RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 ABCA6Q8N139 1617 aa11.55□□□□□ -0.56
USP4-207ENST00000462673 ADGRL2O95490 1459 aa11.55□□□□□ -0.56
USP4-207ENST00000462673 PLXNC1O60486 1568 aa11.54□□□□□ -0.56
USP4-207ENST00000462673 ANKRD50Q9ULJ7 1429 aa11.53□□□□□ -0.56
USP4-207ENST00000462673 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.53□□□□□ -0.56
USP4-207ENST00000462673 CROCC2H7BZ55 1655 aa11.52□□□□□ -0.57
USP4-207ENST00000462673 BCORL1Q5H9F3 1711 aa11.52□□□□□ -0.57
USP4-207ENST00000462673 ZMYM3Q14202 1370 aa11.5□□□□□ -0.57
USP4-207ENST00000462673 FAM135AQ9P2D6 1515 aa11.5□□□□□ -0.57
USP4-207ENST00000462673 EIF2AK4Q9P2K8 1649 aaKnown RBP11.49□□□□□ -0.57
USP4-207ENST00000462673 PTPRKQ15262 1439 aa11.49□□□□□ -0.57
USP4-207ENST00000462673 PLPPR3Q6T4P5 718 aa11.48□□□□□ -0.57
USP4-207ENST00000462673 TRIM52Q96A61 297 aa11.48□□□□□ -0.57
USP4-207ENST00000462673 ADAMTSL3P82987 1691 aa11.48□□□□□ -0.57
USP4-207ENST00000462673 PTPRMP28827 1452 aa11.47□□□□□ -0.57
USP4-207ENST00000462673 HFM1A2PYH4 1435 aa11.46□□□□□ -0.57
USP4-207ENST00000462673 NUP155O75694 1391 aa11.45□□□□□ -0.58
USP4-207ENST00000462673 FER1L4A9Z1Z3 1794 aa11.44□□□□□ -0.58
USP4-207ENST00000462673 CEBPAP49715 358 aaPredicted RBP11.44□□□□□ -0.58
USP4-207ENST00000462673 KDM5DQ9BY66 1539 aa11.44□□□□□ -0.58
USP4-207ENST00000462673 NAIPQ13075 1403 aa11.43□□□□□ -0.58
USP4-207ENST00000462673 SETD5Q9C0A6 1442 aa11.43□□□□□ -0.58
USP4-207ENST00000462673 MADDQ8WXG6 1647 aa11.43□□□□□ -0.58
USP4-207ENST00000462673 NPATQ14207 1427 aa11.43□□□□□ -0.58
USP4-207ENST00000462673 RNF17Q9BXT8 1623 aaKnown RBP11.42□□□□□ -0.58
USP4-207ENST00000462673 MROH2AA6NES4 1674 aa11.41□□□□□ -0.58
USP4-207ENST00000462673 RIMS1Q86UR5 1692 aaKnown RBP11.41□□□□□ -0.58
USP4-207ENST00000462673 SLC4A1APQ9BWU0 796 aaKnown RBP11.41□□□□□ -0.58
USP4-207ENST00000462673 SLC52A1Q9NWF4 448 aa11.41□□□□□ -0.58
USP4-207ENST00000462673 ARHGAP31Q2M1Z3 1444 aa11.41□□□□□ -0.58
USP4-207ENST00000462673 SETD1BQ9UPS6 1966 aaKnown RBP11.41□□□□□ -0.58
USP4-207ENST00000462673 SIGLEC1Q9BZZ2 1709 aa11.4□□□□□ -0.58
USP4-207ENST00000462673 ZC3H13Q5T200 1668 aaKnown RBP11.4□□□□□ -0.58
USP4-207ENST00000462673 HDGFP51858 240 aaKnown RBP11.4□□□□□ -0.58
USP4-207ENST00000462673 STAG3Q9UJ98 1225 aa11.4□□□□□ -0.58
USP4-207ENST00000462673 THEMISQ8N1K5 641 aaPredicted RBP11.39□□□□□ -0.59
USP4-207ENST00000462673 CLTCQ00610 1675 aaKnown RBP11.39□□□□□ -0.59
USP4-207ENST00000462673 PRDM15P57071 1507 aaPredicted RBP11.39□□□□□ -0.59
USP4-207ENST00000462673 UHRF1BP1Q6BDS2 1440 aa11.38□□□□□ -0.59
USP4-207ENST00000462673 MYT1Q01538 1121 aa11.38□□□□□ -0.59
USP4-207ENST00000462673 LMTK2Q8IWU2 1503 aa11.38□□□□□ -0.59
USP4-207ENST00000462673 DEPDC5O75140 1603 aa11.38□□□□□ -0.59
USP4-207ENST00000462673 PZPP20742 1482 aa11.38□□□□□ -0.59
USP4-207ENST00000462673 RPRD2Q5VT52 1461 aaKnown RBP11.38□□□□□ -0.59
USP4-207ENST00000462673 SCAF1Q9H7N4 1312 aaKnown RBP11.37□□□□□ -0.59
USP4-207ENST00000462673 ABCC3O15438 1527 aa11.37□□□□□ -0.59
USP4-207ENST00000462673 FBXO31Q5XUX0 539 aaPredicted RBP11.37□□□□□ -0.59
USP4-207ENST00000462673 MPHOSPH9Q99550 1183 aa11.37□□□□□ -0.59
USP4-207ENST00000462673 DMRT2Q9Y5R5 561 aa11.37□□□□□ -0.59
USP4-207ENST00000462673 TNRQ92752 1358 aa11.37□□□□□ -0.59
USP4-207ENST00000462673 GCC2Q8IWJ2 1684 aa11.36□□□□□ -0.59
USP4-207ENST00000462673 PKD2Q13563 968 aa11.35□□□□□ -0.59
USP4-207ENST00000462673 RAB3GAP2Q9H2M9 1393 aa11.35□□□□□ -0.59
USP4-207ENST00000462673 C3P01024 1663 aa11.35□□□□□ -0.59
USP4-207ENST00000462673 UNC13BO14795 1591 aa11.34□□□□□ -0.59
USP4-207ENST00000462673 NLRP1Q9C000 1473 aa11.34□□□□□ -0.59
USP4-207ENST00000462673 VWDEQ8N2E2 1590 aa11.33□□□□□ -0.6
USP4-207ENST00000462673 CAMSAP1Q5T5Y3 1602 aa11.32□□□□□ -0.6
USP4-207ENST00000462673 IQGAP3Q86VI3 1631 aa11.32□□□□□ -0.6
USP4-207ENST00000462673 MROH1Q8NDA8 1641 aa11.32□□□□□ -0.6
USP4-207ENST00000462673 EID1Q9Y6B2 187 aa11.32□□□□□ -0.6
USP4-207ENST00000462673 TET3O43151 1660 aa11.31□□□□□ -0.6
USP4-207ENST00000462673 IDI1Q13907 227 aa11.31□□□□□ -0.6
USP4-207ENST00000462673 ANKLE2Q86XL3 938 aa11.31□□□□□ -0.6
USP4-207ENST00000462673 EFCAB6Q5THR3 1501 aa11.3□□□□□ -0.6
USP4-207ENST00000462673 CHGAP10645 457 aaKnown RBP11.3□□□□□ -0.6
USP4-207ENST00000462673 ERVK-7P63135 1459 aa11.3□□□□□ -0.6
USP4-207ENST00000462673 PREX1Q8TCU6 1659 aa11.3□□□□□ -0.6
USP4-207ENST00000462673 CEP152O94986 1710 aa11.29□□□□□ -0.6
USP4-207ENST00000462673 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.29□□□□□ -0.6
USP4-207ENST00000462673 A2ML1A8K2U0 1454 aa11.29□□□□□ -0.6
USP4-207ENST00000462673 SPATA31D1Q6ZQQ2 1576 aa11.28□□□□□ -0.6
USP4-207ENST00000462673 NOS1P29475 1434 aa11.28□□□□□ -0.6
USP4-207ENST00000462673 ZNF326Q5BKZ1 582 aaKnown RBP11.27□□□□□ -0.61
USP4-207ENST00000462673 CFAP65Q6ZU64 1925 aaKnown RBP11.27□□□□□ -0.61
USP4-207ENST00000462673 UGGT1Q9NYU2 1555 aa11.26□□□□□ -0.61
USP4-207ENST00000462673 HSPA2P54652 639 aa11.26□□□□□ -0.61
USP4-207ENST00000462673 TXNDC2Q86VQ3 553 aa11.26□□□□□ -0.61
USP4-207ENST00000462673 PTPRTO14522 1441 aa11.26□□□□□ -0.61
USP4-207ENST00000462673 LMTK3Q96Q04 1460 aa11.25□□□□□ -0.61
USP4-207ENST00000462673 PPP1R15AO75807 674 aaPredicted RBP11.25□□□□□ -0.61
USP4-207ENST00000462673 BCANQ96GW7 911 aa11.25□□□□□ -0.61
USP4-207ENST00000462673 STAC3Q96MF2 364 aa11.25□□□□□ -0.61
USP4-207ENST00000462673 RPGRIP1LQ68CZ1 1315 aa11.25□□□□□ -0.61
USP4-207ENST00000462673 CCDC144AA2RUR9 1427 aa11.25□□□□□ -0.61
USP4-207ENST00000462673 VGFO15240 615 aaPredicted RBP11.24□□□□□ -0.61
USP4-207ENST00000462673 CEP170BQ9Y4F5 1589 aaPredicted RBP11.24□□□□□ -0.61
USP4-207ENST00000462673 E9PCH4 1651 aa11.24□□□□□ -0.61
USP4-207ENST00000462673 CENPBP07199 599 aaPredicted RBP11.23□□□□□ -0.61
USP4-207ENST00000462673 PLA2R1Q13018 1463 aa11.23□□□□□ -0.61
USP4-207ENST00000462673 MYO3AQ8NEV4 1616 aa11.22□□□□□ -0.61
USP4-207ENST00000462673 KDM5AP29375 1690 aaKnown RBP11.21□□□□□ -0.61
USP4-207ENST00000462673 TMEM2Q9UHN6 1383 aa11.21□□□□□ -0.61
USP4-207ENST00000462673 NCKAP5LQ9HCH0 1330 aa11.2□□□□□ -0.62
USP4-207ENST00000462673 ZNF142P52746 1687 aaPredicted RBP11.2□□□□□ -0.62
USP4-207ENST00000462673 TRPM2O94759 1503 aa11.19□□□□□ -0.62
USP4-207ENST00000462673 SPHKAPQ2M3C7 1700 aa11.18□□□□□ -0.62
USP4-207ENST00000462673 RGL3Q3MIN7 710 aa11.18□□□□□ -0.62
USP4-207ENST00000462673 ANKRD30BQ9BXX2 1392 aa11.17□□□□□ -0.62
USP4-207ENST00000462673 SYNMO15061 1565 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms