RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 GGT6Q6P531 493 aa18.89■□□□□ 0.61
USP40-210ENST00000454354 FGD6Q6ZV73 1430 aa18.89■□□□□ 0.61
USP40-210ENST00000454354 ZC3H13Q5T200 1668 aaKnown RBP18.89■□□□□ 0.61
USP40-210ENST00000454354 PTPRKQ15262 1439 aa18.88■□□□□ 0.61
USP40-210ENST00000454354 MROH1Q8NDA8 1641 aa18.85■□□□□ 0.61
USP40-210ENST00000454354 DUOX2Q9NRD8 1548 aa18.85■□□□□ 0.61
USP40-210ENST00000454354 KIF3BO15066 747 aa18.84■□□□□ 0.61
USP40-210ENST00000454354 CEP170BQ9Y4F5 1589 aaPredicted RBP18.84■□□□□ 0.61
USP40-210ENST00000454354 ABCC5O15440 1437 aa18.83■□□□□ 0.61
USP40-210ENST00000454354 DAPK1P53355 1430 aa18.83■□□□□ 0.61
USP40-210ENST00000454354 PZPP20742 1482 aa18.82■□□□□ 0.6
USP40-210ENST00000454354 CEP152O94986 1710 aa18.81■□□□□ 0.6
USP40-210ENST00000454354 NCOA1Q15788 1441 aa18.81■□□□□ 0.6
USP40-210ENST00000454354 CAMSAP1Q5T5Y3 1602 aa18.81■□□□□ 0.6
USP40-210ENST00000454354 ILDR1Q86SU0 546 aaPredicted RBP18.8■□□□□ 0.6
USP40-210ENST00000454354 DEPDC5O75140 1603 aa18.8■□□□□ 0.6
USP40-210ENST00000454354 ABCC3O15438 1527 aa18.79■□□□□ 0.6
USP40-210ENST00000454354 PRDM15P57071 1507 aaPredicted RBP18.79■□□□□ 0.6
USP40-210ENST00000454354 ERBINQ96RT1 1412 aa18.78■□□□□ 0.6
USP40-210ENST00000454354 PTPRTO14522 1441 aa18.77■□□□□ 0.6
USP40-210ENST00000454354 KIF15Q9NS87 1388 aa18.77■□□□□ 0.6
USP40-210ENST00000454354 PLA2R1Q13018 1463 aa18.77■□□□□ 0.59
USP40-210ENST00000454354 DMRT2Q9Y5R5 561 aa18.76■□□□□ 0.59
USP40-210ENST00000454354 A2ML1A8K2U0 1454 aa18.76■□□□□ 0.59
USP40-210ENST00000454354 WASHC2CQ9Y4E1 1318 aa18.75■□□□□ 0.59
USP40-210ENST00000454354 ADGRL2O95490 1459 aa18.75■□□□□ 0.59
USP40-210ENST00000454354 POLR1AO95602 1720 aaPredicted RBP18.74■□□□□ 0.59
USP40-210ENST00000454354 SPATA31D1Q6ZQQ2 1576 aa18.73■□□□□ 0.59
USP40-210ENST00000454354 TNRQ92752 1358 aa18.72■□□□□ 0.59
USP40-210ENST00000454354 CFAP65Q6ZU64 1925 aaKnown RBP18.72■□□□□ 0.59
USP40-210ENST00000454354 ANKRD30AQ9BXX3 1397 aa18.7■□□□□ 0.58
USP40-210ENST00000454354 NLRP1Q9C000 1473 aa18.7■□□□□ 0.58
USP40-210ENST00000454354 VWDEQ8N2E2 1590 aa18.69■□□□□ 0.58
USP40-210ENST00000454354 FBXO41Q8TF61 875 aa18.69■□□□□ 0.58
USP40-210ENST00000454354 FBXO31Q5XUX0 539 aaPredicted RBP18.68■□□□□ 0.58
USP40-210ENST00000454354 ERVK-7P63135 1459 aa18.68■□□□□ 0.58
USP40-210ENST00000454354 RRP7BPQ9NSQ0 103 aa18.67■□□□□ 0.58
USP40-210ENST00000454354 ARHGAP31Q2M1Z3 1444 aa18.66■□□□□ 0.58
USP40-210ENST00000454354 LMTK2Q8IWU2 1503 aa18.66■□□□□ 0.58
USP40-210ENST00000454354 LTBP4Q8N2S1 1624 aa18.66■□□□□ 0.58
USP40-210ENST00000454354 NEURL4Q96JN8 1562 aa18.65■□□□□ 0.58
USP40-210ENST00000454354 UGGT1Q9NYU2 1555 aa18.64■□□□□ 0.58
USP40-210ENST00000454354 UBR1Q8IWV7 1749 aa18.64■□□□□ 0.57
USP40-210ENST00000454354 PKD2Q13563 968 aa18.64■□□□□ 0.57
USP40-210ENST00000454354 CERKQ8TCT0 537 aa18.64■□□□□ 0.57
USP40-210ENST00000454354 FAM50AQ14320 339 aaKnown RBP18.63■□□□□ 0.57
USP40-210ENST00000454354 CHIC2Q9UKJ5 165 aa18.63■□□□□ 0.57
USP40-210ENST00000454354 NCKAP5LQ9HCH0 1330 aa18.61■□□□□ 0.57
USP40-210ENST00000454354 EFCAB6Q5THR3 1501 aa18.6■□□□□ 0.57
USP40-210ENST00000454354 UNC13BO14795 1591 aa18.59■□□□□ 0.57
USP40-210ENST00000454354 IQSEC2Q5JU85 1478 aa18.59■□□□□ 0.57
USP40-210ENST00000454354 KANK1Q14678 1352 aa18.59■□□□□ 0.57
USP40-210ENST00000454354 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.59■□□□□ 0.57
USP40-210ENST00000454354 KDM5AP29375 1690 aaKnown RBP18.59■□□□□ 0.57
USP40-210ENST00000454354 ANKRD50Q9ULJ7 1429 aa18.58■□□□□ 0.57
USP40-210ENST00000454354 ROCK1Q13464 1354 aa18.57■□□□□ 0.56
USP40-210ENST00000454354 TET3O43151 1660 aa18.57■□□□□ 0.56
USP40-210ENST00000454354 GCC2Q8IWJ2 1684 aa18.57■□□□□ 0.56
USP40-210ENST00000454354 MED14O60244 1454 aa18.56■□□□□ 0.56
USP40-210ENST00000454354 IQGAP1P46940 1657 aa18.56■□□□□ 0.56
USP40-210ENST00000454354 PIK3C2BO00750 1634 aa18.56■□□□□ 0.56
USP40-210ENST00000454354 THEMISQ8N1K5 641 aaPredicted RBP18.55■□□□□ 0.56
USP40-210ENST00000454354 SYNMO15061 1565 aa18.55■□□□□ 0.56
USP40-210ENST00000454354 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.53■□□□□ 0.56
USP40-210ENST00000454354 SLIT1O75093 1534 aa18.52■□□□□ 0.56
USP40-210ENST00000454354 IQGAP3Q86VI3 1631 aa18.52■□□□□ 0.55
USP40-210ENST00000454354 RPRD2Q5VT52 1461 aaKnown RBP18.52■□□□□ 0.55
USP40-210ENST00000454354 ARHGAP23Q9P227 1491 aa18.51■□□□□ 0.55
USP40-210ENST00000454354 ZNF335Q9H4Z2 1342 aaPredicted RBP18.5■□□□□ 0.55
USP40-210ENST00000454354 NOS1P29475 1434 aa18.5■□□□□ 0.55
USP40-210ENST00000454354 RRBP1Q9P2E9 1410 aaKnown RBP18.5■□□□□ 0.55
USP40-210ENST00000454354 ANKLE2Q86XL3 938 aa18.5■□□□□ 0.55
USP40-210ENST00000454354 NPHP4O75161 1426 aaPredicted RBP18.49■□□□□ 0.55
USP40-210ENST00000454354 PPARGC1BQ86YN6 1023 aaKnown RBP18.49■□□□□ 0.55
USP40-210ENST00000454354 E9PCH4 1651 aa18.48■□□□□ 0.55
USP40-210ENST00000454354 CPS1P31327 1500 aa18.47■□□□□ 0.55
USP40-210ENST00000454354 MYO5BQ9ULV0 1848 aa18.46■□□□□ 0.55
USP40-210ENST00000454354 ADGRB3O60242 1522 aa18.46■□□□□ 0.55
USP40-210ENST00000454354 SCAF11Q99590 1463 aaKnown RBP18.46■□□□□ 0.54
USP40-210ENST00000454354 STRCP1A6NGW2 1772 aa18.45■□□□□ 0.54
USP40-210ENST00000454354 TMEM2Q9UHN6 1383 aa18.4■□□□□ 0.54
USP40-210ENST00000454354 TMEM131LA2VDJ0 1609 aa18.39■□□□□ 0.53
USP40-210ENST00000454354 ITGAEP38570 1179 aa18.39■□□□□ 0.53
USP40-210ENST00000454354 IDI1Q13907 227 aa18.39■□□□□ 0.53
USP40-210ENST00000454354 SLC52A1Q9NWF4 448 aa18.38■□□□□ 0.53
USP40-210ENST00000454354 SPHKAPQ2M3C7 1700 aa18.37■□□□□ 0.53
USP40-210ENST00000454354 LTKP29376 864 aa18.37■□□□□ 0.53
USP40-210ENST00000454354 NUP155O75694 1391 aa18.35■□□□□ 0.53
USP40-210ENST00000454354 NAIPQ13075 1403 aa18.34■□□□□ 0.53
USP40-210ENST00000454354 TXNDC2Q86VQ3 553 aa18.34■□□□□ 0.53
USP40-210ENST00000454354 XIRP1Q702N8 1843 aaKnown RBP18.34■□□□□ 0.53
USP40-210ENST00000454354 STAG3Q9UJ98 1225 aa18.33■□□□□ 0.52
USP40-210ENST00000454354 EID1Q9Y6B2 187 aa18.33■□□□□ 0.52
USP40-210ENST00000454354 ZFYVE9O95405 1425 aa18.32■□□□□ 0.52
USP40-210ENST00000454354 LRRC7Q96NW7 1537 aa18.31■□□□□ 0.52
USP40-210ENST00000454354 HFM1A2PYH4 1435 aa18.31■□□□□ 0.52
USP40-210ENST00000454354 ALKQ9UM73 1620 aa18.31■□□□□ 0.52
USP40-210ENST00000454354 NWD1Q149M9 1564 aa18.29■□□□□ 0.52
USP40-210ENST00000454354 UBAP1LF5GYI3 381 aa18.28■□□□□ 0.52
USP40-210ENST00000454354 CHD2O14647 1828 aaKnown RBP18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms