RNA–Protein interactions for RNA: ENST00000459994.2

SDF4-204, Transcript of stromal cell derived factor 4, humanhuman

TSL 5

Gene SDF4, Length 604 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-204ENST00000459994 DNMT1P26358 1616 aaKnown RBP24.27■■□□□ 1.48
SDF4-204ENST00000459994 CEP152O94986 1710 aa24.27■■□□□ 1.48
SDF4-204ENST00000459994 EIF2AK4Q9P2K8 1649 aaKnown RBP24.26■■□□□ 1.47
SDF4-204ENST00000459994 APLP2Q06481 763 aa24.26■■□□□ 1.47
SDF4-204ENST00000459994 ABCC5O15440 1437 aa24.25■■□□□ 1.47
SDF4-204ENST00000459994 NCOA1Q15788 1441 aa24.25■■□□□ 1.47
SDF4-204ENST00000459994 FGD6Q6ZV73 1430 aa24.25■■□□□ 1.47
SDF4-204ENST00000459994 PPP6R1Q9UPN7 881 aa24.24■■□□□ 1.47
SDF4-204ENST00000459994 TCOF1Q13428 1488 aaKnown RBP24.24■■□□□ 1.47
SDF4-204ENST00000459994 CFAP65Q6ZU64 1925 aaKnown RBP24.23■■□□□ 1.47
SDF4-204ENST00000459994 FBXO41Q8TF61 875 aa24.22■■□□□ 1.47
SDF4-204ENST00000459994 FAM135AQ9P2D6 1515 aa24.21■■□□□ 1.47
SDF4-204ENST00000459994 FBXO31Q5XUX0 539 aaPredicted RBP24.21■■□□□ 1.47
SDF4-204ENST00000459994 DAPK1P53355 1430 aa24.2■■□□□ 1.46
SDF4-204ENST00000459994 ZC3H13Q5T200 1668 aaKnown RBP24.2■■□□□ 1.46
SDF4-204ENST00000459994 PZPP20742 1482 aa24.19■■□□□ 1.46
SDF4-204ENST00000459994 SHANK2Q9UPX8 1470 aa24.19■■□□□ 1.46
SDF4-204ENST00000459994 ABCC3O15438 1527 aa24.19■■□□□ 1.46
SDF4-204ENST00000459994 DUOX2Q9NRD8 1548 aa24.19■■□□□ 1.46
SDF4-204ENST00000459994 PTPRTO14522 1441 aa24.18■■□□□ 1.46
SDF4-204ENST00000459994 WASHC2CQ9Y4E1 1318 aa24.16■■□□□ 1.46
SDF4-204ENST00000459994 NCKAP5LQ9HCH0 1330 aa24.15■■□□□ 1.46
SDF4-204ENST00000459994 CERKQ8TCT0 537 aa24.15■■□□□ 1.46
SDF4-204ENST00000459994 A2ML1A8K2U0 1454 aa24.14■■□□□ 1.46
SDF4-204ENST00000459994 POLR1AO95602 1720 aaPredicted RBP24.13■■□□□ 1.45
SDF4-204ENST00000459994 TNRQ92752 1358 aa24.13■■□□□ 1.45
SDF4-204ENST00000459994 KIF15Q9NS87 1388 aa24.13■■□□□ 1.45
SDF4-204ENST00000459994 LTBP4Q8N2S1 1624 aa24.13■■□□□ 1.45
SDF4-204ENST00000459994 DMRT2Q9Y5R5 561 aa24.12■■□□□ 1.45
SDF4-204ENST00000459994 DEPDC5O75140 1603 aa24.12■■□□□ 1.45
SDF4-204ENST00000459994 PLA2R1Q13018 1463 aa24.12■■□□□ 1.45
SDF4-204ENST00000459994 RRP7BPQ9NSQ0 103 aa24.11■■□□□ 1.45
SDF4-204ENST00000459994 PRDM15P57071 1507 aaPredicted RBP24.1■■□□□ 1.45
SDF4-204ENST00000459994 CHIC2Q9UKJ5 165 aa24.1■■□□□ 1.45
SDF4-204ENST00000459994 SPATA31D1Q6ZQQ2 1576 aa24.08■■□□□ 1.45
SDF4-204ENST00000459994 NEURL4Q96JN8 1562 aa24.08■■□□□ 1.44
SDF4-204ENST00000459994 ERBINQ96RT1 1412 aa24.07■■□□□ 1.44
SDF4-204ENST00000459994 ERVK-7P63135 1459 aa24.05■■□□□ 1.44
SDF4-204ENST00000459994 FAM50AQ14320 339 aaKnown RBP24.02■■□□□ 1.44
SDF4-204ENST00000459994 UGGT1Q9NYU2 1555 aa24.02■■□□□ 1.44
SDF4-204ENST00000459994 ADGRL2O95490 1459 aa24.01■■□□□ 1.43
SDF4-204ENST00000459994 PPARGC1BQ86YN6 1023 aaKnown RBP24.01■■□□□ 1.43
SDF4-204ENST00000459994 UBR1Q8IWV7 1749 aa24.01■■□□□ 1.43
SDF4-204ENST00000459994 NLRP1Q9C000 1473 aa24■■□□□ 1.43
SDF4-204ENST00000459994 ZNF335Q9H4Z2 1342 aaPredicted RBP24■■□□□ 1.43
SDF4-204ENST00000459994 VWDEQ8N2E2 1590 aa23.99■■□□□ 1.43
SDF4-204ENST00000459994 PKD2Q13563 968 aa23.99■■□□□ 1.43
SDF4-204ENST00000459994 ANKRD30AQ9BXX3 1397 aa23.99■■□□□ 1.43
SDF4-204ENST00000459994 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.99■■□□□ 1.432e-6■■■■□ 19.8
SDF4-204ENST00000459994 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.98■■□□□ 1.43
SDF4-204ENST00000459994 ARHGAP31Q2M1Z3 1444 aa23.93■■□□□ 1.42
SDF4-204ENST00000459994 PIK3C2BO00750 1634 aa23.92■■□□□ 1.42
SDF4-204ENST00000459994 LMTK2Q8IWU2 1503 aa23.92■■□□□ 1.42
SDF4-204ENST00000459994 IQGAP1P46940 1657 aa23.91■■□□□ 1.42
SDF4-204ENST00000459994 SYNMO15061 1565 aa23.9■■□□□ 1.42
SDF4-204ENST00000459994 STRCP1A6NGW2 1772 aa23.89■■□□□ 1.42
SDF4-204ENST00000459994 EFCAB6Q5THR3 1501 aa23.88■■□□□ 1.41
SDF4-204ENST00000459994 THEMISQ8N1K5 641 aaPredicted RBP23.87■■□□□ 1.41
SDF4-204ENST00000459994 MED14O60244 1454 aa23.87■■□□□ 1.41
SDF4-204ENST00000459994 IQSEC2Q5JU85 1478 aa23.87■■□□□ 1.41
SDF4-204ENST00000459994 ANKRD50Q9ULJ7 1429 aa23.86■■□□□ 1.41
SDF4-204ENST00000459994 KANK1Q14678 1352 aa23.86■■□□□ 1.41
SDF4-204ENST00000459994 UNC13BO14795 1591 aa23.86■■□□□ 1.41
SDF4-204ENST00000459994 NPHP4O75161 1426 aaPredicted RBP23.84■■□□□ 1.41
SDF4-204ENST00000459994 MYO5BQ9ULV0 1848 aa23.84■■□□□ 1.41
SDF4-204ENST00000459994 ANKLE2Q86XL3 938 aa23.84■■□□□ 1.41
SDF4-204ENST00000459994 TET3O43151 1660 aa23.83■■□□□ 1.4
SDF4-204ENST00000459994 GCC2Q8IWJ2 1684 aa23.83■■□□□ 1.4
SDF4-204ENST00000459994 ARHGAP23Q9P227 1491 aa23.81■■□□□ 1.4
SDF4-204ENST00000459994 SLIT1O75093 1534 aa23.8■■□□□ 1.4
SDF4-204ENST00000459994 E9PCH4 1651 aa23.79■■□□□ 1.4
SDF4-204ENST00000459994 NOS1P29475 1434 aa23.79■■□□□ 1.4
SDF4-204ENST00000459994 KDM5AP29375 1690 aaKnown RBP23.79■■□□□ 1.4
SDF4-204ENST00000459994 ITGAEP38570 1179 aa23.78■■□□□ 1.4
SDF4-204ENST00000459994 SCAF11Q99590 1463 aaKnown RBP23.76■■□□□ 1.39
SDF4-204ENST00000459994 LTKP29376 864 aa23.76■■□□□ 1.39
SDF4-204ENST00000459994 ROCK1Q13464 1354 aa23.76■■□□□ 1.39
SDF4-204ENST00000459994 IQGAP3Q86VI3 1631 aa23.75■■□□□ 1.39
SDF4-204ENST00000459994 CPS1P31327 1500 aa23.74■■□□□ 1.39
SDF4-204ENST00000459994 IDI1Q13907 227 aa23.74■■□□□ 1.39
SDF4-204ENST00000459994 ADGRB3O60242 1522 aa23.73■■□□□ 1.39
SDF4-204ENST00000459994 XIRP1Q702N8 1843 aaKnown RBP23.72■■□□□ 1.39
SDF4-204ENST00000459994 ALKQ9UM73 1620 aa23.7■■□□□ 1.39
SDF4-204ENST00000459994 RPRD2Q5VT52 1461 aaKnown RBP23.69■■□□□ 1.38
SDF4-204ENST00000459994 RRBP1Q9P2E9 1410 aaKnown RBP23.69■■□□□ 1.38
SDF4-204ENST00000459994 TMEM2Q9UHN6 1383 aa23.69■■□□□ 1.38
SDF4-204ENST00000459994 TXNDC2Q86VQ3 553 aa23.69■■□□□ 1.38
SDF4-204ENST00000459994 UBAP1LF5GYI3 381 aa23.68■■□□□ 1.38
SDF4-204ENST00000459994 TMEM131LA2VDJ0 1609 aa23.67■■□□□ 1.38
SDF4-204ENST00000459994 LRRC7Q96NW7 1537 aa23.64■■□□□ 1.38
SDF4-204ENST00000459994 STAG3Q9UJ98 1225 aa23.64■■□□□ 1.37
SDF4-204ENST00000459994 SPHKAPQ2M3C7 1700 aa23.6■■□□□ 1.37
SDF4-204ENST00000459994 NUP155O75694 1391 aa23.6■■□□□ 1.37
SDF4-204ENST00000459994 EID1Q9Y6B2 187 aa23.59■■□□□ 1.37
SDF4-204ENST00000459994 SENP3Q9H4L4 574 aaPredicted RBP23.58■■□□□ 1.37
SDF4-204ENST00000459994 SLC52A1Q9NWF4 448 aa23.58■■□□□ 1.37
SDF4-204ENST00000459994 ZFYVE9O95405 1425 aa23.58■■□□□ 1.36
SDF4-204ENST00000459994 NAIPQ13075 1403 aa23.56■■□□□ 1.36
SDF4-204ENST00000459994 PIP4K2BP78356 416 aa23.55■■□□□ 1.36
SDF4-204ENST00000459994 SLC26A8Q96RN1 970 aa23.53■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms