RNA–Protein interactions for RNA: ENST00000451893.5

C9orf3-208, Transcript of chromosome 9 open reading frame 3, human

TSL 3

Gene C9orf3, Length 514 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
C9orf3-208	ENST00000451893	FAM135A	Q9P2D6	1515 aa		33.66	■■■□□ 2.98
C9orf3-208	ENST00000451893	PTPN23	Q9H3S7	1636 aa		33.64	■■■□□ 2.98
C9orf3-208	ENST00000451893	ZNF142	P52746	1687 aa	Predicted RBP	33.64	■■■□□ 2.98
C9orf3-208	ENST00000451893	NCOA1	Q15788	1441 aa		33.63	■■■□□ 2.97
C9orf3-208	ENST00000451893	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	33.63	■■■□□ 2.97
C9orf3-208	ENST00000451893	PTPRT	O14522	1441 aa		33.62	■■■□□ 2.97
C9orf3-208	ENST00000451893	EIF2AK4	Q9P2K8	1649 aa	Known RBP	33.57	■■■□□ 2.97
C9orf3-208	ENST00000451893	CROCC2	H7BZ55	1655 aa		33.56	■■■□□ 2.96
C9orf3-208	ENST00000451893	PZP	P20742	1482 aa		33.56	■■■□□ 2.96
C9orf3-208	ENST00000451893	TNR	Q92752	1358 aa		33.55	■■■□□ 2.96
C9orf3-208	ENST00000451893	FGD6	Q6ZV73	1430 aa		33.54	■■■□□ 2.96
C9orf3-208	ENST00000451893	DUOX2	Q9NRD8	1548 aa		33.53	■■■□□ 2.96
C9orf3-208	ENST00000451893	RNF17	Q9BXT8	1623 aa	Known RBP	33.53	■■■□□ 2.96
C9orf3-208	ENST00000451893	NCKAP5L	Q9HCH0	1330 aa		33.53	■■■□□ 2.96
C9orf3-208	ENST00000451893	ZC3H13	Q5T200	1668 aa	Known RBP	33.52	■■■□□ 2.96
C9orf3-208	ENST00000451893	A2ML1	A8K2U0	1454 aa		33.52	■■■□□ 2.96
C9orf3-208	ENST00000451893	FBXO31	Q5XUX0	539 aa	Predicted RBP	33.52	■■■□□ 2.96
C9orf3-208	ENST00000451893	SHANK2	Q9UPX8	1470 aa		33.51	■■■□□ 2.96
C9orf3-208	ENST00000451893	KIF15	Q9NS87	1388 aa		33.5	■■■□□ 2.95
C9orf3-208	ENST00000451893	PKD2	Q13563	968 aa		33.5	■■■□□ 2.95
C9orf3-208	ENST00000451893	PLA2R1	Q13018	1463 aa		33.5	■■■□□ 2.95
C9orf3-208	ENST00000451893	RRP7BP	Q9NSQ0	103 aa		33.49	■■■□□ 2.95
C9orf3-208	ENST00000451893	DNMT1	P26358	1616 aa	Known RBP	33.49	■■■□□ 2.95
C9orf3-208	ENST00000451893	ABCC5	O15440	1437 aa		33.48	■■■□□ 2.95
C9orf3-208	ENST00000451893	DAPK1	P53355	1430 aa		33.48	■■■□□ 2.95
C9orf3-208	ENST00000451893	TCOF1	Q13428	1488 aa	Known RBP	33.45	■■■□□ 2.95
C9orf3-208	ENST00000451893	ABCC3	O15438	1527 aa		33.44	■■■□□ 2.94
C9orf3-208	ENST00000451893	CEP152	O94986	1710 aa		33.44	■■■□□ 2.94
C9orf3-208	ENST00000451893	FAM50A	Q14320	339 aa	Known RBP	33.43	■■■□□ 2.94
C9orf3-208	ENST00000451893	CHIC2	Q9UKJ5	165 aa		33.43	■■■□□ 2.94
C9orf3-208	ENST00000451893	ERBIN	Q96RT1	1412 aa		33.42	■■■□□ 2.94
C9orf3-208	ENST00000451893	ANKRD30A	Q9BXX3	1397 aa		33.41	■■■□□ 2.94
C9orf3-208	ENST00000451893	CFAP65	Q6ZU64	1925 aa	Known RBP	33.4	■■■□□ 2.94
C9orf3-208	ENST00000451893	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	33.39	■■■□□ 2.94
C9orf3-208	ENST00000451893	NLRP1	Q9C000	1473 aa		33.38	■■■□□ 2.93
C9orf3-208	ENST00000451893	POLR1A	O95602	1720 aa	Predicted RBP	33.37	■■■□□ 2.93
C9orf3-208	ENST00000451893	KANK1	Q14678	1352 aa		33.36	■■■□□ 2.93
C9orf3-208	ENST00000451893	MROH1	Q8NDA8	1641 aa		33.36	■■■□□ 2.93
C9orf3-208	ENST00000451893	THEMIS	Q8N1K5	641 aa	Predicted RBP	33.35	■■■□□ 2.93
C9orf3-208	ENST00000451893	UGGT1	Q9NYU2	1555 aa		33.34	■■■□□ 2.93
C9orf3-208	ENST00000451893	PRDM15	P57071	1507 aa	Predicted RBP	33.31	■■■□□ 2.92
C9orf3-208	ENST00000451893	LTBP4	Q8N2S1	1624 aa		33.31	■■■□□ 2.92
C9orf3-208	ENST00000451893	ANKLE2	Q86XL3	938 aa		33.3	■■■□□ 2.92
C9orf3-208	ENST00000451893	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	33.3	■■■□□ 2.92
C9orf3-208	ENST00000451893	ERVK-7	P63135	1459 aa		33.3	■■■□□ 2.92
C9orf3-208	ENST00000451893	SPATA31D1	Q6ZQQ2	1576 aa		33.3	■■■□□ 2.92
C9orf3-208	ENST00000451893	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	33.29	■■■□□ 2.92
C9orf3-208	ENST00000451893	IQSEC2	Q5JU85	1478 aa		33.24	■■■□□ 2.91
C9orf3-208	ENST00000451893	DEPDC5	O75140	1603 aa		33.24	■■■□□ 2.91
C9orf3-208	ENST00000451893	ADGRL2	O95490	1459 aa		33.18	■■■□□ 2.9
C9orf3-208	ENST00000451893	NEURL4	Q96JN8	1562 aa		33.18	■■■□□ 2.9
C9orf3-208	ENST00000451893	ARHGAP31	Q2M1Z3	1444 aa		33.17	■■■□□ 2.9
C9orf3-208	ENST00000451893	STAG3	Q9UJ98	1225 aa		33.16	■■■□□ 2.9
C9orf3-208	ENST00000451893	NPHP4	O75161	1426 aa	Predicted RBP	33.15	■■■□□ 2.9
C9orf3-208	ENST00000451893	PPARGC1B	Q86YN6	1023 aa	Known RBP	33.13	■■■□□ 2.89
C9orf3-208	ENST00000451893	UBR1	Q8IWV7	1749 aa		33.12	■■■□□ 2.89
C9orf3-208	ENST00000451893	ANKRD50	Q9ULJ7	1429 aa		33.11	■■■□□ 2.89
C9orf3-208	ENST00000451893	IQGAP1	P46940	1657 aa		33.11	■■■□□ 2.89
C9orf3-208	ENST00000451893	UBAP1L	F5GYI3	381 aa		33.1	■■■□□ 2.89
C9orf3-208	ENST00000451893	LMTK2	Q8IWU2	1503 aa		33.07	■■■□□ 2.89
C9orf3-208	ENST00000451893	ITGAE	P38570	1179 aa		33.07	■■■□□ 2.88
C9orf3-208	ENST00000451893	CPS1	P31327	1500 aa		33.07	■■■□□ 2.88
C9orf3-208	ENST00000451893	MED14	O60244	1454 aa		33.06	■■■□□ 2.88
C9orf3-208	ENST00000451893	EID1	Q9Y6B2	187 aa		33.04	■■■□□ 2.88
C9orf3-208	ENST00000451893	VWDE	Q8N2E2	1590 aa		33.04	■■■□□ 2.88
C9orf3-208	ENST00000451893	PIK3C2B	O00750	1634 aa		33.03	■■■□□ 2.88
C9orf3-208	ENST00000451893	EFCAB6	Q5THR3	1501 aa		33.02	■■■□□ 2.88
C9orf3-208	ENST00000451893	SCAF11	Q99590	1463 aa	Known RBP	33.01	■■■□□ 2.88
C9orf3-208	ENST00000451893	TXNDC2	Q86VQ3	553 aa		33	■■■□□ 2.87
C9orf3-208	ENST00000451893	SCAF1	Q9H7N4	1312 aa	Known RBP	33	■■■□□ 2.87
C9orf3-208	ENST00000451893	ROCK1	Q13464	1354 aa		32.95	■■■□□ 2.86
C9orf3-208	ENST00000451893	SLIT1	O75093	1534 aa		32.94	■■■□□ 2.86
C9orf3-208	ENST00000451893	TET3	O43151	1660 aa		32.94	■■■□□ 2.86
C9orf3-208	ENST00000451893	TOM1	O60784	492 aa		32.92	■■■□□ 2.86
C9orf3-208	ENST00000451893	IDI1	Q13907	227 aa		32.92	■■■□□ 2.86
C9orf3-208	ENST00000451893	SYNM	O15061	1565 aa		32.92	■■■□□ 2.86
C9orf3-208	ENST00000451893	RPRD2	Q5VT52	1461 aa	Known RBP	32.91	■■■□□ 2.86
C9orf3-208	ENST00000451893	ARHGAP23	Q9P227	1491 aa		32.91	■■■□□ 2.86
C9orf3-208	ENST00000451893	UNC13B	O14795	1591 aa		32.91	■■■□□ 2.86
C9orf3-208	ENST00000451893	KDM5A	P29375	1690 aa	Known RBP	32.91	■■■□□ 2.86
C9orf3-208	ENST00000451893	GCC2	Q8IWJ2	1684 aa		32.91	■■■□□ 2.86
C9orf3-208	ENST00000451893	TMEM2	Q9UHN6	1383 aa		32.89	■■■□□ 2.86
C9orf3-208	ENST00000451893	LTK	P29376	864 aa		32.89	■■■□□ 2.86
C9orf3-208	ENST00000451893	PIP4K2B	P78356	416 aa		32.89	■■■□□ 2.86
C9orf3-208	ENST00000451893	SLC52A1	Q9NWF4	448 aa		32.89	■■■□□ 2.86
C9orf3-208	ENST00000451893	NOS1	P29475	1434 aa		32.88	■■■□□ 2.85
C9orf3-208	ENST00000451893	BCAN	Q96GW7	911 aa		32.86	■■■□□ 2.85
C9orf3-208	ENST00000451893	ADGRB3	O60242	1522 aa		32.86	■■■□□ 2.85
C9orf3-208	ENST00000451893	DISP3	Q9P2K9	1392 aa		32.83	■■■□□ 2.85
C9orf3-208	ENST00000451893	STRCP1	A6NGW2	1772 aa		32.81	■■■□□ 2.84
C9orf3-208	ENST00000451893	CHGA	P10645	457 aa	Known RBP	32.8	■■■□□ 2.84
C9orf3-208	ENST00000451893	NUP155	O75694	1391 aa		32.8	■■■□□ 2.84
C9orf3-208	ENST00000451893	IQGAP3	Q86VI3	1631 aa		32.79	■■■□□ 2.84
C9orf3-208	ENST00000451893	PPP1R15A	O75807	674 aa	Predicted RBP	32.77	■■■□□ 2.84
C9orf3-208	ENST00000451893		E9PCH4	1651 aa		32.76	■■■□□ 2.84
C9orf3-208	ENST00000451893	HDGF	P51858	240 aa	Known RBP	32.76	■■■□□ 2.83
C9orf3-208	ENST00000451893	LRRC7	Q96NW7	1537 aa		32.76	■■■□□ 2.83
C9orf3-208	ENST00000451893	MYO5B	Q9ULV0	1848 aa		32.75	■■■□□ 2.83
C9orf3-208	ENST00000451893	SENP3	Q9H4L4	574 aa	Predicted RBP	32.71	■■■□□ 2.83
C9orf3-208	ENST00000451893	RRBP1	Q9P2E9	1410 aa	Known RBP	32.7	■■■□□ 2.83

Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms