RNA–Protein interactions for RNA: ENST00000458530.1

VPS50-207, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 667 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-207ENST00000458530 MYO5CQ9NQX4 1742 aa13.43□□□□□ -0.26
VPS50-207ENST00000458530 C3P01024 1663 aa13.43□□□□□ -0.26
VPS50-207ENST00000458530 TRAPPC8Q9Y2L5 1435 aa13.42□□□□□ -0.26
VPS50-207ENST00000458530 AFAP1Q8N556 730 aa13.41□□□□□ -0.26
VPS50-207ENST00000458530 ABCA6Q8N139 1617 aa13.4□□□□□ -0.26
VPS50-207ENST00000458530 TCOF1Q13428 1488 aaKnown RBP13.4□□□□□ -0.26
VPS50-207ENST00000458530 CDC42BPAQ5VT25 1732 aa13.39□□□□□ -0.27
VPS50-207ENST00000458530 FAM50AQ14320 339 aaKnown RBP13.38□□□□□ -0.27
VPS50-207ENST00000458530 NPATQ14207 1427 aa13.38□□□□□ -0.27
VPS50-207ENST00000458530 ATXN8OSP0DMR3 200 aa13.37□□□□□ -0.27
VPS50-207ENST00000458530 CNTLNQ9NXG0 1405 aa13.37□□□□□ -0.27
VPS50-207ENST00000458530 PREX2Q70Z35 1606 aa13.36□□□□□ -0.27
VPS50-207ENST00000458530 ZEB1P37275 1124 aaPredicted RBP13.36□□□□□ -0.27
VPS50-207ENST00000458530 ARHGAP5Q13017 1502 aa13.35□□□□□ -0.27
VPS50-207ENST00000458530 ABCC1P33527 1531 aa13.34□□□□□ -0.27
VPS50-207ENST00000458530 CDC42BPBQ9Y5S2 1711 aa13.34□□□□□ -0.27
VPS50-207ENST00000458530 HRCP23327 699 aa13.34□□□□□ -0.27
VPS50-207ENST00000458530 DNMT1P26358 1616 aaKnown RBP13.34□□□□□ -0.27
VPS50-207ENST00000458530 KIDINS220Q9ULH0 1771 aa13.33□□□□□ -0.28
VPS50-207ENST00000458530 CAMSAP1Q5T5Y3 1602 aa13.33□□□□□ -0.28
VPS50-207ENST00000458530 MROH2AA6NES4 1674 aa13.33□□□□□ -0.28
VPS50-207ENST00000458530 CROCC2H7BZ55 1655 aa13.32□□□□□ -0.28
VPS50-207ENST00000458530 GCC2Q8IWJ2 1684 aa13.32□□□□□ -0.28
VPS50-207ENST00000458530 ADGBQ8N7X0 1667 aa13.32□□□□□ -0.28
VPS50-207ENST00000458530 PLA2R1Q13018 1463 aa13.32□□□□□ -0.28
VPS50-207ENST00000458530 GPATCH8Q9UKJ3 1502 aaKnown RBP13.32□□□□□ -0.28
VPS50-207ENST00000458530 CAMSAP2Q08AD1 1489 aa13.3□□□□□ -0.28
VPS50-207ENST00000458530 ZNF335Q9H4Z2 1342 aaPredicted RBP13.3□□□□□ -0.28
VPS50-207ENST00000458530 ZNF142P52746 1687 aaPredicted RBP13.3□□□□□ -0.28
VPS50-207ENST00000458530 ITGAEP38570 1179 aa13.29□□□□□ -0.28
VPS50-207ENST00000458530 CCER1Q8TC90 406 aaPredicted RBP13.29□□□□□ -0.28
VPS50-207ENST00000458530 ZMYM3Q14202 1370 aa13.29□□□□□ -0.28
VPS50-207ENST00000458530 CFDP1Q9UEE9 299 aaPredicted RBP13.28□□□□□ -0.28
VPS50-207ENST00000458530 SETD5Q9C0A6 1442 aa13.28□□□□□ -0.28
VPS50-207ENST00000458530 PKD2Q13563 968 aa13.27□□□□□ -0.29
VPS50-207ENST00000458530 SAMD9LQ8IVG5 1584 aa13.27□□□□□ -0.29
VPS50-207ENST00000458530 PLXNC1O60486 1568 aa13.26□□□□□ -0.29
VPS50-207ENST00000458530 ARHGEF5Q12774 1597 aa13.26□□□□□ -0.29
VPS50-207ENST00000458530 PTPRKQ15262 1439 aa13.26□□□□□ -0.29
VPS50-207ENST00000458530 PLEKHH2Q8IVE3 1493 aa13.26□□□□□ -0.29
VPS50-207ENST00000458530 NCKAP5LQ9HCH0 1330 aa13.26□□□□□ -0.29
VPS50-207ENST00000458530 HFM1A2PYH4 1435 aa13.25□□□□□ -0.29
VPS50-207ENST00000458530 DAPK1P53355 1430 aa13.25□□□□□ -0.29
VPS50-207ENST00000458530 ACIN1Q9UKV3 1341 aaKnown RBP13.25□□□□□ -0.29
VPS50-207ENST00000458530 UBAP1LF5GYI3 381 aa13.25□□□□□ -0.29
VPS50-207ENST00000458530 ESF1Q9H501 851 aaKnown RBP13.25□□□□□ -0.29
VPS50-207ENST00000458530 MYO3AQ8NEV4 1616 aa13.24□□□□□ -0.29
VPS50-207ENST00000458530 CEP170BQ9Y4F5 1589 aaPredicted RBP13.24□□□□□ -0.29
VPS50-207ENST00000458530 SHANK2Q9UPX8 1470 aa13.24□□□□□ -0.29
VPS50-207ENST00000458530 ROCK1Q13464 1354 aa13.23□□□□□ -0.29
VPS50-207ENST00000458530 MED1Q15648 1581 aaPredicted RBP13.23□□□□□ -0.29
VPS50-207ENST00000458530 RAB3GAP2Q9H2M9 1393 aa13.22□□□□□ -0.29
VPS50-207ENST00000458530 CLSPNQ9HAW4 1339 aa13.22□□□□□ -0.29
VPS50-207ENST00000458530 MYT1LQ9UL68 1186 aa13.21□□□□□ -0.29
VPS50-207ENST00000458530 INO80Q9ULG1 1556 aaPredicted RBP13.2□□□□□ -0.3
VPS50-207ENST00000458530 KIAA1107Q9UPP5 1409 aa13.2□□□□□ -0.3
VPS50-207ENST00000458530 ADGRL2O95490 1459 aa13.19□□□□□ -0.3
VPS50-207ENST00000458530 CCDC141Q6ZP82 1450 aa13.19□□□□□ -0.3
VPS50-207ENST00000458530 RSPH4AQ5TD94 716 aa13.19□□□□□ -0.3
VPS50-207ENST00000458530 ABCC5O15440 1437 aa13.19□□□□□ -0.3
VPS50-207ENST00000458530 ATP7AQ04656 1500 aa13.18□□□□□ -0.3
VPS50-207ENST00000458530 SYCP2Q9BX26 1530 aa13.18□□□□□ -0.3
VPS50-207ENST00000458530 CLTCQ00610 1675 aaKnown RBP13.18□□□□□ -0.3
VPS50-207ENST00000458530 A2ML1A8K2U0 1454 aa13.18□□□□□ -0.3
VPS50-207ENST00000458530 ALKQ9UM73 1620 aa13.18□□□□□ -0.3
VPS50-207ENST00000458530 HSPA1LP34931 641 aa13.18□□□□□ -0.3
VPS50-207ENST00000458530 ZNF777Q9ULD5 760 aaPredicted RBP13.18□□□□□ -0.3
VPS50-207ENST00000458530 ZBTB12Q9Y330 459 aaPredicted RBP13.18□□□□□ -0.3
VPS50-207ENST00000458530 NAIPQ13075 1403 aa13.18□□□□□ -0.3
VPS50-207ENST00000458530 MAST1Q9Y2H9 1570 aa13.18□□□□□ -0.3
VPS50-207ENST00000458530 CPS1P31327 1500 aa13.18□□□□□ -0.3
VPS50-207ENST00000458530 A2MP01023 1474 aa13.17□□□□□ -0.3
VPS50-207ENST00000458530 NEURL4Q96JN8 1562 aa13.17□□□□□ -0.3
VPS50-207ENST00000458530 SPAG9O60271 1321 aaKnown RBP13.16□□□□□ -0.3
VPS50-207ENST00000458530 RBM42Q9BTD8 480 aaKnown RBP13.16□□□□□ -0.3
VPS50-207ENST00000458530 DHX57Q6P158 1386 aaKnown RBP13.16□□□□□ -0.3
VPS50-207ENST00000458530 ANKRD30AQ9BXX3 1397 aa13.16□□□□□ -0.3
VPS50-207ENST00000458530 ZNF644Q9H582 1327 aaPredicted RBP13.14□□□□□ -0.31
VPS50-207ENST00000458530 VWDEQ8N2E2 1590 aa13.13□□□□□ -0.31
VPS50-207ENST00000458530 MBD5Q9P267 1494 aa13.13□□□□□ -0.31
VPS50-207ENST00000458530 TSPY4P0CV99 314 aa13.13□□□□□ -0.31
VPS50-207ENST00000458530 TSPY10P0CW01 314 aa13.13□□□□□ -0.31
VPS50-207ENST00000458530 TOM1O60784 492 aa13.12□□□□□ -0.31
VPS50-207ENST00000458530 HNRNPMP52272 730 aaKnown RBP eCLIP13.12□□□□□ -0.31
VPS50-207ENST00000458530 MED14O60244 1454 aa13.11□□□□□ -0.31
VPS50-207ENST00000458530 POLR1AO95602 1720 aaPredicted RBP13.11□□□□□ -0.31
VPS50-207ENST00000458530 CHIC2Q9UKJ5 165 aa13.11□□□□□ -0.31
VPS50-207ENST00000458530 FAM135AQ9P2D6 1515 aa13.11□□□□□ -0.31
VPS50-207ENST00000458530 RTEL1-TNFRSF6BF6WH68 1400 aa13.09□□□□□ -0.31
VPS50-207ENST00000458530 RRP7BPQ9NSQ0 103 aa13.09□□□□□ -0.31
VPS50-207ENST00000458530 PZPP20742 1482 aa13.09□□□□□ -0.31
VPS50-207ENST00000458530 GGT6Q6P531 493 aa13.08□□□□□ -0.32
VPS50-207ENST00000458530 DEPDC5O75140 1603 aa13.08□□□□□ -0.32
VPS50-207ENST00000458530 PIP4K2BP78356 416 aa13.07□□□□□ -0.32
VPS50-207ENST00000458530 DHX29Q7Z478 1369 aaKnown RBP13.07□□□□□ -0.32
VPS50-207ENST00000458530 TNRQ92752 1358 aa13.07□□□□□ -0.32
VPS50-207ENST00000458530 MKRN4PQ13434 485 aaPredicted RBP13.06□□□□□ -0.32
VPS50-207ENST00000458530 ANKRD50Q9ULJ7 1429 aa13.05□□□□□ -0.32
VPS50-207ENST00000458530 DUOX2Q9NRD8 1548 aa13.05□□□□□ -0.32
VPS50-207ENST00000458530 FBXO31Q5XUX0 539 aaPredicted RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms