RNA–Protein interactions for RNA: ENST00000460097.5

CMTM3-203, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 2 BASIC

Gene CMTM3, Length 1,797 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-203ENST00000460097 KIF15Q9NS87 1388 aa22.72■■□□□ 1.23
CMTM3-203ENST00000460097 PLXNC1O60486 1568 aa22.72■■□□□ 1.23
CMTM3-203ENST00000460097 ADGRL2O95490 1459 aa22.69■■□□□ 1.22
CMTM3-203ENST00000460097 KIF3BO15066 747 aa22.69■■□□□ 1.22
CMTM3-203ENST00000460097 BCORL1Q5H9F3 1711 aa22.69■■□□□ 1.22
CMTM3-203ENST00000460097 DUOX2Q9NRD8 1548 aa22.68■■□□□ 1.22
CMTM3-203ENST00000460097 ROCK1Q13464 1354 aa22.67■■□□□ 1.22
CMTM3-203ENST00000460097 GGT6Q6P531 493 aa22.67■■□□□ 1.22
CMTM3-203ENST00000460097 ADAMTSL3P82987 1691 aa22.64■■□□□ 1.21
CMTM3-203ENST00000460097 ESF1Q9H501 851 aaKnown RBP22.63■■□□□ 1.21
CMTM3-203ENST00000460097 ERBINQ96RT1 1412 aa22.62■■□□□ 1.21
CMTM3-203ENST00000460097 PPP6R1Q9UPN7 881 aa22.61■■□□□ 1.21
CMTM3-203ENST00000460097 ANKRD50Q9ULJ7 1429 aa22.58■■□□□ 1.21
CMTM3-203ENST00000460097 DHX57Q6P158 1386 aaKnown RBP22.58■■□□□ 1.21
CMTM3-203ENST00000460097 MADDQ8WXG6 1647 aa22.58■■□□□ 1.2
CMTM3-203ENST00000460097 EIF2AK4Q9P2K8 1649 aaKnown RBP22.57■■□□□ 1.2
CMTM3-203ENST00000460097 AEBP2Q6ZN18 517 aaPredicted RBP22.55■■□□□ 1.2
CMTM3-203ENST00000460097 FER1L4A9Z1Z3 1794 aa22.54■■□□□ 1.2
CMTM3-203ENST00000460097 SUPT16HQ9Y5B9 1047 aaKnown RBP22.54■■□□□ 1.2
CMTM3-203ENST00000460097 WASHC2CQ9Y4E1 1318 aa22.53■■□□□ 1.2
CMTM3-203ENST00000460097 PTPRMP28827 1452 aa22.53■■□□□ 1.2
CMTM3-203ENST00000460097 CNTLNQ9NXG0 1405 aa22.53■■□□□ 1.2
CMTM3-203ENST00000460097 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.53■■□□□ 1.2
CMTM3-203ENST00000460097 RIMS1Q86UR5 1692 aaKnown RBP22.52■■□□□ 1.2
CMTM3-203ENST00000460097 RNF17Q9BXT8 1623 aaKnown RBP22.51■■□□□ 1.19
CMTM3-203ENST00000460097 PLPPR3Q6T4P5 718 aa22.5■■□□□ 1.19
CMTM3-203ENST00000460097 NAIPQ13075 1403 aa22.5■■□□□ 1.19
CMTM3-203ENST00000460097 HFM1A2PYH4 1435 aa22.49■■□□□ 1.19
CMTM3-203ENST00000460097 CEBPAP49715 358 aaPredicted RBP22.48■■□□□ 1.19
CMTM3-203ENST00000460097 ZMYM3Q14202 1370 aa22.48■■□□□ 1.19
CMTM3-203ENST00000460097 KANK1Q14678 1352 aa22.47■■□□□ 1.19
CMTM3-203ENST00000460097 KDM5DQ9BY66 1539 aa22.45■■□□□ 1.19
CMTM3-203ENST00000460097 FAM135AQ9P2D6 1515 aa22.45■■□□□ 1.19
CMTM3-203ENST00000460097 MROH1Q8NDA8 1641 aa22.45■■□□□ 1.19
CMTM3-203ENST00000460097 CLTCQ00610 1675 aaKnown RBP22.45■■□□□ 1.18
CMTM3-203ENST00000460097 DEPDC5O75140 1603 aa22.44■■□□□ 1.18
CMTM3-203ENST00000460097 PRDM15P57071 1507 aaPredicted RBP22.44■■□□□ 1.18
CMTM3-203ENST00000460097 ABCC3O15438 1527 aa22.41■■□□□ 1.18
CMTM3-203ENST00000460097 MROH2AA6NES4 1674 aa22.41■■□□□ 1.18
CMTM3-203ENST00000460097 GCC2Q8IWJ2 1684 aa22.41■■□□□ 1.18
CMTM3-203ENST00000460097 NUP155O75694 1391 aa22.39■■□□□ 1.17
CMTM3-203ENST00000460097 C3P01024 1663 aa22.38■■□□□ 1.17
CMTM3-203ENST00000460097 ZC3H13Q5T200 1668 aaKnown RBP22.38■■□□□ 1.17
CMTM3-203ENST00000460097 SETD5Q9C0A6 1442 aa22.37■■□□□ 1.17
CMTM3-203ENST00000460097 UNC13BO14795 1591 aa22.37■■□□□ 1.17
CMTM3-203ENST00000460097 VWDEQ8N2E2 1590 aa22.37■■□□□ 1.17
CMTM3-203ENST00000460097 TRIM52Q96A61 297 aa22.36■■□□□ 1.17
CMTM3-203ENST00000460097 CEP152O94986 1710 aa22.35■■□□□ 1.17
CMTM3-203ENST00000460097 FBXO31Q5XUX0 539 aaPredicted RBP22.35■■□□□ 1.17
CMTM3-203ENST00000460097 LMTK2Q8IWU2 1503 aa22.35■■□□□ 1.17
CMTM3-203ENST00000460097 TSHZ2Q9NRE2 1034 aa22.35■■□□□ 1.17
CMTM3-203ENST00000460097 PZPP20742 1482 aa22.33■■□□□ 1.17
CMTM3-203ENST00000460097 ANP32EQ9BTT0 268 aa22.33■■□□□ 1.17
CMTM3-203ENST00000460097 NPATQ14207 1427 aa22.32■■□□□ 1.16
CMTM3-203ENST00000460097 ARHGAP31Q2M1Z3 1444 aa22.32■■□□□ 1.16
CMTM3-203ENST00000460097 CAMSAP1Q5T5Y3 1602 aa22.31■■□□□ 1.16
CMTM3-203ENST00000460097 SETD1BQ9UPS6 1966 aaKnown RBP22.3■■□□□ 1.16
CMTM3-203ENST00000460097 RAB3GAP2Q9H2M9 1393 aa22.29■■□□□ 1.16
CMTM3-203ENST00000460097 IQGAP3Q86VI3 1631 aa22.28■■□□□ 1.16
CMTM3-203ENST00000460097 EFCAB6Q5THR3 1501 aa22.26■■□□□ 1.15
CMTM3-203ENST00000460097 TET3O43151 1660 aa22.25■■□□□ 1.15
CMTM3-203ENST00000460097 TNRQ92752 1358 aa22.25■■□□□ 1.15
CMTM3-203ENST00000460097 CFAP65Q6ZU64 1925 aaKnown RBP22.25■■□□□ 1.15
CMTM3-203ENST00000460097 SLC4A1APQ9BWU0 796 aaKnown RBP22.25■■□□□ 1.15
CMTM3-203ENST00000460097 UHRF1BP1Q6BDS2 1440 aa22.24■■□□□ 1.15
CMTM3-203ENST00000460097 ERVK-7P63135 1459 aa22.23■■□□□ 1.15
CMTM3-203ENST00000460097 RPRD2Q5VT52 1461 aaKnown RBP22.23■■□□□ 1.15
CMTM3-203ENST00000460097 SPATA31D1Q6ZQQ2 1576 aa22.22■■□□□ 1.15
CMTM3-203ENST00000460097 MPHOSPH9Q99550 1183 aa22.2■■□□□ 1.14
CMTM3-203ENST00000460097 PREX1Q8TCU6 1659 aa22.2■■□□□ 1.14
CMTM3-203ENST00000460097 PKD2Q13563 968 aa22.2■■□□□ 1.14
CMTM3-203ENST00000460097 LMTK3Q96Q04 1460 aa22.19■■□□□ 1.14
CMTM3-203ENST00000460097 NOS1P29475 1434 aa22.18■■□□□ 1.14
CMTM3-203ENST00000460097 E9PCH4 1651 aa22.17■■□□□ 1.14
CMTM3-203ENST00000460097 TIMELESSQ9UNS1 1208 aa22.16■■□□□ 1.14
CMTM3-203ENST00000460097 NLRP1Q9C000 1473 aa22.15■■□□□ 1.14
CMTM3-203ENST00000460097 SLC52A1Q9NWF4 448 aa22.15■■□□□ 1.14
CMTM3-203ENST00000460097 HSPA2P54652 639 aa22.15■■□□□ 1.14
CMTM3-203ENST00000460097 MYO3AQ8NEV4 1616 aa22.14■■□□□ 1.14
CMTM3-203ENST00000460097 IDI1Q13907 227 aa22.14■■□□□ 1.13
CMTM3-203ENST00000460097 A2ML1A8K2U0 1454 aa22.13■■□□□ 1.13
CMTM3-203ENST00000460097 FOXD1Q16676 465 aa22.11■■□□□ 1.13
CMTM3-203ENST00000460097 CEP170BQ9Y4F5 1589 aaPredicted RBP22.11■■□□□ 1.13
CMTM3-203ENST00000460097 SYNMO15061 1565 aa22.1■■□□□ 1.13
CMTM3-203ENST00000460097 THEMISQ8N1K5 641 aaPredicted RBP22.1■■□□□ 1.13
CMTM3-203ENST00000460097 PTPRTO14522 1441 aa22.1■■□□□ 1.13
CMTM3-203ENST00000460097 STAG3Q9UJ98 1225 aa22.09■■□□□ 1.13
CMTM3-203ENST00000460097 ZNF142P52746 1687 aaPredicted RBP22.07■■□□□ 1.12
CMTM3-203ENST00000460097 UGGT1Q9NYU2 1555 aa22.07■■□□□ 1.12
CMTM3-203ENST00000460097 CCER2I3L3R5 266 aa22.04■■□□□ 1.12
CMTM3-203ENST00000460097 SPHKAPQ2M3C7 1700 aa22.04■■□□□ 1.12
CMTM3-203ENST00000460097 PLA2R1Q13018 1463 aa22.04■■□□□ 1.12
CMTM3-203ENST00000460097 CHGAP10645 457 aaKnown RBP22.03■■□□□ 1.12
CMTM3-203ENST00000460097 PIK3C2BO00750 1634 aa22.02■■□□□ 1.12
CMTM3-203ENST00000460097 TRPM2O94759 1503 aa22.01■■□□□ 1.11
CMTM3-203ENST00000460097 UBR1Q8IWV7 1749 aa21.99■■□□□ 1.11
CMTM3-203ENST00000460097 ANKLE2Q86XL3 938 aa21.98■■□□□ 1.11
CMTM3-203ENST00000460097 NCKAP5LQ9HCH0 1330 aa21.97■■□□□ 1.11
CMTM3-203ENST00000460097 ADGRB3O60242 1522 aa21.96■■□□□ 1.11
CMTM3-203ENST00000460097 PPP1R15AO75807 674 aaPredicted RBP21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms