RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 A2ML1A8K2U0 1454 aa24.24■■□□□ 1.47
SKA3-204ENST00000462482 FAM135AQ9P2D6 1515 aa24.24■■□□□ 1.47
SKA3-204ENST00000462482 LTBP4Q8N2S1 1624 aa24.24■■□□□ 1.47
SKA3-204ENST00000462482 APLP2Q06481 763 aa24.23■■□□□ 1.47
SKA3-204ENST00000462482 KDM5DQ9BY66 1539 aa24.23■■□□□ 1.47
SKA3-204ENST00000462482 ARHGEF5Q12774 1597 aa24.23■■□□□ 1.47
SKA3-204ENST00000462482 ZNF335Q9H4Z2 1342 aaPredicted RBP24.22■■□□□ 1.47
SKA3-204ENST00000462482 FBXO31Q5XUX0 539 aaPredicted RBP24.22■■□□□ 1.47
SKA3-204ENST00000462482 ZNF142P52746 1687 aaPredicted RBP24.21■■□□□ 1.47
SKA3-204ENST00000462482 TCOF1Q13428 1488 aaKnown RBP24.21■■□□□ 1.47
SKA3-204ENST00000462482 KANK4Q5T7N3 995 aaPredicted RBP24.2■■□□□ 1.46
SKA3-204ENST00000462482 PZPP20742 1482 aa24.19■■□□□ 1.46
SKA3-204ENST00000462482 MAP3K1Q13233 1512 aa24.19■■□□□ 1.46
SKA3-204ENST00000462482 MIA2Q96PC5 1412 aa24.18■■□□□ 1.46
SKA3-204ENST00000462482 THEMISQ8N1K5 641 aaPredicted RBP24.17■■□□□ 1.46
SKA3-204ENST00000462482 MYOM3Q5VTT5 1437 aa24.16■■□□□ 1.46
SKA3-204ENST00000462482 DISP3Q9P2K9 1392 aa24.16■■□□□ 1.46
SKA3-204ENST00000462482 UBAP1LF5GYI3 381 aa24.15■■□□□ 1.46
SKA3-204ENST00000462482 ANKLE2Q86XL3 938 aa24.15■■□□□ 1.46
SKA3-204ENST00000462482 DNMT1P26358 1616 aaKnown RBP24.12■■□□□ 1.45
SKA3-204ENST00000462482 NLRP1Q9C000 1473 aa24.11■■□□□ 1.45
SKA3-204ENST00000462482 MAST1Q9Y2H9 1570 aa24.09■■□□□ 1.45
SKA3-204ENST00000462482 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.09■■□□□ 1.45
SKA3-204ENST00000462482 UGGT1Q9NYU2 1555 aa24.05■■□□□ 1.44
SKA3-204ENST00000462482 ABCC3O15438 1527 aa24.04■■□□□ 1.44
SKA3-204ENST00000462482 DUOX2Q9NRD8 1548 aa24.03■■□□□ 1.44
SKA3-204ENST00000462482 RNF17Q9BXT8 1623 aaKnown RBP24.02■■□□□ 1.44
SKA3-204ENST00000462482 KIF15Q9NS87 1388 aa24.02■■□□□ 1.44
SKA3-204ENST00000462482 RRP7BPQ9NSQ0 103 aa24.01■■□□□ 1.43
SKA3-204ENST00000462482 EIF2AK4Q9P2K8 1649 aaKnown RBP24.01■■□□□ 1.43
SKA3-204ENST00000462482 SCAF1Q9H7N4 1312 aaKnown RBP24.01■■□□□ 1.43
SKA3-204ENST00000462482 TOM1O60784 492 aa24■■□□□ 1.43
SKA3-204ENST00000462482 NPHP4O75161 1426 aaPredicted RBP24■■□□□ 1.43
SKA3-204ENST00000462482 SHANK2Q9UPX8 1470 aa23.99■■□□□ 1.43
SKA3-204ENST00000462482 CPS1P31327 1500 aa23.99■■□□□ 1.43
SKA3-204ENST00000462482 ZC3H13Q5T200 1668 aaKnown RBP23.99■■□□□ 1.43
SKA3-204ENST00000462482 ERVK-7P63135 1459 aa23.98■■□□□ 1.43
SKA3-204ENST00000462482 ABCC5O15440 1437 aa23.97■■□□□ 1.43
SKA3-204ENST00000462482 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.97■■□□□ 1.439e-6■■■□□ 18.9
SKA3-204ENST00000462482 NEURL4Q96JN8 1562 aa23.96■■□□□ 1.43
SKA3-204ENST00000462482 ERBINQ96RT1 1412 aa23.96■■□□□ 1.43
SKA3-204ENST00000462482 KANK1Q14678 1352 aa23.96■■□□□ 1.43
SKA3-204ENST00000462482 SPATA31D1Q6ZQQ2 1576 aa23.95■■□□□ 1.43
SKA3-204ENST00000462482 MED14O60244 1454 aa23.94■■□□□ 1.42
SKA3-204ENST00000462482 POLR1AO95602 1720 aaPredicted RBP23.94■■□□□ 1.42
SKA3-204ENST00000462482 PIP4K2BP78356 416 aa23.94■■□□□ 1.42
SKA3-204ENST00000462482 FGD6Q6ZV73 1430 aa23.93■■□□□ 1.42
SKA3-204ENST00000462482 DAPK1P53355 1430 aa23.93■■□□□ 1.42
SKA3-204ENST00000462482 ANKRD30AQ9BXX3 1397 aa23.92■■□□□ 1.42
SKA3-204ENST00000462482 PTPN23Q9H3S7 1636 aa23.92■■□□□ 1.42
SKA3-204ENST00000462482 ILDR2Q71H61 639 aa23.91■■□□□ 1.42
SKA3-204ENST00000462482 CHIC2Q9UKJ5 165 aa23.91■■□□□ 1.42
SKA3-204ENST00000462482 STAG3Q9UJ98 1225 aa23.9■■□□□ 1.42
SKA3-204ENST00000462482 DEPDC5O75140 1603 aa23.9■■□□□ 1.42
SKA3-204ENST00000462482 ARHGAP31Q2M1Z3 1444 aa23.9■■□□□ 1.42
SKA3-204ENST00000462482 MROH1Q8NDA8 1641 aa23.89■■□□□ 1.42
SKA3-204ENST00000462482 EID1Q9Y6B2 187 aa23.89■■□□□ 1.41
SKA3-204ENST00000462482 SOCS7O14512 581 aa23.87■■□□□ 1.41
SKA3-204ENST00000462482 TXNDC2Q86VQ3 553 aa23.87■■□□□ 1.41
SKA3-204ENST00000462482 PRDM15P57071 1507 aaPredicted RBP23.86■■□□□ 1.41
SKA3-204ENST00000462482 FAM50AQ14320 339 aaKnown RBP23.85■■□□□ 1.41
SKA3-204ENST00000462482 VWDEQ8N2E2 1590 aa23.85■■□□□ 1.41
SKA3-204ENST00000462482 HSPA1LP34931 641 aa23.84■■□□□ 1.41
SKA3-204ENST00000462482 SCAF11Q99590 1463 aaKnown RBP23.83■■□□□ 1.41
SKA3-204ENST00000462482 CEP152O94986 1710 aa23.82■■□□□ 1.4
SKA3-204ENST00000462482 CROCC2H7BZ55 1655 aa23.82■■□□□ 1.4
SKA3-204ENST00000462482 IQGAP1P46940 1657 aa23.82■■□□□ 1.4
SKA3-204ENST00000462482 LTKP29376 864 aa23.79■■□□□ 1.4
SKA3-204ENST00000462482 ARHGAP23Q9P227 1491 aa23.76■■□□□ 1.39
SKA3-204ENST00000462482 SLIT1O75093 1534 aa23.76■■□□□ 1.39
SKA3-204ENST00000462482 TMEM2Q9UHN6 1383 aa23.76■■□□□ 1.39
SKA3-204ENST00000462482 UBR1Q8IWV7 1749 aa23.75■■□□□ 1.39
SKA3-204ENST00000462482 LMTK2Q8IWU2 1503 aa23.74■■□□□ 1.39
SKA3-204ENST00000462482 LRRC7Q96NW7 1537 aa23.74■■□□□ 1.39
SKA3-204ENST00000462482 IDI1Q13907 227 aa23.74■■□□□ 1.39
SKA3-204ENST00000462482 SLC52A1Q9NWF4 448 aa23.72■■□□□ 1.39
SKA3-204ENST00000462482 ADGRL2O95490 1459 aa23.72■■□□□ 1.39
SKA3-204ENST00000462482 SYNMO15061 1565 aa23.7■■□□□ 1.38
SKA3-204ENST00000462482 ANKRD50Q9ULJ7 1429 aa23.7■■□□□ 1.38
SKA3-204ENST00000462482 EFCAB6Q5THR3 1501 aa23.69■■□□□ 1.38
SKA3-204ENST00000462482 BCANQ96GW7 911 aa23.69■■□□□ 1.38
SKA3-204ENST00000462482 SENP3Q9H4L4 574 aaPredicted RBP23.68■■□□□ 1.38
SKA3-204ENST00000462482 PIK3C2BO00750 1634 aa23.67■■□□□ 1.38
SKA3-204ENST00000462482 PHF23Q9BUL5 403 aaPredicted RBP23.67■■□□□ 1.38
SKA3-204ENST00000462482 CFAP65Q6ZU64 1925 aaKnown RBP23.66■■□□□ 1.38
SKA3-204ENST00000462482 NOS1P29475 1434 aa23.66■■□□□ 1.38
SKA3-204ENST00000462482 HDGFP51858 240 aaKnown RBP23.65■■□□□ 1.38
SKA3-204ENST00000462482 KCNA6P17658 529 aa23.63■■□□□ 1.37
SKA3-204ENST00000462482 SLC26A8Q96RN1 970 aa23.63■■□□□ 1.37
SKA3-204ENST00000462482 RPRD2Q5VT52 1461 aaKnown RBP23.62■■□□□ 1.37
SKA3-204ENST00000462482 PPP1R15AO75807 674 aaPredicted RBP23.61■■□□□ 1.37
SKA3-204ENST00000462482 PROSER2Q86WR7 435 aaPredicted RBP23.61■■□□□ 1.37
SKA3-204ENST00000462482 MED1Q15648 1581 aaPredicted RBP23.61■■□□□ 1.37
SKA3-204ENST00000462482 KDM5AP29375 1690 aaKnown RBP23.6■■□□□ 1.37
SKA3-204ENST00000462482 ADGRB3O60242 1522 aa23.59■■□□□ 1.37
SKA3-204ENST00000462482 ALKQ9UM73 1620 aa23.59■■□□□ 1.37
SKA3-204ENST00000462482 STRCP1A6NGW2 1772 aa23.59■■□□□ 1.37
SKA3-204ENST00000462482 TMEM94Q12767 1356 aa23.58■■□□□ 1.37
SKA3-204ENST00000462482 CHGAP10645 457 aaKnown RBP23.57■■□□□ 1.36
SKA3-204ENST00000462482 ROCK1Q13464 1354 aa23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms