RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 PKD2Q13563 968 aa17.01■□□□□ 0.31
HDAC4-208ENST00000463007 HNRNPMP52272 730 aaKnown RBP eCLIP17.01■□□□□ 0.311e-6■■■■□ 25.6
HDAC4-208ENST00000463007 NUP155O75694 1391 aa17■□□□□ 0.31
HDAC4-208ENST00000463007 ABCC1P33527 1531 aa17■□□□□ 0.31
HDAC4-208ENST00000463007 PLEKHH2Q8IVE3 1493 aa17■□□□□ 0.31
HDAC4-208ENST00000463007 PPP4R2Q9NY27 417 aa17■□□□□ 0.31
HDAC4-208ENST00000463007 RSPH4AQ5TD94 716 aa16.99■□□□□ 0.31
HDAC4-208ENST00000463007 ARAP3Q8WWN8 1544 aa16.99■□□□□ 0.31
HDAC4-208ENST00000463007 SALL2Q9Y467 1007 aaPredicted RBP16.99■□□□□ 0.31
HDAC4-208ENST00000463007 PLCH2O75038 1416 aa16.97■□□□□ 0.31
HDAC4-208ENST00000463007 TSPY4P0CV99 314 aa16.96■□□□□ 0.31
HDAC4-208ENST00000463007 TSPY10P0CW01 314 aa16.96■□□□□ 0.31
HDAC4-208ENST00000463007 PLA2R1Q13018 1463 aa16.96■□□□□ 0.31
HDAC4-208ENST00000463007 DUOX2Q9NRD8 1548 aa16.95■□□□□ 0.3
HDAC4-208ENST00000463007 DEKP35659 375 aaKnown RBP16.95■□□□□ 0.3
HDAC4-208ENST00000463007 KIF7Q2M1P5 1343 aa16.94■□□□□ 0.3
HDAC4-208ENST00000463007 FANCIQ9NVI1 1328 aa16.94■□□□□ 0.3
HDAC4-208ENST00000463007 TRPM1Q7Z4N2 1603 aa16.94■□□□□ 0.3
HDAC4-208ENST00000463007 PAK3O75914 559 aaPredicted RBP16.94■□□□□ 0.3
HDAC4-208ENST00000463007 PRKRIP1Q9H875 184 aaPredicted RBP16.94■□□□□ 0.3
HDAC4-208ENST00000463007 ATP10AO60312 1499 aa16.93■□□□□ 0.3
HDAC4-208ENST00000463007 PRKCSHP14314 528 aaPredicted RBP16.93■□□□□ 0.3
HDAC4-208ENST00000463007 NPM2Q86SE8 214 aaKnown RBP16.93■□□□□ 0.3
HDAC4-208ENST00000463007 ERBINQ96RT1 1412 aa16.92■□□□□ 0.3
HDAC4-208ENST00000463007 E9PCH4 1651 aa16.92■□□□□ 0.3
HDAC4-208ENST00000463007 ABCA9Q8IUA7 1624 aa16.92■□□□□ 0.3
HDAC4-208ENST00000463007 LAMC1P11047 1609 aa16.91■□□□□ 0.3
HDAC4-208ENST00000463007 USP47Q96K76 1375 aa16.91■□□□□ 0.3
HDAC4-208ENST00000463007 CCDC136Q96JN2 1154 aa16.9■□□□□ 0.3
HDAC4-208ENST00000463007 DHX29Q7Z478 1369 aaKnown RBP16.9■□□□□ 0.3
HDAC4-208ENST00000463007 DEPDC5O75140 1603 aa16.9■□□□□ 0.3
HDAC4-208ENST00000463007 ZFYVE16Q7Z3T8 1539 aa16.89■□□□□ 0.29
HDAC4-208ENST00000463007 INO80Q9ULG1 1556 aaPredicted RBP16.87■□□□□ 0.29
HDAC4-208ENST00000463007 ARID4BQ4LE39 1312 aaPredicted RBP16.86■□□□□ 0.29
HDAC4-208ENST00000463007 TRAPPC8Q9Y2L5 1435 aa16.86■□□□□ 0.29
HDAC4-208ENST00000463007 PRAG1Q86YV5 1406 aa16.85■□□□□ 0.29
HDAC4-208ENST00000463007 NOP58Q9Y2X3 529 aaKnown RBP16.85■□□□□ 0.29
HDAC4-208ENST00000463007 A2MP01023 1474 aa16.84■□□□□ 0.29
HDAC4-208ENST00000463007 RTEL1-TNFRSF6BF6WH68 1400 aa16.84■□□□□ 0.29
HDAC4-208ENST00000463007 WDR7Q9Y4E6 1490 aa16.84■□□□□ 0.29
HDAC4-208ENST00000463007 RNF17Q9BXT8 1623 aaKnown RBP16.83■□□□□ 0.29
HDAC4-208ENST00000463007 VWDEQ8N2E2 1590 aa16.83■□□□□ 0.28
HDAC4-208ENST00000463007 GPRASP1Q5JY77 1395 aa16.82■□□□□ 0.28
HDAC4-208ENST00000463007 PRDM15P57071 1507 aaPredicted RBP16.81■□□□□ 0.28
HDAC4-208ENST00000463007 CCDC144AA2RUR9 1427 aa16.8■□□□□ 0.28
HDAC4-208ENST00000463007 RTN4Q9NQC3 1192 aaKnown RBP16.79■□□□□ 0.28
HDAC4-208ENST00000463007 KDM2AQ9Y2K7 1162 aa16.79■□□□□ 0.28
HDAC4-208ENST00000463007 EIF2AK4Q9P2K8 1649 aaKnown RBP16.79■□□□□ 0.28
HDAC4-208ENST00000463007 ZBED9Q6R2W3 1325 aa16.78■□□□□ 0.28
HDAC4-208ENST00000463007 CEP152O94986 1710 aa16.78■□□□□ 0.28
HDAC4-208ENST00000463007 MROH1Q8NDA8 1641 aa16.78■□□□□ 0.28
HDAC4-208ENST00000463007 ANP32AP39687 249 aaKnown RBP16.78■□□□□ 0.28
HDAC4-208ENST00000463007 EFCAB2Q5VUJ9 269 aa16.77■□□□□ 0.28
HDAC4-208ENST00000463007 TRPM2O94759 1503 aa16.77■□□□□ 0.28
HDAC4-208ENST00000463007 SPHKAPQ2M3C7 1700 aa16.77■□□□□ 0.27
HDAC4-208ENST00000463007 RTL5Q5HYW3 569 aaPredicted RBP16.77■□□□□ 0.27
HDAC4-208ENST00000463007 TMC1Q8TDI8 760 aa16.77■□□□□ 0.27
HDAC4-208ENST00000463007 TET3O43151 1660 aa16.76■□□□□ 0.27
HDAC4-208ENST00000463007 ATP7AQ04656 1500 aa16.76■□□□□ 0.27
HDAC4-208ENST00000463007 ROCK2O75116 1388 aaKnown RBP16.76■□□□□ 0.27
HDAC4-208ENST00000463007 LAS1LQ9Y4W2 734 aaKnown RBP16.75■□□□□ 0.27
HDAC4-208ENST00000463007 ZBTB47Q9UFB7 747 aaPredicted RBP16.75■□□□□ 0.27
HDAC4-208ENST00000463007 NEURL4Q96JN8 1562 aa16.75■□□□□ 0.27
HDAC4-208ENST00000463007 MADDQ8WXG6 1647 aa16.74■□□□□ 0.27
HDAC4-208ENST00000463007 PTPRTO14522 1441 aa16.74■□□□□ 0.27
HDAC4-208ENST00000463007 FANCAO15360 1455 aa16.73■□□□□ 0.27
HDAC4-208ENST00000463007 DCAF11Q8TEB1 546 aa16.73■□□□□ 0.27
HDAC4-208ENST00000463007 CLTCL1P53675 1640 aa16.72■□□□□ 0.27
HDAC4-208ENST00000463007 IQGAP1P46940 1657 aa16.72■□□□□ 0.27
HDAC4-208ENST00000463007 SKAP1Q86WV1 359 aa16.71■□□□□ 0.27
HDAC4-208ENST00000463007 CARD11Q9BXL7 1154 aa16.71■□□□□ 0.27
HDAC4-208ENST00000463007 KIDINS220Q9ULH0 1771 aa16.71■□□□□ 0.27
HDAC4-208ENST00000463007 COL17A1Q9UMD9 1497 aaPredicted RBP16.7■□□□□ 0.26
HDAC4-208ENST00000463007 ERICH6BQ5W0A0 696 aa16.69■□□□□ 0.26
HDAC4-208ENST00000463007 ASXL2Q76L83 1435 aa16.69■□□□□ 0.26
HDAC4-208ENST00000463007 NUDCQ9Y266 331 aa16.69■□□□□ 0.26
HDAC4-208ENST00000463007 ST20-MTHFSA0A0A6YYL1 179 aa16.68■□□□□ 0.26
HDAC4-208ENST00000463007 SPAG9O60271 1321 aaKnown RBP16.66■□□□□ 0.26
HDAC4-208ENST00000463007 ADGRL1O94910 1474 aa16.66■□□□□ 0.26
HDAC4-208ENST00000463007 IFT172Q9UG01 1749 aa16.66■□□□□ 0.26
HDAC4-208ENST00000463007 KIAA1210Q9ULL0 1709 aa16.65■□□□□ 0.26
HDAC4-208ENST00000463007 AFAP1Q8N556 730 aa16.65■□□□□ 0.26
HDAC4-208ENST00000463007 IPO9Q96P70 1041 aaKnown RBP16.65■□□□□ 0.26
HDAC4-208ENST00000463007 EXOC6Q8TAG9 804 aa16.65■□□□□ 0.26
HDAC4-208ENST00000463007 KTN1Q86UP2 1357 aaKnown RBP16.64■□□□□ 0.25
HDAC4-208ENST00000463007 NBPF1Q3BBV0 1214 aa16.64■□□□□ 0.25
HDAC4-208ENST00000463007 TESK2Q96S53 571 aa16.64■□□□□ 0.25
HDAC4-208ENST00000463007 LMTK2Q8IWU2 1503 aa16.64■□□□□ 0.25
HDAC4-208ENST00000463007 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.63■□□□□ 0.259e-7■■□□□ 12.4
HDAC4-208ENST00000463007 EFCAB6Q5THR3 1501 aa16.63■□□□□ 0.25
HDAC4-208ENST00000463007 PLIN1O60240 522 aa16.63■□□□□ 0.25
HDAC4-208ENST00000463007 CFAP74Q9C0B2 1584 aa16.62■□□□□ 0.25
HDAC4-208ENST00000463007 LRPPRCP42704 1394 aaKnown RBP16.62■□□□□ 0.25
HDAC4-208ENST00000463007 PPRC1Q5VV67 1664 aaKnown RBP16.62■□□□□ 0.25
HDAC4-208ENST00000463007 FRMPD1Q5SYB0 1578 aa16.62■□□□□ 0.25
HDAC4-208ENST00000463007 IL27Q8NEV9 243 aa16.61■□□□□ 0.25
HDAC4-208ENST00000463007 SCAPERQ9BY12 1400 aa16.61■□□□□ 0.25
HDAC4-208ENST00000463007 PARD3Q8TEW0 1356 aa16.6■□□□□ 0.25
HDAC4-208ENST00000463007 DISP3Q9P2K9 1392 aa16.6■□□□□ 0.25
HDAC4-208ENST00000463007 ANO8Q9HCE9 1232 aaPredicted RBP16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms