIK3C2BO00750 1634 aa27.27■■□□□ 1.96
HMGN1-210ENST00000464078 DAPK1P53355 1430 aa27.26■■□□□ 1.95
HMGN1-210ENST00000464078 LMTK2Q8IWU2 1503 aa27.25■■□□□ 1.95
HMGN1-210ENST00000464078 FGD6Q6ZV73 1430 aa27.24■■□□□ 1.95
HMGN1-210ENST00000464078 LTKP29376 864 aa27.23■■□□□ 1.95
HMGN1-210ENST00000464078 XIRP1Q702N8 1843 aaKnown RBP27.22■■□□□ 1.95
HMGN1-210ENST00000464078 KANK1Q14678 1352 aa27.21■■□□□ 1.95
HMGN1-210ENST00000464078 RRP7BPQ9NSQ0 103 aa27.2■■□□□ 1.94
HMGN1-210ENST00000464078 TMEM2Q9UHN6 1383 aa27.2■■□□□ 1.94
HMGN1-210ENST00000464078 TXNDC2Q86VQ3 553 aa27.19■■□□□ 1.94
HMGN1-210ENST00000464078 EFCAB6Q5THR3 1501 aa27.18■■□□□ 1.94
HMGN1-210ENST00000464078 EID1Q9Y6B2 187 aa27.17■■□□□ 1.94
HMGN1-210ENST00000464078 ANKRD30AQ9BXX3 1397 aa27.16■■□□□ 1.94
HMGN1-210ENST00000464078 APLP2Q06481 763 aa27.13■■□□□ 1.93
HMGN1-210ENST00000464078 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.12■■□□□ 1.931e-6■■□□□ 12.8
HMGN1-210ENST00000464078 NOS1P29475 1434 aa27.12■■□□□ 1.93
HMGN1-210ENST00000464078 ADGRL2O95490 1459 aa27.12■■□□□ 1.93
HMGN1-210ENST00000464078 ADGRB3O60242 1522 aa27.11■■□□□ 1.93
HMGN1-210ENST00000464078 PHF23Q9BUL5 403 aaPredicted RBP27.1■■□□□ 1.93
HMGN1-210ENST00000464078 TET3O43151 1660 aa27.1■■□□□ 1.93
HMGN1-210ENST00000464078 NWD1Q149M9 1564 aa27.06■■□□□ 1.92
HMGN1-210ENST00000464078 IDI1Q13907 227 aa27.06■■□□□ 1.92
HMGN1-210ENST00000464078 STAG3Q9UJ98 1225 aa27.06■■□□□ 1.92
HMGN1-210ENST00000464078 FAM135BQ49AJ0 1406 aa27.06■■□□□ 1.92
HMGN1-210ENST00000464078 RPRD2Q5VT52 1461 aaKnown RBP27.05■■□□□ 1.92
HMGN1-210ENST00000464078 NKTRP30414 1462 aaKnown RBP27.04■■□□□ 1.92
HMGN1-210ENST00000464078 TMEM94Q12767 1356 aa27.03■■□□□ 1.92
HMGN1-210ENST00000464078 CHIC2Q9UKJ5 165 aa27.02■■□□□ 1.92
HMGN1-210ENST00000464078 KCNA6P17658 529 aa27.01■■□□□ 1.91
HMGN1-210ENST00000464078 SLC52A1Q9NWF4 448 aa27■■□□□ 1.91
HMGN1-210ENST00000464078 SENP3Q9H4L4 574 aaPredicted RBP26.99■■□□□ 1.91
HMGN1-210ENST00000464078 ROBO1Q9Y6N7 1651 aa26.97■■□□□ 1.91
HMGN1-210ENST00000464078 ANKRD50Q9ULJ7 1429 aa26.97■■□□□ 1.91
HMGN1-210ENST00000464078 ZFYVE9O95405 1425 aa26.95■■□□□ 1.9
HMGN1-210ENST00000464078 SLC26A8Q96RN1 970 aa26.94■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms