RNA–Protein interactions for RNA: ENST00000463818.1

SF3A1-205, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-205ENST00000463818 CAMSAP1Q5T5Y3 1602 aa29.45■■■□□ 2.31
SF3A1-205ENST00000463818 MAST1Q9Y2H9 1570 aa29.43■■■□□ 2.3
SF3A1-205ENST00000463818 PKD2Q13563 968 aa29.42■■■□□ 2.3
SF3A1-205ENST00000463818 TNRQ92752 1358 aa29.41■■■□□ 2.3
SF3A1-205ENST00000463818 KDM5DQ9BY66 1539 aa29.41■■■□□ 2.3
SF3A1-205ENST00000463818 ABCC5O15440 1437 aa29.38■■■□□ 2.29
SF3A1-205ENST00000463818 PZPP20742 1482 aa29.38■■■□□ 2.29
SF3A1-205ENST00000463818 RRP7BPQ9NSQ0 103 aa29.38■■■□□ 2.29
SF3A1-205ENST00000463818 FAM135AQ9P2D6 1515 aa29.38■■■□□ 2.29
SF3A1-205ENST00000463818 CEP170BQ9Y4F5 1589 aaPredicted RBP29.37■■■□□ 2.29
SF3A1-205ENST00000463818 MYO3AQ8NEV4 1616 aa29.37■■■□□ 2.29
SF3A1-205ENST00000463818 A2ML1A8K2U0 1454 aa29.36■■■□□ 2.29
SF3A1-205ENST00000463818 FGD6Q6ZV73 1430 aa29.35■■■□□ 2.29
SF3A1-205ENST00000463818 PLA2R1Q13018 1463 aa29.35■■■□□ 2.29
SF3A1-205ENST00000463818 PTPN23Q9H3S7 1636 aa29.32■■■□□ 2.28
SF3A1-205ENST00000463818 KIF15Q9NS87 1388 aa29.32■■■□□ 2.28
SF3A1-205ENST00000463818 ZNF142P52746 1687 aaPredicted RBP29.31■■■□□ 2.28
SF3A1-205ENST00000463818 CHIC2Q9UKJ5 165 aa29.31■■■□□ 2.28
SF3A1-205ENST00000463818 TCOF1Q13428 1488 aaKnown RBP29.3■■■□□ 2.28
SF3A1-205ENST00000463818 DUOX2Q9NRD8 1548 aa29.3■■■□□ 2.28
SF3A1-205ENST00000463818 DAPK1P53355 1430 aa29.29■■■□□ 2.28
SF3A1-205ENST00000463818 THEMISQ8N1K5 641 aaPredicted RBP29.28■■■□□ 2.28
SF3A1-205ENST00000463818 SHANK2Q9UPX8 1470 aa29.28■■■□□ 2.28
SF3A1-205ENST00000463818 ZNF335Q9H4Z2 1342 aaPredicted RBP29.27■■■□□ 2.28
SF3A1-205ENST00000463818 DNMT1P26358 1616 aaKnown RBP29.27■■■□□ 2.28
SF3A1-205ENST00000463818 LTBP4Q8N2S1 1624 aa29.27■■■□□ 2.28
SF3A1-205ENST00000463818 RNF17Q9BXT8 1623 aaKnown RBP29.27■■■□□ 2.28
SF3A1-205ENST00000463818 ABCC3O15438 1527 aa29.26■■■□□ 2.27
SF3A1-205ENST00000463818 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.25■■■□□ 2.27
SF3A1-205ENST00000463818 EIF2AK4Q9P2K8 1649 aaKnown RBP29.23■■■□□ 2.27
SF3A1-205ENST00000463818 FAM50AQ14320 339 aaKnown RBP29.23■■■□□ 2.27
SF3A1-205ENST00000463818 ANKLE2Q86XL3 938 aa29.23■■■□□ 2.27
SF3A1-205ENST00000463818 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.23■■■□□ 2.27
SF3A1-205ENST00000463818 ANKRD30AQ9BXX3 1397 aa29.22■■■□□ 2.27
SF3A1-205ENST00000463818 NLRP1Q9C000 1473 aa29.22■■■□□ 2.27
SF3A1-205ENST00000463818 ERBINQ96RT1 1412 aa29.2■■■□□ 2.27
SF3A1-205ENST00000463818 MROH1Q8NDA8 1641 aa29.2■■■□□ 2.26
SF3A1-205ENST00000463818 UGGT1Q9NYU2 1555 aa29.15■■■□□ 2.26
SF3A1-205ENST00000463818 ERVK-7P63135 1459 aa29.15■■■□□ 2.26
SF3A1-205ENST00000463818 CROCC2H7BZ55 1655 aa29.15■■■□□ 2.26
SF3A1-205ENST00000463818 ZC3H13Q5T200 1668 aaKnown RBP29.14■■■□□ 2.26
SF3A1-205ENST00000463818 SPATA31D1Q6ZQQ2 1576 aa29.13■■■□□ 2.25
SF3A1-205ENST00000463818 IQSEC2Q5JU85 1478 aa29.13■■■□□ 2.25
SF3A1-205ENST00000463818 KANK1Q14678 1352 aa29.13■■■□□ 2.25
SF3A1-205ENST00000463818 ARHGAP31Q2M1Z3 1444 aa29.11■■■□□ 2.25
SF3A1-205ENST00000463818 PRDM15P57071 1507 aaPredicted RBP29.08■■■□□ 2.25
SF3A1-205ENST00000463818 CEP152O94986 1710 aa29.07■■■□□ 2.24
SF3A1-205ENST00000463818 UBAP1LF5GYI3 381 aa29.06■■■□□ 2.24
SF3A1-205ENST00000463818 NEURL4Q96JN8 1562 aa29.05■■■□□ 2.24
SF3A1-205ENST00000463818 NPHP4O75161 1426 aaPredicted RBP29.05■■■□□ 2.24
SF3A1-205ENST00000463818 ADGRL2O95490 1459 aa29.04■■■□□ 2.24
SF3A1-205ENST00000463818 PPARGC1BQ86YN6 1023 aaKnown RBP29.04■■■□□ 2.24
SF3A1-205ENST00000463818 MED14O60244 1454 aa29.03■■■□□ 2.24
SF3A1-205ENST00000463818 CFAP65Q6ZU64 1925 aaKnown RBP29.02■■■□□ 2.24
SF3A1-205ENST00000463818 DEPDC5O75140 1603 aa28.99■■■□□ 2.23
SF3A1-205ENST00000463818 TXNDC2Q86VQ3 553 aa28.99■■■□□ 2.23
SF3A1-205ENST00000463818 ANKRD50Q9ULJ7 1429 aa28.99■■■□□ 2.23
SF3A1-205ENST00000463818 POLR1AO95602 1720 aaPredicted RBP28.99■■■□□ 2.23
SF3A1-205ENST00000463818 LTKP29376 864 aa28.98■■■□□ 2.23
SF3A1-205ENST00000463818 STAG3Q9UJ98 1225 aa28.98■■■□□ 2.23
SF3A1-205ENST00000463818 IDI1Q13907 227 aa28.97■■■□□ 2.23
SF3A1-205ENST00000463818 LMTK2Q8IWU2 1503 aa28.97■■■□□ 2.23
SF3A1-205ENST00000463818 VWDEQ8N2E2 1590 aa28.95■■■□□ 2.22
SF3A1-205ENST00000463818 EID1Q9Y6B2 187 aa28.93■■■□□ 2.22
SF3A1-205ENST00000463818 CPS1P31327 1500 aa28.92■■■□□ 2.22
SF3A1-205ENST00000463818 ITGAEP38570 1179 aa28.91■■■□□ 2.22
SF3A1-205ENST00000463818 UBR1Q8IWV7 1749 aa28.89■■■□□ 2.22
SF3A1-205ENST00000463818 SCAF11Q99590 1463 aaKnown RBP28.89■■■□□ 2.22
SF3A1-205ENST00000463818 ARHGAP23Q9P227 1491 aa28.89■■■□□ 2.22
SF3A1-205ENST00000463818 TOM1O60784 492 aa28.88■■■□□ 2.21
SF3A1-205ENST00000463818 TMEM2Q9UHN6 1383 aa28.88■■■□□ 2.21
SF3A1-205ENST00000463818 NOS1P29475 1434 aa28.87■■■□□ 2.21
SF3A1-205ENST00000463818 SLC52A1Q9NWF4 448 aa28.87■■■□□ 2.21
SF3A1-205ENST00000463818 SLIT1O75093 1534 aa28.87■■■□□ 2.21
SF3A1-205ENST00000463818 ROCK1Q13464 1354 aa28.87■■■□□ 2.21
SF3A1-205ENST00000463818 IQGAP1P46940 1657 aa28.85■■■□□ 2.21
SF3A1-205ENST00000463818 PIP4K2BP78356 416 aa28.84■■■□□ 2.21
SF3A1-205ENST00000463818 SCAF1Q9H7N4 1312 aaKnown RBP28.83■■■□□ 2.21
SF3A1-205ENST00000463818 EFCAB6Q5THR3 1501 aa28.83■■■□□ 2.21
SF3A1-205ENST00000463818 PIK3C2BO00750 1634 aa28.82■■■□□ 2.2
SF3A1-205ENST00000463818 DISP3Q9P2K9 1392 aa28.81■■■□□ 2.2
SF3A1-205ENST00000463818 SYNMO15061 1565 aa28.79■■■□□ 2.2
SF3A1-205ENST00000463818 RPRD2Q5VT52 1461 aaKnown RBP28.78■■■□□ 2.2
SF3A1-205ENST00000463818 LRRC7Q96NW7 1537 aa28.74■■■□□ 2.19
SF3A1-205ENST00000463818 NUP155O75694 1391 aa28.74■■■□□ 2.19
SF3A1-205ENST00000463818 HSPA1LP34931 641 aa28.73■■■□□ 2.19
SF3A1-205ENST00000463818 SLC26A8Q96RN1 970 aa28.73■■■□□ 2.19
SF3A1-205ENST00000463818 BCANQ96GW7 911 aa28.7■■■□□ 2.18
SF3A1-205ENST00000463818 CHGAP10645 457 aaKnown RBP28.69■■■□□ 2.18
SF3A1-205ENST00000463818 STRCP1A6NGW2 1772 aa28.69■■■□□ 2.18
SF3A1-205ENST00000463818 TET3O43151 1660 aa28.68■■■□□ 2.18
SF3A1-205ENST00000463818 KDM5AP29375 1690 aaKnown RBP28.68■■■□□ 2.18
SF3A1-205ENST00000463818 UNC13BO14795 1591 aa28.68■■■□□ 2.18
SF3A1-205ENST00000463818 HDGFP51858 240 aaKnown RBP28.68■■■□□ 2.18
SF3A1-205ENST00000463818 ADGRB3O60242 1522 aa28.68■■■□□ 2.18
SF3A1-205ENST00000463818 KCNA6P17658 529 aa28.67■■■□□ 2.18
SF3A1-205ENST00000463818 SENP3Q9H4L4 574 aaPredicted RBP28.66■■■□□ 2.18
SF3A1-205ENST00000463818 ILDR2Q71H61 639 aa28.65■■■□□ 2.18
SF3A1-205ENST00000463818 RRBP1Q9P2E9 1410 aaKnown RBP28.63■■■□□ 2.17
SF3A1-205ENST00000463818 PPP1R15AO75807 674 aaPredicted RBP28.63■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms