RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 DCAF11Q8TEB1 546 aa20.78■□□□□ 0.92
LDLR-202ENST00000455727 CARD11Q9BXL7 1154 aa20.78■□□□□ 0.92
LDLR-202ENST00000455727 ROCK2O75116 1388 aaKnown RBP20.78■□□□□ 0.92
LDLR-202ENST00000455727 RTEL1-TNFRSF6BF6WH68 1400 aa20.77■□□□□ 0.92
LDLR-202ENST00000455727 HNRNPUQ00839 825 aaKnown RBP eCLIP20.77■□□□□ 0.92
LDLR-202ENST00000455727 DHX29Q7Z478 1369 aaKnown RBP20.76■□□□□ 0.91
LDLR-202ENST00000455727 TRPM1Q7Z4N2 1603 aa20.76■□□□□ 0.91
LDLR-202ENST00000455727 TRAPPC8Q9Y2L5 1435 aa20.76■□□□□ 0.91
LDLR-202ENST00000455727 KDM2AQ9Y2K7 1162 aa20.75■□□□□ 0.91
LDLR-202ENST00000455727 PRAG1Q86YV5 1406 aa20.75■□□□□ 0.91
LDLR-202ENST00000455727 WDR7Q9Y4E6 1490 aa20.74■□□□□ 0.91
LDLR-202ENST00000455727 CCDC184Q52MB2 194 aa20.74■□□□□ 0.91
LDLR-202ENST00000455727 NEFLP07196 543 aa20.73■□□□□ 0.91
LDLR-202ENST00000455727 FKBP8Q14318 412 aa20.73■□□□□ 0.91
LDLR-202ENST00000455727 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.73■□□□□ 0.917e-10■■□□□ 13.2
LDLR-202ENST00000455727 LAMC1P11047 1609 aa20.71■□□□□ 0.91
LDLR-202ENST00000455727 MRS2Q9HD23 443 aa20.71■□□□□ 0.91
LDLR-202ENST00000455727 ABCA9Q8IUA7 1624 aa20.71■□□□□ 0.91
LDLR-202ENST00000455727 A2MP01023 1474 aa20.7■□□□□ 0.9
LDLR-202ENST00000455727 ZFYVE16Q7Z3T8 1539 aa20.7■□□□□ 0.9
LDLR-202ENST00000455727 GPRASP1Q5JY77 1395 aa20.69■□□□□ 0.9
LDLR-202ENST00000455727 SPAG9O60271 1321 aaKnown RBP20.69■□□□□ 0.9
LDLR-202ENST00000455727 ST20-MTHFSA0A0A6YYL1 179 aa20.68■□□□□ 0.9
LDLR-202ENST00000455727 EIF2AK4Q9P2K8 1649 aaKnown RBP20.67■□□□□ 0.9
LDLR-202ENST00000455727 DEPDC5O75140 1603 aa20.66■□□□□ 0.9
LDLR-202ENST00000455727 FANCAO15360 1455 aa20.65■□□□□ 0.9
LDLR-202ENST00000455727 E9PCH4 1651 aa20.65■□□□□ 0.9
LDLR-202ENST00000455727 INO80Q9ULG1 1556 aaPredicted RBP20.64■□□□□ 0.9
LDLR-202ENST00000455727 ZBED9Q6R2W3 1325 aa20.63■□□□□ 0.89
LDLR-202ENST00000455727 FAM9BQ8IZU0 186 aa20.63■□□□□ 0.89
LDLR-202ENST00000455727 AFAP1Q8N556 730 aa20.63■□□□□ 0.89
LDLR-202ENST00000455727 RGL3Q3MIN7 710 aa20.62■□□□□ 0.89
LDLR-202ENST00000455727 PRDM15P57071 1507 aaPredicted RBP20.62■□□□□ 0.89
LDLR-202ENST00000455727 KTN1Q86UP2 1357 aaKnown RBP20.62■□□□□ 0.89
LDLR-202ENST00000455727 POLR3GLQ9BT43 218 aa20.62■□□□□ 0.89
LDLR-202ENST00000455727 ATP7AQ04656 1500 aa20.61■□□□□ 0.89
LDLR-202ENST00000455727 TRPM2O94759 1503 aa20.59■□□□□ 0.89
LDLR-202ENST00000455727 ASXL2Q76L83 1435 aa20.59■□□□□ 0.89
LDLR-202ENST00000455727 TET3O43151 1660 aa20.59■□□□□ 0.89
LDLR-202ENST00000455727 SPHKAPQ2M3C7 1700 aa20.58■□□□□ 0.88
LDLR-202ENST00000455727 PTPRTO14522 1441 aa20.58■□□□□ 0.88
LDLR-202ENST00000455727 VWDEQ8N2E2 1590 aa20.58■□□□□ 0.88
LDLR-202ENST00000455727 CEP152O94986 1710 aa20.57■□□□□ 0.88
LDLR-202ENST00000455727 NBPF1Q3BBV0 1214 aa20.57■□□□□ 0.88
LDLR-202ENST00000455727 BCANQ96GW7 911 aa20.57■□□□□ 0.88
LDLR-202ENST00000455727 ADGRL1O94910 1474 aa20.57■□□□□ 0.88
LDLR-202ENST00000455727 STAC3Q96MF2 364 aa20.56■□□□□ 0.88
LDLR-202ENST00000455727 RNF17Q9BXT8 1623 aaKnown RBP20.56■□□□□ 0.88
LDLR-202ENST00000455727 SCAPERQ9BY12 1400 aa20.55■□□□□ 0.88
LDLR-202ENST00000455727 RALBP1Q15311 655 aa20.54■□□□□ 0.88
LDLR-202ENST00000455727 KANK1Q14678 1352 aa20.53■□□□□ 0.88
LDLR-202ENST00000455727 ERICH6BQ5W0A0 696 aa20.53■□□□□ 0.88
LDLR-202ENST00000455727 COL17A1Q9UMD9 1497 aaPredicted RBP20.53■□□□□ 0.88
LDLR-202ENST00000455727 NEURL4Q96JN8 1562 aa20.52■□□□□ 0.88
LDLR-202ENST00000455727 OSCARQ8IYS5 282 aa20.52■□□□□ 0.87
LDLR-202ENST00000455727 TESK2Q96S53 571 aa20.51■□□□□ 0.87
LDLR-202ENST00000455727 MADDQ8WXG6 1647 aa20.51■□□□□ 0.87
LDLR-202ENST00000455727 MYT1Q01538 1121 aa20.5■□□□□ 0.87
LDLR-202ENST00000455727 TSHZ2Q9NRE2 1034 aa20.5■□□□□ 0.87
LDLR-202ENST00000455727 PNISRQ8TF01 805 aaKnown RBP20.5■□□□□ 0.87
LDLR-202ENST00000455727 BRD4O60885 1362 aaPredicted RBP20.5■□□□□ 0.87
LDLR-202ENST00000455727 CLTCL1P53675 1640 aa20.49■□□□□ 0.87
LDLR-202ENST00000455727 MYBBP1AQ9BQG0 1328 aaKnown RBP20.49■□□□□ 0.87
LDLR-202ENST00000455727 KIDINS220Q9ULH0 1771 aa20.48■□□□□ 0.87
LDLR-202ENST00000455727 MROH1Q8NDA8 1641 aa20.48■□□□□ 0.87
LDLR-202ENST00000455727 WASHC2CQ9Y4E1 1318 aa20.48■□□□□ 0.87
LDLR-202ENST00000455727 TMC1Q8TDI8 760 aa20.48■□□□□ 0.87
LDLR-202ENST00000455727 CFAP74Q9C0B2 1584 aa20.47■□□□□ 0.87
LDLR-202ENST00000455727 NPM1P06748 294 aaKnown RBP eCLIP20.47■□□□□ 0.87
LDLR-202ENST00000455727 ZNF518AQ6AHZ1 1483 aa20.46■□□□□ 0.87
LDLR-202ENST00000455727 IQGAP1P46940 1657 aa20.46■□□□□ 0.87
LDLR-202ENST00000455727 KIF3BO15066 747 aa20.45■□□□□ 0.87
LDLR-202ENST00000455727 PER1O15534 1290 aaPredicted RBP20.45■□□□□ 0.86
LDLR-202ENST00000455727 LRPPRCP42704 1394 aaKnown RBP20.45■□□□□ 0.86
LDLR-202ENST00000455727 PARD3Q8TEW0 1356 aa20.44■□□□□ 0.86
LDLR-202ENST00000455727 TMF1P82094 1093 aa20.44■□□□□ 0.86
LDLR-202ENST00000455727 DISP3Q9P2K9 1392 aa20.44■□□□□ 0.86
LDLR-202ENST00000455727 KIAA1210Q9ULL0 1709 aa20.44■□□□□ 0.86
LDLR-202ENST00000455727 SMG6Q86US8 1419 aaKnown RBP20.44■□□□□ 0.86
LDLR-202ENST00000455727 CNGB1Q14028 1251 aaPredicted RBP20.42■□□□□ 0.86
LDLR-202ENST00000455727 LMTK2Q8IWU2 1503 aa20.42■□□□□ 0.86
LDLR-202ENST00000455727 MYT1LQ9UL68 1186 aa20.41■□□□□ 0.86
LDLR-202ENST00000455727 EFCAB6Q5THR3 1501 aa20.41■□□□□ 0.86
LDLR-202ENST00000455727 CD109Q6YHK3 1445 aa20.39■□□□□ 0.85
LDLR-202ENST00000455727 NLRP13Q86W25 1043 aa20.39■□□□□ 0.85
LDLR-202ENST00000455727 KIF1BO60333 1816 aa20.39■□□□□ 0.85
LDLR-202ENST00000455727 SCAF11Q99590 1463 aaKnown RBP20.38■□□□□ 0.85
LDLR-202ENST00000455727 MLH3Q9UHC1 1453 aa20.38■□□□□ 0.85
LDLR-202ENST00000455727 POGZQ7Z3K3 1410 aa20.37■□□□□ 0.85
LDLR-202ENST00000455727 NUDCQ9Y266 331 aa20.36■□□□□ 0.85
LDLR-202ENST00000455727 MYOM2P54296 1465 aa20.35■□□□□ 0.85
LDLR-202ENST00000455727 PPRC1Q5VV67 1664 aaKnown RBP20.35■□□□□ 0.85
LDLR-202ENST00000455727 PPP4R2Q9NY27 417 aa20.35■□□□□ 0.85
LDLR-202ENST00000455727 PANK3Q9H999 370 aa20.34■□□□□ 0.85
LDLR-202ENST00000455727 IFT172Q9UG01 1749 aa20.34■□□□□ 0.85
LDLR-202ENST00000455727 MAP3K4Q9Y6R4 1608 aa20.34■□□□□ 0.85
LDLR-202ENST00000455727 IRX6P78412 446 aaPredicted RBP20.33■□□□□ 0.85
LDLR-202ENST00000455727 HECW2Q9P2P5 1572 aa20.33■□□□□ 0.85
LDLR-202ENST00000455727 CDCA8Q53HL2 280 aa20.33■□□□□ 0.84
LDLR-202ENST00000455727 INSRP06213 1382 aa20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms