RNA–Protein interactions for RNA: ENST00000461187.5

SMPD4-216, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 3

Gene SMPD4, Length 659 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-216ENST00000461187 KDM5DQ9BY66 1539 aa23.37■■□□□ 1.33
SMPD4-216ENST00000461187 TCOF1Q13428 1488 aaKnown RBP23.36■■□□□ 1.33
SMPD4-216ENST00000461187 MAST1Q9Y2H9 1570 aa23.35■■□□□ 1.33
SMPD4-216ENST00000461187 POLR1AO95602 1720 aaPredicted RBP23.35■■□□□ 1.33
SMPD4-216ENST00000461187 A2ML1A8K2U0 1454 aa23.34■■□□□ 1.33
SMPD4-216ENST00000461187 CFAP65Q6ZU64 1925 aaKnown RBP23.33■■□□□ 1.33
SMPD4-216ENST00000461187 IQSEC2Q5JU85 1478 aa23.33■■□□□ 1.33
SMPD4-216ENST00000461187 PZPP20742 1482 aa23.32■■□□□ 1.32
SMPD4-216ENST00000461187 TSPY4P0CV99 314 aa23.32■■□□□ 1.32
SMPD4-216ENST00000461187 TSPY10P0CW01 314 aa23.32■■□□□ 1.32
SMPD4-216ENST00000461187 PKD2Q13563 968 aa23.32■■□□□ 1.32
SMPD4-216ENST00000461187 KANK4Q5T7N3 995 aaPredicted RBP23.32■■□□□ 1.32
SMPD4-216ENST00000461187 RNF17Q9BXT8 1623 aaKnown RBP23.32■■□□□ 1.32
SMPD4-216ENST00000461187 FBXO31Q5XUX0 539 aaPredicted RBP23.29■■□□□ 1.32
SMPD4-216ENST00000461187 EIF2AK4Q9P2K8 1649 aaKnown RBP23.29■■□□□ 1.32
SMPD4-216ENST00000461187 MYOM3Q5VTT5 1437 aa23.28■■□□□ 1.32
SMPD4-216ENST00000461187 ZC3H13Q5T200 1668 aaKnown RBP23.28■■□□□ 1.32
SMPD4-216ENST00000461187 WASHC2CQ9Y4E1 1318 aa23.28■■□□□ 1.32
SMPD4-216ENST00000461187 TNRQ92752 1358 aa23.27■■□□□ 1.32
SMPD4-216ENST00000461187 MIA2Q96PC5 1412 aa23.27■■□□□ 1.32
SMPD4-216ENST00000461187 ZNF335Q9H4Z2 1342 aaPredicted RBP23.27■■□□□ 1.32
SMPD4-216ENST00000461187 CROCC2H7BZ55 1655 aa23.25■■□□□ 1.31
SMPD4-216ENST00000461187 CEP152O94986 1710 aa23.25■■□□□ 1.31
SMPD4-216ENST00000461187 NEURL4Q96JN8 1562 aa23.24■■□□□ 1.31
SMPD4-216ENST00000461187 MROH1Q8NDA8 1641 aa23.23■■□□□ 1.31
SMPD4-216ENST00000461187 ABCC3O15438 1527 aa23.22■■□□□ 1.31
SMPD4-216ENST00000461187 PTPN23Q9H3S7 1636 aa23.19■■□□□ 1.3
SMPD4-216ENST00000461187 NLRP1Q9C000 1473 aa23.19■■□□□ 1.3
SMPD4-216ENST00000461187 SPATA31D1Q6ZQQ2 1576 aa23.18■■□□□ 1.3
SMPD4-216ENST00000461187 UGGT1Q9NYU2 1555 aa23.18■■□□□ 1.3
SMPD4-216ENST00000461187 DUOX2Q9NRD8 1548 aa23.18■■□□□ 1.3
SMPD4-216ENST00000461187 DEPDC5O75140 1603 aa23.16■■□□□ 1.3
SMPD4-216ENST00000461187 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.14■■□□□ 1.29
SMPD4-216ENST00000461187 SHANK2Q9UPX8 1470 aa23.13■■□□□ 1.29
SMPD4-216ENST00000461187 ABCC5O15440 1437 aa23.12■■□□□ 1.29
SMPD4-216ENST00000461187 UBR1Q8IWV7 1749 aa23.12■■□□□ 1.29
SMPD4-216ENST00000461187 THEMISQ8N1K5 641 aaPredicted RBP23.12■■□□□ 1.29
SMPD4-216ENST00000461187 ERVK-7P63135 1459 aa23.11■■□□□ 1.29
SMPD4-216ENST00000461187 IQGAP1P46940 1657 aa23.11■■□□□ 1.29
SMPD4-216ENST00000461187 PRDM15P57071 1507 aaPredicted RBP23.1■■□□□ 1.29
SMPD4-216ENST00000461187 APLP2Q06481 763 aa23.1■■□□□ 1.29
SMPD4-216ENST00000461187 ANKLE2Q86XL3 938 aa23.1■■□□□ 1.29
SMPD4-216ENST00000461187 MED14O60244 1454 aa23.1■■□□□ 1.29
SMPD4-216ENST00000461187 UBAP1LF5GYI3 381 aa23.09■■□□□ 1.29
SMPD4-216ENST00000461187 KIF15Q9NS87 1388 aa23.09■■□□□ 1.29
SMPD4-216ENST00000461187 VWDEQ8N2E2 1590 aa23.09■■□□□ 1.29
SMPD4-216ENST00000461187 CPS1P31327 1500 aa23.08■■□□□ 1.29
SMPD4-216ENST00000461187 DISP3Q9P2K9 1392 aa23.08■■□□□ 1.29
SMPD4-216ENST00000461187 DAPK1P53355 1430 aa23.08■■□□□ 1.28
SMPD4-216ENST00000461187 FGD6Q6ZV73 1430 aa23.08■■□□□ 1.28
SMPD4-216ENST00000461187 ERBINQ96RT1 1412 aa23.07■■□□□ 1.28
SMPD4-216ENST00000461187 STRCP1A6NGW2 1772 aa23.06■■□□□ 1.28
SMPD4-216ENST00000461187 NPHP4O75161 1426 aaPredicted RBP23.06■■□□□ 1.28
SMPD4-216ENST00000461187 RRP7BPQ9NSQ0 103 aa23.04■■□□□ 1.28
SMPD4-216ENST00000461187 ARHGAP31Q2M1Z3 1444 aa23.02■■□□□ 1.28
SMPD4-216ENST00000461187 ILDR2Q71H61 639 aa22.99■■□□□ 1.27
SMPD4-216ENST00000461187 PIK3C2BO00750 1634 aa22.98■■□□□ 1.27
SMPD4-216ENST00000461187 ANKRD30AQ9BXX3 1397 aa22.96■■□□□ 1.27
SMPD4-216ENST00000461187 SLIT1O75093 1534 aa22.95■■□□□ 1.26
SMPD4-216ENST00000461187 KDM5AP29375 1690 aaKnown RBP22.95■■□□□ 1.26
SMPD4-216ENST00000461187 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.95■■□□□ 1.26
SMPD4-216ENST00000461187 ARHGAP23Q9P227 1491 aa22.95■■□□□ 1.26
SMPD4-216ENST00000461187 CHIC2Q9UKJ5 165 aa22.95■■□□□ 1.26
SMPD4-216ENST00000461187 ALKQ9UM73 1620 aa22.94■■□□□ 1.26
SMPD4-216ENST00000461187 LMTK2Q8IWU2 1503 aa22.94■■□□□ 1.26
SMPD4-216ENST00000461187 SYNMO15061 1565 aa22.93■■□□□ 1.26
SMPD4-216ENST00000461187 SCAF11Q99590 1463 aaKnown RBP22.93■■□□□ 1.26
SMPD4-216ENST00000461187 KANK1Q14678 1352 aa22.93■■□□□ 1.26
SMPD4-216ENST00000461187 XIRP1Q702N8 1843 aaKnown RBP22.92■■□□□ 1.26
SMPD4-216ENST00000461187 TOM1O60784 492 aa22.92■■□□□ 1.26
SMPD4-216ENST00000461187 ADGRL2O95490 1459 aa22.92■■□□□ 1.26
SMPD4-216ENST00000461187 LRRC7Q96NW7 1537 aa22.89■■□□□ 1.26
SMPD4-216ENST00000461187 LTKP29376 864 aa22.89■■□□□ 1.25
SMPD4-216ENST00000461187 PIP4K2BP78356 416 aa22.89■■□□□ 1.25
SMPD4-216ENST00000461187 EFCAB6Q5THR3 1501 aa22.88■■□□□ 1.25
SMPD4-216ENST00000461187 SCAF1Q9H7N4 1312 aaKnown RBP22.88■■□□□ 1.25
SMPD4-216ENST00000461187 MYO5BQ9ULV0 1848 aa22.88■■□□□ 1.25
SMPD4-216ENST00000461187 HSPA1LP34931 641 aa22.86■■□□□ 1.25
SMPD4-216ENST00000461187 TXNDC2Q86VQ3 553 aa22.86■■□□□ 1.25
SMPD4-216ENST00000461187 FAM50AQ14320 339 aaKnown RBP22.84■■□□□ 1.25
SMPD4-216ENST00000461187 SOCS7O14512 581 aa22.83■■□□□ 1.25
SMPD4-216ENST00000461187 TMEM2Q9UHN6 1383 aa22.83■■□□□ 1.25
SMPD4-216ENST00000461187 NOS1P29475 1434 aa22.82■■□□□ 1.24
SMPD4-216ENST00000461187 IDI1Q13907 227 aa22.82■■□□□ 1.24
SMPD4-216ENST00000461187 TET3O43151 1660 aa22.81■■□□□ 1.24
SMPD4-216ENST00000461187 GCC2Q8IWJ2 1684 aa22.81■■□□□ 1.24
SMPD4-216ENST00000461187 EID1Q9Y6B2 187 aa22.81■■□□□ 1.24
SMPD4-216ENST00000461187 STAG3Q9UJ98 1225 aa22.8■■□□□ 1.24
SMPD4-216ENST00000461187 ANKRD50Q9ULJ7 1429 aa22.8■■□□□ 1.24
SMPD4-216ENST00000461187 MED1Q15648 1581 aaPredicted RBP22.8■■□□□ 1.24
SMPD4-216ENST00000461187 ADGRB3O60242 1522 aa22.79■■□□□ 1.24
SMPD4-216ENST00000461187 UNC13BO14795 1591 aa22.77■■□□□ 1.24
SMPD4-216ENST00000461187 RPRD2Q5VT52 1461 aaKnown RBP22.77■■□□□ 1.24
SMPD4-216ENST00000461187 E9PCH4 1651 aa22.73■■□□□ 1.23
SMPD4-216ENST00000461187 SLC52A1Q9NWF4 448 aa22.72■■□□□ 1.23
SMPD4-216ENST00000461187 TMEM131LA2VDJ0 1609 aa22.71■■□□□ 1.23
SMPD4-216ENST00000461187 CHD2O14647 1828 aaKnown RBP22.7■■□□□ 1.22
SMPD4-216ENST00000461187 IQGAP3Q86VI3 1631 aa22.69■■□□□ 1.22
SMPD4-216ENST00000461187 NWD1Q149M9 1564 aa22.67■■□□□ 1.22
SMPD4-216ENST00000461187 ROCK1Q13464 1354 aa22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms