RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 HECW2Q9P2P5 1572 aa13.37□□□□□ -0.27
COL28A1-205ENST00000453441 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.36□□□□□ -0.27
COL28A1-205ENST00000453441 TRAPPC8Q9Y2L5 1435 aa13.36□□□□□ -0.27
COL28A1-205ENST00000453441 ZFYVE16Q7Z3T8 1539 aa13.35□□□□□ -0.27
COL28A1-205ENST00000453441 ARHGEF40Q8TER5 1519 aa13.35□□□□□ -0.27
COL28A1-205ENST00000453441 PRKAR2AP13861 404 aaKnown RBP13.35□□□□□ -0.27
COL28A1-205ENST00000453441 ZNF644Q9H582 1327 aaPredicted RBP13.35□□□□□ -0.27
COL28A1-205ENST00000453441 RTEL1-TNFRSF6BF6WH68 1400 aa13.34□□□□□ -0.27
COL28A1-205ENST00000453441 HNRNPMP52272 730 aaKnown RBP eCLIP13.34□□□□□ -0.27
COL28A1-205ENST00000453441 AFAP1Q8N556 730 aa13.33□□□□□ -0.28
COL28A1-205ENST00000453441 SHANK2Q9UPX8 1470 aa13.33□□□□□ -0.28
COL28A1-205ENST00000453441 SPAG9O60271 1321 aaKnown RBP13.33□□□□□ -0.28
COL28A1-205ENST00000453441 INO80Q9ULG1 1556 aaPredicted RBP13.32□□□□□ -0.28
COL28A1-205ENST00000453441 MAST1Q9Y2H9 1570 aa13.32□□□□□ -0.28
COL28A1-205ENST00000453441 DNMT1P26358 1616 aaKnown RBP13.32□□□□□ -0.28
COL28A1-205ENST00000453441 RRBP1Q9P2E9 1410 aaKnown RBP13.32□□□□□ -0.28
COL28A1-205ENST00000453441 TSPY4P0CV99 314 aa13.32□□□□□ -0.28
COL28A1-205ENST00000453441 TSPY10P0CW01 314 aa13.32□□□□□ -0.28
COL28A1-205ENST00000453441 ATP7AQ04656 1500 aa13.32□□□□□ -0.28
COL28A1-205ENST00000453441 REREQ9P2R6 1566 aa13.31□□□□□ -0.28
COL28A1-205ENST00000453441 CROCC2H7BZ55 1655 aa13.31□□□□□ -0.28
COL28A1-205ENST00000453441 ATP10AO60312 1499 aa13.3□□□□□ -0.28
COL28A1-205ENST00000453441 KIDINS220Q9ULH0 1771 aa13.3□□□□□ -0.28
COL28A1-205ENST00000453441 PPARGC1BQ86YN6 1023 aaKnown RBP13.29□□□□□ -0.28
COL28A1-205ENST00000453441 MYT1LQ9UL68 1186 aa13.29□□□□□ -0.28
COL28A1-205ENST00000453441 DAPK1P53355 1430 aa13.29□□□□□ -0.28
COL28A1-205ENST00000453441 C9orf84Q5VXU9 1444 aa13.29□□□□□ -0.28
COL28A1-205ENST00000453441 DIP2CQ9Y2E4 1556 aa13.28□□□□□ -0.28
COL28A1-205ENST00000453441 FAM50AQ14320 339 aaKnown RBP13.28□□□□□ -0.28
COL28A1-205ENST00000453441 ABCC5O15440 1437 aa13.28□□□□□ -0.28
COL28A1-205ENST00000453441 YEATS2Q9ULM3 1422 aa13.28□□□□□ -0.28
COL28A1-205ENST00000453441 ABCA6Q8N139 1617 aa13.28□□□□□ -0.28
COL28A1-205ENST00000453441 ADGBQ8N7X0 1667 aa13.28□□□□□ -0.28
COL28A1-205ENST00000453441 FBXO3Q9UK99 471 aa13.27□□□□□ -0.29
COL28A1-205ENST00000453441 PLXNC1O60486 1568 aa13.27□□□□□ -0.29
COL28A1-205ENST00000453441 AGLP35573 1532 aa13.25□□□□□ -0.29
COL28A1-205ENST00000453441 CHADLQ6NUI6 762 aa13.25□□□□□ -0.29
COL28A1-205ENST00000453441 ADGRL2O95490 1459 aa13.24□□□□□ -0.29
COL28A1-205ENST00000453441 A2MP01023 1474 aa13.23□□□□□ -0.29
COL28A1-205ENST00000453441 ANKRD30AQ9BXX3 1397 aa13.23□□□□□ -0.29
COL28A1-205ENST00000453441 CREBZFQ9NS37 354 aa13.23□□□□□ -0.29
COL28A1-205ENST00000453441 ROCK1Q13464 1354 aa13.22□□□□□ -0.29
COL28A1-205ENST00000453441 DHX29Q7Z478 1369 aaKnown RBP13.21□□□□□ -0.29
COL28A1-205ENST00000453441 DUOX2Q9NRD8 1548 aa13.21□□□□□ -0.29
COL28A1-205ENST00000453441 BCORL1Q5H9F3 1711 aa13.2□□□□□ -0.3
COL28A1-205ENST00000453441 NCOA1Q15788 1441 aa13.2□□□□□ -0.3
COL28A1-205ENST00000453441 EIF2AK4Q9P2K8 1649 aaKnown RBP13.2□□□□□ -0.3
COL28A1-205ENST00000453441 ARID4BQ4LE39 1312 aaPredicted RBP13.19□□□□□ -0.3
COL28A1-205ENST00000453441 ERBINQ96RT1 1412 aa13.19□□□□□ -0.3
COL28A1-205ENST00000453441 KIF15Q9NS87 1388 aa13.19□□□□□ -0.3
COL28A1-205ENST00000453441 FAM135AQ9P2D6 1515 aa13.18□□□□□ -0.3
COL28A1-205ENST00000453441 FARP1Q9Y4F1 1045 aaPredicted RBP13.17□□□□□ -0.3
COL28A1-205ENST00000453441 PLEKHG5O94827 1062 aa13.16□□□□□ -0.3
COL28A1-205ENST00000453441 PTPRKQ15262 1439 aa13.15□□□□□ -0.3
COL28A1-205ENST00000453441 SIGLEC1Q9BZZ2 1709 aa13.15□□□□□ -0.3
COL28A1-205ENST00000453441 ADAMTSL3P82987 1691 aa13.15□□□□□ -0.31
COL28A1-205ENST00000453441 CHIC2Q9UKJ5 165 aa13.14□□□□□ -0.31
COL28A1-205ENST00000453441 CNTLNQ9NXG0 1405 aa13.13□□□□□ -0.31
COL28A1-205ENST00000453441 RNF17Q9BXT8 1623 aaKnown RBP13.13□□□□□ -0.31
COL28A1-205ENST00000453441 MIER1Q8N108 512 aa13.13□□□□□ -0.31
COL28A1-205ENST00000453441 RRP7BPQ9NSQ0 103 aa13.13□□□□□ -0.31
COL28A1-205ENST00000453441 ANKRD50Q9ULJ7 1429 aa13.13□□□□□ -0.31
COL28A1-205ENST00000453441 ITGAEP38570 1179 aa13.12□□□□□ -0.31
COL28A1-205ENST00000453441 ACIN1Q9UKV3 1341 aaKnown RBP13.12□□□□□ -0.31
COL28A1-205ENST00000453441 HAX1O00165 279 aa13.11□□□□□ -0.31
COL28A1-205ENST00000453441 KIF3BO15066 747 aa13.11□□□□□ -0.31
COL28A1-205ENST00000453441 FER1L4A9Z1Z3 1794 aa13.11□□□□□ -0.31
COL28A1-205ENST00000453441 HFM1A2PYH4 1435 aa13.11□□□□□ -0.31
COL28A1-205ENST00000453441 DEPDC5O75140 1603 aa13.1□□□□□ -0.31
COL28A1-205ENST00000453441 GCC2Q8IWJ2 1684 aa13.1□□□□□ -0.31
COL28A1-205ENST00000453441 ESF1Q9H501 851 aaKnown RBP13.1□□□□□ -0.31
COL28A1-205ENST00000453441 PRDM15P57071 1507 aaPredicted RBP13.09□□□□□ -0.31
COL28A1-205ENST00000453441 ZC3H13Q5T200 1668 aaKnown RBP13.09□□□□□ -0.31
COL28A1-205ENST00000453441 PLCD3Q8N3E9 789 aa13.09□□□□□ -0.31
COL28A1-205ENST00000453441 MADDQ8WXG6 1647 aa13.09□□□□□ -0.31
COL28A1-205ENST00000453441 MROH2AA6NES4 1674 aa13.08□□□□□ -0.31
COL28A1-205ENST00000453441 KDM5DQ9BY66 1539 aa13.08□□□□□ -0.31
COL28A1-205ENST00000453441 KANK1Q14678 1352 aa13.07□□□□□ -0.32
COL28A1-205ENST00000453441 NAIPQ13075 1403 aa13.07□□□□□ -0.32
COL28A1-205ENST00000453441 KDM4FA0A1W2PPD8 638 aa13.07□□□□□ -0.32
COL28A1-205ENST00000453441 MLECQ14165 292 aa13.07□□□□□ -0.32
COL28A1-205ENST00000453441 GGT6Q6P531 493 aa13.07□□□□□ -0.32
COL28A1-205ENST00000453441 MNX1P50219 401 aaPredicted RBP13.06□□□□□ -0.32
COL28A1-205ENST00000453441 UNC13BO14795 1591 aa13.06□□□□□ -0.32
COL28A1-205ENST00000453441 MROH1Q8NDA8 1641 aa13.06□□□□□ -0.32
COL28A1-205ENST00000453441 RIMS1Q86UR5 1692 aaKnown RBP13.05□□□□□ -0.32
COL28A1-205ENST00000453441 C19orf67A6NJJ6 358 aa13.05□□□□□ -0.32
COL28A1-205ENST00000453441 PTPRMP28827 1452 aa13.04□□□□□ -0.32
COL28A1-205ENST00000453441 ZBTB47Q9UFB7 747 aaPredicted RBP13.04□□□□□ -0.32
COL28A1-205ENST00000453441 LMTK2Q8IWU2 1503 aa13.03□□□□□ -0.32
COL28A1-205ENST00000453441 VWDEQ8N2E2 1590 aa13.03□□□□□ -0.32
COL28A1-205ENST00000453441 CLTCQ00610 1675 aaKnown RBP13.03□□□□□ -0.32
COL28A1-205ENST00000453441 WASHC2CQ9Y4E1 1318 aa13.03□□□□□ -0.32
COL28A1-205ENST00000453441 ABCC3O15438 1527 aa13.03□□□□□ -0.32
COL28A1-205ENST00000453441 VASPP50552 380 aaPredicted RBP13.02□□□□□ -0.33
COL28A1-205ENST00000453441 TRIM26Q12899 539 aaPredicted RBP13.01□□□□□ -0.33
COL28A1-205ENST00000453441 ARHGAP31Q2M1Z3 1444 aa13.01□□□□□ -0.33
COL28A1-205ENST00000453441 SETD5Q9C0A6 1442 aa13.01□□□□□ -0.33
COL28A1-205ENST00000453441 IQGAP3Q86VI3 1631 aa13□□□□□ -0.33
COL28A1-205ENST00000453441 NPATQ14207 1427 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms