RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 KTN1Q86UP2 1357 aaKnown RBP15.97■□□□□ 0.15
SMPD4-213ENST00000454468 TEX14Q8IWB6 1497 aa15.96■□□□□ 0.15
SMPD4-213ENST00000454468 CCDC141Q6ZP82 1450 aa15.96■□□□□ 0.15
SMPD4-213ENST00000454468 NUDCQ9Y266 331 aa15.96■□□□□ 0.15
SMPD4-213ENST00000454468 PLIN1O60240 522 aa15.95■□□□□ 0.14
SMPD4-213ENST00000454468 GCC2Q8IWJ2 1684 aa15.95■□□□□ 0.14
SMPD4-213ENST00000454468 MYBBP1AQ9BQG0 1328 aaKnown RBP15.94■□□□□ 0.14
SMPD4-213ENST00000454468 PNISRQ8TF01 805 aaKnown RBP15.94■□□□□ 0.14
SMPD4-213ENST00000454468 CDCA7LQ96GN5 454 aa15.94■□□□□ 0.14
SMPD4-213ENST00000454468 RALBP1Q15311 655 aa15.93■□□□□ 0.14
SMPD4-213ENST00000454468 CCDC146Q8IYE0 955 aa15.93■□□□□ 0.14
SMPD4-213ENST00000454468 KDM5BQ9UGL1 1544 aa15.93■□□□□ 0.14
SMPD4-213ENST00000454468 NLRP13Q86W25 1043 aa15.93■□□□□ 0.14
SMPD4-213ENST00000454468 TRAK1Q9UPV9 953 aa15.93■□□□□ 0.14
SMPD4-213ENST00000454468 SCAPERQ9BY12 1400 aa15.93■□□□□ 0.14
SMPD4-213ENST00000454468 SYCP2Q9BX26 1530 aa15.93■□□□□ 0.14
SMPD4-213ENST00000454468 CFAP70Q5T0N1 1121 aa15.92■□□□□ 0.14
SMPD4-213ENST00000454468 STAG3Q9UJ98 1225 aa15.92■□□□□ 0.14
SMPD4-213ENST00000454468 STK26Q9P289 416 aa15.92■□□□□ 0.14
SMPD4-213ENST00000454468 KANK1Q14678 1352 aa15.91■□□□□ 0.14
SMPD4-213ENST00000454468 MLECQ14165 292 aa15.91■□□□□ 0.14
SMPD4-213ENST00000454468 CYB5RLQ6IPT4 315 aa15.89■□□□□ 0.13
SMPD4-213ENST00000454468 TMEM132EQ6IEE7 984 aa15.89■□□□□ 0.13
SMPD4-213ENST00000454468 ERCC6L2Q5T890 1561 aa15.89■□□□□ 0.13
SMPD4-213ENST00000454468 ITSN2Q9NZM3 1697 aa15.89■□□□□ 0.13
SMPD4-213ENST00000454468 RCAN3Q9UKA8 241 aa15.88■□□□□ 0.13
SMPD4-213ENST00000454468 OSCARQ8IYS5 282 aa15.87■□□□□ 0.13
SMPD4-213ENST00000454468 ABCC10Q5T3U5 1492 aa15.87■□□□□ 0.13
SMPD4-213ENST00000454468 RAPGEF3O95398 923 aa15.87■□□□□ 0.13
SMPD4-213ENST00000454468 TRAPPC8Q9Y2L5 1435 aa15.87■□□□□ 0.13
SMPD4-213ENST00000454468 CANXP27824 592 aaKnown RBP15.86■□□□□ 0.13
SMPD4-213ENST00000454468 EXOC6Q8TAG9 804 aa15.86■□□□□ 0.13
SMPD4-213ENST00000454468 WASHC2CQ9Y4E1 1318 aa15.86■□□□□ 0.13
SMPD4-213ENST00000454468 NBR1Q14596 966 aa15.86■□□□□ 0.13
SMPD4-213ENST00000454468 SPATA31E1Q6ZUB1 1445 aa15.85■□□□□ 0.13
SMPD4-213ENST00000454468 DHX29Q7Z478 1369 aaKnown RBP15.84■□□□□ 0.13
SMPD4-213ENST00000454468 DISP3Q9P2K9 1392 aa15.84■□□□□ 0.13
SMPD4-213ENST00000454468 ABCA8O94911 1581 aa15.84■□□□□ 0.13
SMPD4-213ENST00000454468 ADAMTS8Q9UP79 889 aa15.84■□□□□ 0.13
SMPD4-213ENST00000454468 MBD5Q9P267 1494 aa15.83■□□□□ 0.13
SMPD4-213ENST00000454468 CDCA8Q53HL2 280 aa15.83■□□□□ 0.12
SMPD4-213ENST00000454468 FAM135AQ9P2D6 1515 aa15.83■□□□□ 0.12
SMPD4-213ENST00000454468 ADGRL2O95490 1459 aa15.82■□□□□ 0.12
SMPD4-213ENST00000454468 ARID4BQ4LE39 1312 aaPredicted RBP15.8■□□□□ 0.12
SMPD4-213ENST00000454468 RRP7AQ9Y3A4 280 aaKnown RBP15.8■□□□□ 0.12
SMPD4-213ENST00000454468 PPM1GO15355 546 aaPredicted RBP15.79■□□□□ 0.12
SMPD4-213ENST00000454468 ANP32AP39687 249 aaKnown RBP15.79■□□□□ 0.12
SMPD4-213ENST00000454468 SKAP1Q86WV1 359 aa15.79■□□□□ 0.12
SMPD4-213ENST00000454468 TESK2Q96S53 571 aa15.77■□□□□ 0.12
SMPD4-213ENST00000454468 ADGRF5Q8IZF2 1346 aa15.77■□□□□ 0.12
SMPD4-213ENST00000454468 CDC42BPAQ5VT25 1732 aa15.77■□□□□ 0.12
SMPD4-213ENST00000454468 PLCH2O75038 1416 aa15.76■□□□□ 0.11
SMPD4-213ENST00000454468 MORC1Q86VD1 984 aa15.76■□□□□ 0.11
SMPD4-213ENST00000454468 ERBINQ96RT1 1412 aa15.76■□□□□ 0.11
SMPD4-213ENST00000454468 APAF1O14727 1248 aa15.76■□□□□ 0.11
SMPD4-213ENST00000454468 RRP1P56182 461 aaKnown RBP15.76■□□□□ 0.11
SMPD4-213ENST00000454468 RALGAPBQ86X10 1494 aa15.76■□□□□ 0.11
SMPD4-213ENST00000454468 SAMD9LQ8IVG5 1584 aa15.76■□□□□ 0.11
SMPD4-213ENST00000454468 PRAG1Q86YV5 1406 aa15.76■□□□□ 0.11
SMPD4-213ENST00000454468 SRPK2P78362 688 aaKnown RBP15.76■□□□□ 0.11
SMPD4-213ENST00000454468 FRAT1Q92837 279 aaPredicted RBP15.75■□□□□ 0.11
SMPD4-213ENST00000454468 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.75■□□□□ 0.111e-6■■■■□ 23.9
SMPD4-213ENST00000454468 BRD4O60885 1362 aaPredicted RBP15.75■□□□□ 0.11
SMPD4-213ENST00000454468 TTC37Q6PGP7 1564 aa15.75■□□□□ 0.11
SMPD4-213ENST00000454468 CHD1O14646 1710 aa15.75■□□□□ 0.11
SMPD4-213ENST00000454468 PPP2R1AP30153 589 aa15.74■□□□□ 0.11
SMPD4-213ENST00000454468 RGS3P49796 1198 aa15.74■□□□□ 0.11
SMPD4-213ENST00000454468 SLC12A5Q9H2X9 1139 aa15.74■□□□□ 0.11
SMPD4-213ENST00000454468 POGKQ9P215 609 aa15.74■□□□□ 0.11
SMPD4-213ENST00000454468 SHANK2Q9UPX8 1470 aa15.73■□□□□ 0.11
SMPD4-213ENST00000454468 U2SURPO15042 1029 aaKnown RBP15.72■□□□□ 0.11
SMPD4-213ENST00000454468 ERICH6BQ5W0A0 696 aa15.72■□□□□ 0.11
SMPD4-213ENST00000454468 ESF1Q9H501 851 aaKnown RBP15.72■□□□□ 0.11
SMPD4-213ENST00000454468 CRBNQ96SW2 442 aa15.72■□□□□ 0.11
SMPD4-213ENST00000454468 ARHGEF12Q9NZN5 1544 aa15.72■□□□□ 0.11
SMPD4-213ENST00000454468 DAXXQ9UER7 740 aaPredicted RBP15.72■□□□□ 0.11
SMPD4-213ENST00000454468 A2MP01023 1474 aa15.72■□□□□ 0.11
SMPD4-213ENST00000454468 ADGBQ8N7X0 1667 aa15.72■□□□□ 0.11
SMPD4-213ENST00000454468 PER1O15534 1290 aaPredicted RBP15.71■□□□□ 0.11
SMPD4-213ENST00000454468 FANCAO15360 1455 aa15.71■□□□□ 0.11
SMPD4-213ENST00000454468 ABCC2Q92887 1545 aa15.71■□□□□ 0.11
SMPD4-213ENST00000454468 BCORL1Q5H9F3 1711 aa15.7■□□□□ 0.1
SMPD4-213ENST00000454468 ADGRL1O94910 1474 aa15.7■□□□□ 0.1
SMPD4-213ENST00000454468 MSH5O43196 834 aa15.69■□□□□ 0.1
SMPD4-213ENST00000454468 PLA2R1Q13018 1463 aa15.69■□□□□ 0.1
SMPD4-213ENST00000454468 BCL2L13Q9BXK5 485 aa15.69■□□□□ 0.1
SMPD4-213ENST00000454468 ZBTB47Q9UFB7 747 aaPredicted RBP15.69■□□□□ 0.1
SMPD4-213ENST00000454468 GOLGA2Q08379 1002 aa15.68■□□□□ 0.1
SMPD4-213ENST00000454468 CABP2Q9NPB3 220 aa15.68■□□□□ 0.1
SMPD4-213ENST00000454468 SMG6Q86US8 1419 aaKnown RBP15.68■□□□□ 0.1
SMPD4-213ENST00000454468 MINK1Q8N4C8 1332 aaPredicted RBP15.68■□□□□ 0.1
SMPD4-213ENST00000454468 UHRF1BP1Q6BDS2 1440 aa15.67■□□□□ 0.1
SMPD4-213ENST00000454468 EIF3AQ14152 1382 aaKnown RBP15.67■□□□□ 0.1
SMPD4-213ENST00000454468 CENPJQ9HC77 1338 aaPredicted RBP15.66■□□□□ 0.1
SMPD4-213ENST00000454468 CFAP65Q6ZU64 1925 aaKnown RBP15.66■□□□□ 0.1
SMPD4-213ENST00000454468 U2AF1L5P0DN76 240 aaPredicted RBP15.66■□□□□ 0.1
SMPD4-213ENST00000454468 U2AF1Q01081 240 aaKnown RBP eCLIP15.66■□□□□ 0.1
SMPD4-213ENST00000454468 C20orf194Q5TEA3 1177 aa15.66■□□□□ 0.1
SMPD4-213ENST00000454468 FAM69CQ0P6D2 419 aa15.65■□□□□ 0.1
SMPD4-213ENST00000454468 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms