RNA–Protein interactions for RNA: ENST00000461409.1

HDAC9-220, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 728 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-220ENST00000461409 ZNF777Q9ULD5 760 aaPredicted RBP13.95□□□□□ -0.18
HDAC9-220ENST00000461409 HSPA2P54652 639 aa13.94□□□□□ -0.18
HDAC9-220ENST00000461409 CFDP1Q9UEE9 299 aaPredicted RBP13.94□□□□□ -0.18
HDAC9-220ENST00000461409 CEP162Q5TB80 1403 aa13.93□□□□□ -0.18
HDAC9-220ENST00000461409 KIAA1107Q9UPP5 1409 aa13.93□□□□□ -0.18
HDAC9-220ENST00000461409 ESF1Q9H501 851 aaKnown RBP13.93□□□□□ -0.18
HDAC9-220ENST00000461409 SYCP2Q9BX26 1530 aa13.93□□□□□ -0.18
HDAC9-220ENST00000461409 SPAG9O60271 1321 aaKnown RBP13.92□□□□□ -0.18
HDAC9-220ENST00000461409 SAMD9LQ8IVG5 1584 aa13.92□□□□□ -0.18
HDAC9-220ENST00000461409 FBXO41Q8TF61 875 aa13.91□□□□□ -0.18
HDAC9-220ENST00000461409 KIDINS220Q9ULH0 1771 aa13.91□□□□□ -0.18
HDAC9-220ENST00000461409 CNTLNQ9NXG0 1405 aa13.9□□□□□ -0.18
HDAC9-220ENST00000461409 EHBP1L1Q8N3D4 1523 aa13.9□□□□□ -0.18
HDAC9-220ENST00000461409 CEBPAP49715 358 aaPredicted RBP13.9□□□□□ -0.18
HDAC9-220ENST00000461409 PROM2Q8N271 834 aa13.9□□□□□ -0.18
HDAC9-220ENST00000461409 PREX1Q8TCU6 1659 aa13.9□□□□□ -0.18
HDAC9-220ENST00000461409 HNRNPMP52272 730 aaKnown RBP eCLIP13.89□□□□□ -0.19
HDAC9-220ENST00000461409 UHRF1BP1Q6BDS2 1440 aa13.89□□□□□ -0.19
HDAC9-220ENST00000461409 ATP7AQ04656 1500 aa13.87□□□□□ -0.19
HDAC9-220ENST00000461409 PRR29P0C7W0 189 aa13.87□□□□□ -0.19
HDAC9-220ENST00000461409 C19orf67A6NJJ6 358 aa13.86□□□□□ -0.19
HDAC9-220ENST00000461409 TIAM1Q13009 1591 aa13.86□□□□□ -0.19
HDAC9-220ENST00000461409 INO80Q9ULG1 1556 aaPredicted RBP13.85□□□□□ -0.19
HDAC9-220ENST00000461409 SETD1BQ9UPS6 1966 aaKnown RBP13.84□□□□□ -0.19
HDAC9-220ENST00000461409 CHADLQ6NUI6 762 aa13.84□□□□□ -0.19
HDAC9-220ENST00000461409 A2MP01023 1474 aa13.84□□□□□ -0.19
HDAC9-220ENST00000461409 C3P01024 1663 aa13.84□□□□□ -0.19
HDAC9-220ENST00000461409 PLXNC1O60486 1568 aa13.83□□□□□ -0.2
HDAC9-220ENST00000461409 STAG3Q9UJ98 1225 aa13.82□□□□□ -0.2
HDAC9-220ENST00000461409 ZNF644Q9H582 1327 aaPredicted RBP13.82□□□□□ -0.2
HDAC9-220ENST00000461409 NPATQ14207 1427 aa13.81□□□□□ -0.2
HDAC9-220ENST00000461409 MBD5Q9P267 1494 aa13.81□□□□□ -0.2
HDAC9-220ENST00000461409 MROH2AA6NES4 1674 aa13.81□□□□□ -0.2
HDAC9-220ENST00000461409 RTEL1-TNFRSF6BF6WH68 1400 aa13.81□□□□□ -0.2
HDAC9-220ENST00000461409 VPS8Q8N3P4 1428 aa13.8□□□□□ -0.2
HDAC9-220ENST00000461409 NCOA2Q15596 1464 aa13.8□□□□□ -0.2
HDAC9-220ENST00000461409 SUPT6HQ7KZ85 1726 aaKnown RBP13.79□□□□□ -0.2
HDAC9-220ENST00000461409 ZMYM3Q14202 1370 aa13.79□□□□□ -0.2
HDAC9-220ENST00000461409 ADGBQ8N7X0 1667 aa13.79□□□□□ -0.2
HDAC9-220ENST00000461409 RSPH4AQ5TD94 716 aa13.78□□□□□ -0.2
HDAC9-220ENST00000461409 CERKQ8TCT0 537 aa13.78□□□□□ -0.2
HDAC9-220ENST00000461409 CAMSAP2Q08AD1 1489 aa13.77□□□□□ -0.21
HDAC9-220ENST00000461409 FKBP8Q14318 412 aa13.77□□□□□ -0.21
HDAC9-220ENST00000461409 GGT6Q6P531 493 aa13.77□□□□□ -0.21
HDAC9-220ENST00000461409 CCDC141Q6ZP82 1450 aa13.77□□□□□ -0.21
HDAC9-220ENST00000461409 PTPRTO14522 1441 aa13.76□□□□□ -0.21
HDAC9-220ENST00000461409 STRCQ7RTU9 1775 aa13.76□□□□□ -0.21
HDAC9-220ENST00000461409 DHX29Q7Z478 1369 aaKnown RBP13.75□□□□□ -0.21
HDAC9-220ENST00000461409 LOC105371045A0A1W2PR82 267 aa13.75□□□□□ -0.21
HDAC9-220ENST00000461409 LRRC9Q6ZRR7 1453 aa13.74□□□□□ -0.21
HDAC9-220ENST00000461409 NCOA1Q15788 1441 aa13.74□□□□□ -0.21
HDAC9-220ENST00000461409 GABBR2O75899 941 aa13.74□□□□□ -0.21
HDAC9-220ENST00000461409 CLTCQ00610 1675 aaKnown RBP13.74□□□□□ -0.21
HDAC9-220ENST00000461409 MAP3K1Q13233 1512 aa13.74□□□□□ -0.21
HDAC9-220ENST00000461409 PTPRKQ15262 1439 aa13.73□□□□□ -0.21
HDAC9-220ENST00000461409 ARHGEF5Q12774 1597 aa13.72□□□□□ -0.21
HDAC9-220ENST00000461409 TSPY4P0CV99 314 aa13.72□□□□□ -0.21
HDAC9-220ENST00000461409 TSPY10P0CW01 314 aa13.72□□□□□ -0.21
HDAC9-220ENST00000461409 FAM135AQ9P2D6 1515 aa13.71□□□□□ -0.21
HDAC9-220ENST00000461409 KIF3BO15066 747 aa13.7□□□□□ -0.22
HDAC9-220ENST00000461409 CAMSAP1Q5T5Y3 1602 aa13.7□□□□□ -0.22
HDAC9-220ENST00000461409 MYO3AQ8NEV4 1616 aa13.69□□□□□ -0.22
HDAC9-220ENST00000461409 ZNF142P52746 1687 aaPredicted RBP13.69□□□□□ -0.22
HDAC9-220ENST00000461409 PLA2R1Q13018 1463 aa13.68□□□□□ -0.22
HDAC9-220ENST00000461409 CEP170BQ9Y4F5 1589 aaPredicted RBP13.68□□□□□ -0.22
HDAC9-220ENST00000461409 MIA2Q96PC5 1412 aa13.68□□□□□ -0.22
HDAC9-220ENST00000461409 KDM5DQ9BY66 1539 aa13.68□□□□□ -0.22
HDAC9-220ENST00000461409 MYOM3Q5VTT5 1437 aa13.67□□□□□ -0.22
HDAC9-220ENST00000461409 PKD2Q13563 968 aa13.67□□□□□ -0.22
HDAC9-220ENST00000461409 CREBZFQ9NS37 354 aa13.67□□□□□ -0.22
HDAC9-220ENST00000461409 WASHC2CQ9Y4E1 1318 aa13.66□□□□□ -0.22
HDAC9-220ENST00000461409 KANK4Q5T7N3 995 aaPredicted RBP13.66□□□□□ -0.22
HDAC9-220ENST00000461409 A2ML1A8K2U0 1454 aa13.65□□□□□ -0.22
HDAC9-220ENST00000461409 PZPP20742 1482 aa13.65□□□□□ -0.22
HDAC9-220ENST00000461409 MAST1Q9Y2H9 1570 aa13.64□□□□□ -0.23
HDAC9-220ENST00000461409 TCOF1Q13428 1488 aaKnown RBP13.64□□□□□ -0.23
HDAC9-220ENST00000461409 TNRQ92752 1358 aa13.64□□□□□ -0.23
HDAC9-220ENST00000461409 NCKAP5LQ9HCH0 1330 aa13.64□□□□□ -0.23
HDAC9-220ENST00000461409 IQSEC2Q5JU85 1478 aa13.63□□□□□ -0.23
HDAC9-220ENST00000461409 LTBP4Q8N2S1 1624 aa13.63□□□□□ -0.23
HDAC9-220ENST00000461409 CD44P16070 742 aaKnown RBP13.61□□□□□ -0.23
HDAC9-220ENST00000461409 FBXO31Q5XUX0 539 aaPredicted RBP13.61□□□□□ -0.23
HDAC9-220ENST00000461409 FARP1Q9Y4F1 1045 aaPredicted RBP13.61□□□□□ -0.23
HDAC9-220ENST00000461409 RNF17Q9BXT8 1623 aaKnown RBP13.61□□□□□ -0.23
HDAC9-220ENST00000461409 DNMT1P26358 1616 aaKnown RBP13.6□□□□□ -0.23
HDAC9-220ENST00000461409 EIF2AK4Q9P2K8 1649 aaKnown RBP13.6□□□□□ -0.23
HDAC9-220ENST00000461409 NLRP1Q9C000 1473 aa13.6□□□□□ -0.23
HDAC9-220ENST00000461409 SHANK2Q9UPX8 1470 aa13.59□□□□□ -0.23
HDAC9-220ENST00000461409 ZC3H13Q5T200 1668 aaKnown RBP13.58□□□□□ -0.24
HDAC9-220ENST00000461409 ABCC3O15438 1527 aa13.58□□□□□ -0.24
HDAC9-220ENST00000461409 DUOX2Q9NRD8 1548 aa13.58□□□□□ -0.24
HDAC9-220ENST00000461409 ZNF335Q9H4Z2 1342 aaPredicted RBP13.58□□□□□ -0.24
HDAC9-220ENST00000461409 THEMISQ8N1K5 641 aaPredicted RBP13.57□□□□□ -0.24
HDAC9-220ENST00000461409 KIF15Q9NS87 1388 aa13.57□□□□□ -0.24
HDAC9-220ENST00000461409 PTPN23Q9H3S7 1636 aa13.55□□□□□ -0.24
HDAC9-220ENST00000461409 LHX8Q68G74 356 aa13.55□□□□□ -0.24
HDAC9-220ENST00000461409 ANKLE2Q86XL3 938 aa13.55□□□□□ -0.24
HDAC9-220ENST00000461409 ABCC5O15440 1437 aa13.55□□□□□ -0.24
HDAC9-220ENST00000461409 FGD6Q6ZV73 1430 aa13.55□□□□□ -0.24
HDAC9-220ENST00000461409 ERBINQ96RT1 1412 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms