RNA–Protein interactions for RNA: ENST00000456560.6

SEMA3B-209, Transcript of semaphorin 3B, humanhuman

TSL 1 (best) BASIC

Gene SEMA3B, Length 2,221 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3B-209ENST00000456560 PLCH2O75038 1416 aa25.34■■□□□ 1.65
SEMA3B-209ENST00000456560 DHX29Q7Z478 1369 aaKnown RBP25.34■■□□□ 1.65
SEMA3B-209ENST00000456560 BCANQ96GW7 911 aa25.31■■□□□ 1.64
SEMA3B-209ENST00000456560 NPM1P06748 294 aaKnown RBP eCLIP25.29■■□□□ 1.64
SEMA3B-209ENST00000456560 CARD11Q9BXL7 1154 aa25.29■■□□□ 1.64
SEMA3B-209ENST00000456560 IQGAP3Q86VI3 1631 aa25.29■■□□□ 1.64
SEMA3B-209ENST00000456560 DCAF11Q8TEB1 546 aa25.29■■□□□ 1.64
SEMA3B-209ENST00000456560 MRS2Q9HD23 443 aa25.29■■□□□ 1.64
SEMA3B-209ENST00000456560 PLA2R1Q13018 1463 aa25.29■■□□□ 1.64
SEMA3B-209ENST00000456560 DUOX2Q9NRD8 1548 aa25.29■■□□□ 1.64
SEMA3B-209ENST00000456560 KDM2AQ9Y2K7 1162 aa25.27■■□□□ 1.64
SEMA3B-209ENST00000456560 CCDC144AA2RUR9 1427 aa25.26■■□□□ 1.63
SEMA3B-209ENST00000456560 MAGI2Q86UL8 1455 aa25.26■■□□□ 1.63
SEMA3B-209ENST00000456560 EFCAB2Q5VUJ9 269 aa25.25■■□□□ 1.63
SEMA3B-209ENST00000456560 ROCK2O75116 1388 aaKnown RBP25.25■■□□□ 1.63
SEMA3B-209ENST00000456560 ASXL2Q76L83 1435 aa25.24■■□□□ 1.63
SEMA3B-209ENST00000456560 ERBINQ96RT1 1412 aa25.24■■□□□ 1.63
SEMA3B-209ENST00000456560 ABCC1P33527 1531 aa25.24■■□□□ 1.63
SEMA3B-209ENST00000456560 FAM9BQ8IZU0 186 aa25.22■■□□□ 1.63
SEMA3B-209ENST00000456560 WDR7Q9Y4E6 1490 aa25.22■■□□□ 1.63
SEMA3B-209ENST00000456560 PRAG1Q86YV5 1406 aa25.22■■□□□ 1.63
SEMA3B-209ENST00000456560 TRPM1Q7Z4N2 1603 aa25.21■■□□□ 1.63
SEMA3B-209ENST00000456560 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.2■■□□□ 1.622e-7■■■□□ 16.2
SEMA3B-209ENST00000456560 ATP10AO60312 1499 aa25.2■■□□□ 1.62
SEMA3B-209ENST00000456560 ST20-MTHFSA0A0A6YYL1 179 aa25.19■■□□□ 1.62
SEMA3B-209ENST00000456560 TRAPPC8Q9Y2L5 1435 aa25.18■■□□□ 1.62
SEMA3B-209ENST00000456560 ARAP3Q8WWN8 1544 aa25.18■■□□□ 1.62
SEMA3B-209ENST00000456560 ANP32EQ9BTT0 268 aa25.18■■□□□ 1.62
SEMA3B-209ENST00000456560 POLR3GLQ9BT43 218 aa25.17■■□□□ 1.62
SEMA3B-209ENST00000456560 ZBED9Q6R2W3 1325 aa25.17■■□□□ 1.62
SEMA3B-209ENST00000456560 A2MP01023 1474 aa25.16■■□□□ 1.62
SEMA3B-209ENST00000456560 GPRASP1Q5JY77 1395 aa25.14■■□□□ 1.61
SEMA3B-209ENST00000456560 RTEL1-TNFRSF6BF6WH68 1400 aa25.12■■□□□ 1.61
SEMA3B-209ENST00000456560 LAMC1P11047 1609 aa25.11■■□□□ 1.61
SEMA3B-209ENST00000456560 E9PCH4 1651 aa25.11■■□□□ 1.61
SEMA3B-209ENST00000456560 RGL3Q3MIN7 710 aa25.1■■□□□ 1.61
SEMA3B-209ENST00000456560 NBPF1Q3BBV0 1214 aa25.07■■□□□ 1.6
SEMA3B-209ENST00000456560 SPAG9O60271 1321 aaKnown RBP25.07■■□□□ 1.6
SEMA3B-209ENST00000456560 ZFYVE16Q7Z3T8 1539 aa25.07■■□□□ 1.6
SEMA3B-209ENST00000456560 EIF2AK4Q9P2K8 1649 aaKnown RBP25.05■■□□□ 1.6
SEMA3B-209ENST00000456560 PRDM15P57071 1507 aaPredicted RBP25.05■■□□□ 1.6
SEMA3B-209ENST00000456560 KTN1Q86UP2 1357 aaKnown RBP25.04■■□□□ 1.6
SEMA3B-209ENST00000456560 ERICH6BQ5W0A0 696 aa25.04■■□□□ 1.6
SEMA3B-209ENST00000456560 AFAP1Q8N556 730 aa25.04■■□□□ 1.6
SEMA3B-209ENST00000456560 ABCA9Q8IUA7 1624 aa25.03■■□□□ 1.6
SEMA3B-209ENST00000456560 CNGB1Q14028 1251 aaPredicted RBP25.01■■□□□ 1.59
SEMA3B-209ENST00000456560 PNISRQ8TF01 805 aaKnown RBP25.01■■□□□ 1.59
SEMA3B-209ENST00000456560 DEPDC5O75140 1603 aa25■■□□□ 1.59
SEMA3B-209ENST00000456560 RALBP1Q15311 655 aa24.99■■□□□ 1.59
SEMA3B-209ENST00000456560 IRX6P78412 446 aaPredicted RBP24.98■■□□□ 1.59
SEMA3B-209ENST00000456560 INO80Q9ULG1 1556 aaPredicted RBP24.98■■□□□ 1.59
SEMA3B-209ENST00000456560 FANCAO15360 1455 aa24.97■■□□□ 1.59
SEMA3B-209ENST00000456560 COL17A1Q9UMD9 1497 aaPredicted RBP24.97■■□□□ 1.59
SEMA3B-209ENST00000456560 TESK2Q96S53 571 aa24.97■■□□□ 1.59
SEMA3B-209ENST00000456560 PTPRTO14522 1441 aa24.96■■□□□ 1.59
SEMA3B-209ENST00000456560 RNF17Q9BXT8 1623 aaKnown RBP24.96■■□□□ 1.59
SEMA3B-209ENST00000456560 BRD4O60885 1362 aaPredicted RBP24.96■■□□□ 1.59
SEMA3B-209ENST00000456560 MYBBP1AQ9BQG0 1328 aaKnown RBP24.96■■□□□ 1.59
SEMA3B-209ENST00000456560 TRPM2O94759 1503 aa24.96■■□□□ 1.59
SEMA3B-209ENST00000456560 SMG6Q86US8 1419 aaKnown RBP24.95■■□□□ 1.59
SEMA3B-209ENST00000456560 ATP7AQ04656 1500 aa24.95■■□□□ 1.58
SEMA3B-209ENST00000456560 TMC1Q8TDI8 760 aa24.94■■□□□ 1.58
SEMA3B-209ENST00000456560 VWDEQ8N2E2 1590 aa24.93■■□□□ 1.58
SEMA3B-209ENST00000456560 LRPPRCP42704 1394 aaKnown RBP24.93■■□□□ 1.58
SEMA3B-209ENST00000456560 CD109Q6YHK3 1445 aa24.93■■□□□ 1.58
SEMA3B-209ENST00000456560 RBM19Q9Y4C8 960 aaKnown RBP24.93■■□□□ 1.58
SEMA3B-209ENST00000456560 TET3O43151 1660 aa24.92■■□□□ 1.58
SEMA3B-209ENST00000456560 SPHKAPQ2M3C7 1700 aa24.92■■□□□ 1.58
SEMA3B-209ENST00000456560 DISP3Q9P2K9 1392 aa24.91■■□□□ 1.58
SEMA3B-209ENST00000456560 PER1O15534 1290 aaPredicted RBP24.91■■□□□ 1.58
SEMA3B-209ENST00000456560 FAM69CQ0P6D2 419 aa24.91■■□□□ 1.58
SEMA3B-209ENST00000456560 PARD3Q8TEW0 1356 aa24.9■■□□□ 1.58
SEMA3B-209ENST00000456560 CEP152O94986 1710 aa24.9■■□□□ 1.58
SEMA3B-209ENST00000456560 MADDQ8WXG6 1647 aa24.9■■□□□ 1.58
SEMA3B-209ENST00000456560 DNAJC5Q9H3Z4 198 aa24.9■■□□□ 1.58
SEMA3B-209ENST00000456560 PPP4R2Q9NY27 417 aa24.89■■□□□ 1.58
SEMA3B-209ENST00000456560 ADGRL1O94910 1474 aa24.89■■□□□ 1.58
SEMA3B-209ENST00000456560 SCAPERQ9BY12 1400 aa24.89■■□□□ 1.57
SEMA3B-209ENST00000456560 CLTCL1P53675 1640 aa24.87■■□□□ 1.57
SEMA3B-209ENST00000456560 STAC3Q96MF2 364 aa24.86■■□□□ 1.57
SEMA3B-209ENST00000456560 NUDCQ9Y266 331 aa24.86■■□□□ 1.57
SEMA3B-209ENST00000456560 WASHC2CQ9Y4E1 1318 aa24.85■■□□□ 1.57
SEMA3B-209ENST00000456560 KANK1Q14678 1352 aa24.85■■□□□ 1.57
SEMA3B-209ENST00000456560 TMF1P82094 1093 aa24.84■■□□□ 1.57
SEMA3B-209ENST00000456560 IQGAP1P46940 1657 aa24.83■■□□□ 1.57
SEMA3B-209ENST00000456560 MROH1Q8NDA8 1641 aa24.83■■□□□ 1.57
SEMA3B-209ENST00000456560 DIP2BQ9P265 1576 aa24.83■■□□□ 1.57
SEMA3B-209ENST00000456560 NLRP13Q86W25 1043 aa24.82■■□□□ 1.56
SEMA3B-209ENST00000456560 RNF123Q5XPI4 1314 aa24.81■■□□□ 1.56
SEMA3B-209ENST00000456560 NEURL4Q96JN8 1562 aa24.81■■□□□ 1.56
SEMA3B-209ENST00000456560 KIF3BO15066 747 aa24.81■■□□□ 1.56
SEMA3B-209ENST00000456560 PANK3Q9H999 370 aa24.78■■□□□ 1.56
SEMA3B-209ENST00000456560 KIDINS220Q9ULH0 1771 aa24.78■■□□□ 1.56
SEMA3B-209ENST00000456560 MAP3K4Q9Y6R4 1608 aa24.77■■□□□ 1.56
SEMA3B-209ENST00000456560 GLI2P10070 1586 aa24.76■■□□□ 1.55
SEMA3B-209ENST00000456560 SCAF11Q99590 1463 aaKnown RBP24.75■■□□□ 1.55
SEMA3B-209ENST00000456560 TSPOAP1O95153 1857 aa24.75■■□□□ 1.55
SEMA3B-209ENST00000456560 MYT1LQ9UL68 1186 aa24.74■■□□□ 1.55
SEMA3B-209ENST00000456560 KIAA1210Q9ULL0 1709 aa24.74■■□□□ 1.55
SEMA3B-209ENST00000456560 ZNF518AQ6AHZ1 1483 aa24.72■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms