RNA–Protein interactions for RNA: ENST00000449954.1

LINC01961-201, Transcript of long intergenic non-protein coding RNA 1961, humanhuman

TSL 5 BASIC

Gene LINC01961, Length 745 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01961-201ENST00000449954 MYT1LQ9UL68 1186 aa13.59□□□□□ -0.23
LINC01961-201ENST00000449954 SHANK2Q9UPX8 1470 aa13.57□□□□□ -0.24
LINC01961-201ENST00000449954 AFAP1Q8N556 730 aa13.57□□□□□ -0.24
LINC01961-201ENST00000449954 SSUH2Q9Y2M2 353 aa13.57□□□□□ -0.24
LINC01961-201ENST00000449954 ZMYM3Q14202 1370 aa13.57□□□□□ -0.24
LINC01961-201ENST00000449954 ARHGAP5Q13017 1502 aa13.56□□□□□ -0.24
LINC01961-201ENST00000449954 ALKQ9UM73 1620 aa13.56□□□□□ -0.24
LINC01961-201ENST00000449954 CDK13Q14004 1512 aaKnown RBP13.55□□□□□ -0.24
LINC01961-201ENST00000449954 PITPNM1O00562 1244 aa13.55□□□□□ -0.24
LINC01961-201ENST00000449954 RGS17Q9UGC6 210 aaPredicted RBP13.55□□□□□ -0.24
LINC01961-201ENST00000449954 KIF14Q15058 1648 aa13.54□□□□□ -0.24
LINC01961-201ENST00000449954 POLR1AO95602 1720 aaPredicted RBP13.54□□□□□ -0.24
LINC01961-201ENST00000449954 RNF17Q9BXT8 1623 aaKnown RBP13.51□□□□□ -0.25
LINC01961-201ENST00000449954 NEURL4Q96JN8 1562 aa13.51□□□□□ -0.25
LINC01961-201ENST00000449954 A2ML1A8K2U0 1454 aa13.51□□□□□ -0.25
LINC01961-201ENST00000449954 KIDINS220Q9ULH0 1771 aa13.5□□□□□ -0.25
LINC01961-201ENST00000449954 ABCC1P33527 1531 aa13.5□□□□□ -0.25
LINC01961-201ENST00000449954 SRCAPQ6ZRS2 3230 aa13.5□□□□□ -0.25
LINC01961-201ENST00000449954 DNMT1P26358 1616 aaKnown RBP13.5□□□□□ -0.25
LINC01961-201ENST00000449954 VWDEQ8N2E2 1590 aa13.49□□□□□ -0.25
LINC01961-201ENST00000449954 CLTCQ00610 1675 aaKnown RBP13.49□□□□□ -0.25
LINC01961-201ENST00000449954 ITSN2Q9NZM3 1697 aa13.48□□□□□ -0.25
LINC01961-201ENST00000449954 CLEC11AQ9Y240 323 aa13.48□□□□□ -0.25
LINC01961-201ENST00000449954 SYNMO15061 1565 aa13.48□□□□□ -0.25
LINC01961-201ENST00000449954 CDK11AQ9UQ88 783 aaPredicted RBP13.47□□□□□ -0.25
LINC01961-201ENST00000449954 SPDYE1Q8NFV5 336 aaPredicted RBP13.46□□□□□ -0.25
LINC01961-201ENST00000449954 CLIP1P30622 1438 aa13.46□□□□□ -0.26
LINC01961-201ENST00000449954 SETD1AO15047 1707 aaKnown RBP13.44□□□□□ -0.26
LINC01961-201ENST00000449954 PREX2Q70Z35 1606 aa13.44□□□□□ -0.26
LINC01961-201ENST00000449954 POTEAQ6S8J7 498 aa13.44□□□□□ -0.26
LINC01961-201ENST00000449954 TROQ12816 1431 aaPredicted RBP13.44□□□□□ -0.26
LINC01961-201ENST00000449954 CDC42BPBQ9Y5S2 1711 aa13.44□□□□□ -0.26
LINC01961-201ENST00000449954 SPDYE4A6NLX3 237 aa13.43□□□□□ -0.26
LINC01961-201ENST00000449954 PLXNC1O60486 1568 aa13.43□□□□□ -0.26
LINC01961-201ENST00000449954 DEPDC5O75140 1603 aa13.42□□□□□ -0.26
LINC01961-201ENST00000449954 MED14O60244 1454 aa13.42□□□□□ -0.26
LINC01961-201ENST00000449954 LRRC7Q96NW7 1537 aa13.41□□□□□ -0.26
LINC01961-201ENST00000449954 SAMD9LQ8IVG5 1584 aa13.41□□□□□ -0.26
LINC01961-201ENST00000449954 PIP4P2Q8N4L2 257 aa13.4□□□□□ -0.26
LINC01961-201ENST00000449954 RANGAP1P46060 587 aaPredicted RBP13.39□□□□□ -0.27
LINC01961-201ENST00000449954 ANKLE2Q86XL3 938 aa13.39□□□□□ -0.27
LINC01961-201ENST00000449954 NPHP4O75161 1426 aaPredicted RBP13.39□□□□□ -0.27
LINC01961-201ENST00000449954 IQGAP1P46940 1657 aa13.38□□□□□ -0.27
LINC01961-201ENST00000449954 FMN1Q68DA7 1419 aa13.38□□□□□ -0.27
LINC01961-201ENST00000449954 A2MP01023 1474 aa13.36□□□□□ -0.27
LINC01961-201ENST00000449954 ATP7AQ04656 1500 aa13.36□□□□□ -0.27
LINC01961-201ENST00000449954 STRCP1A6NGW2 1772 aa13.35□□□□□ -0.27
LINC01961-201ENST00000449954 TNRQ92752 1358 aa13.35□□□□□ -0.27
LINC01961-201ENST00000449954 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.34□□□□□ -0.27
LINC01961-201ENST00000449954 INO80Q9ULG1 1556 aaPredicted RBP13.34□□□□□ -0.27
LINC01961-201ENST00000449954 FXR2P51116 673 aaKnown RBP eCLIP13.34□□□□□ -0.27
LINC01961-201ENST00000449954 UPF1Q92900 1129 aaKnown RBP eCLIP13.34□□□□□ -0.27
LINC01961-201ENST00000449954 SPAG9O60271 1321 aaKnown RBP13.34□□□□□ -0.27
LINC01961-201ENST00000449954 FAM135AQ9P2D6 1515 aa13.34□□□□□ -0.27
LINC01961-201ENST00000449954 FAM135BQ49AJ0 1406 aa13.33□□□□□ -0.28
LINC01961-201ENST00000449954 THEMISQ8N1K5 641 aaPredicted RBP13.33□□□□□ -0.28
LINC01961-201ENST00000449954 NLRP1Q9C000 1473 aa13.33□□□□□ -0.28
LINC01961-201ENST00000449954 UGGT1Q9NYU2 1555 aa13.32□□□□□ -0.28
LINC01961-201ENST00000449954 GGT6Q6P531 493 aa13.32□□□□□ -0.28
LINC01961-201ENST00000449954 ATP1B4Q9UN42 357 aaPredicted RBP13.32□□□□□ -0.28
LINC01961-201ENST00000449954 SYCP2Q9BX26 1530 aa13.32□□□□□ -0.28
LINC01961-201ENST00000449954 PZPP20742 1482 aa13.31□□□□□ -0.28
LINC01961-201ENST00000449954 ADGBQ8N7X0 1667 aa13.3□□□□□ -0.28
LINC01961-201ENST00000449954 CDC42BPAQ5VT25 1732 aa13.3□□□□□ -0.28
LINC01961-201ENST00000449954 PRR29P0C7W0 189 aa13.28□□□□□ -0.28
LINC01961-201ENST00000449954 KDM5DQ9BY66 1539 aa13.28□□□□□ -0.28
LINC01961-201ENST00000449954 PLEKHH2Q8IVE3 1493 aa13.27□□□□□ -0.29
LINC01961-201ENST00000449954 EEA1Q15075 1411 aa13.26□□□□□ -0.29
LINC01961-201ENST00000449954 ZC3H13Q5T200 1668 aaKnown RBP13.26□□□□□ -0.29
LINC01961-201ENST00000449954 KIAA1107Q9UPP5 1409 aa13.26□□□□□ -0.29
LINC01961-201ENST00000449954 MIA2Q96PC5 1412 aa13.25□□□□□ -0.29
LINC01961-201ENST00000449954 XIRP1Q702N8 1843 aaKnown RBP13.25□□□□□ -0.29
LINC01961-201ENST00000449954 LRRIQ1Q96JM4 1722 aa13.25□□□□□ -0.29
LINC01961-201ENST00000449954 ROBO1Q9Y6N7 1651 aa13.24□□□□□ -0.29
LINC01961-201ENST00000449954 LRRC9Q6ZRR7 1453 aa13.24□□□□□ -0.29
LINC01961-201ENST00000449954 CCDC18Q5T9S5 1454 aa13.23□□□□□ -0.29
LINC01961-201ENST00000449954 PRKAR2AP13861 404 aaKnown RBP13.23□□□□□ -0.29
LINC01961-201ENST00000449954 FBXO31Q5XUX0 539 aaPredicted RBP13.23□□□□□ -0.29
LINC01961-201ENST00000449954 ZNF772Q68DY9 489 aaPredicted RBP13.22□□□□□ -0.29
LINC01961-201ENST00000449954 CDK12Q9NYV4 1490 aaPredicted RBP13.22□□□□□ -0.29
LINC01961-201ENST00000449954 JCADQ9P266 1359 aa13.21□□□□□ -0.29
LINC01961-201ENST00000449954 ZNF777Q9ULD5 760 aaPredicted RBP13.21□□□□□ -0.29
LINC01961-201ENST00000449954 HNRNPMP52272 730 aaKnown RBP eCLIP13.2□□□□□ -0.3
LINC01961-201ENST00000449954 SCAF11Q99590 1463 aaKnown RBP13.19□□□□□ -0.3
LINC01961-201ENST00000449954 ARHGAP35Q9NRY4 1499 aa13.19□□□□□ -0.3
LINC01961-201ENST00000449954 TRIM52Q96A61 297 aa13.19□□□□□ -0.3
LINC01961-201ENST00000449954 STAG3Q9UJ98 1225 aa13.18□□□□□ -0.3
LINC01961-201ENST00000449954 PHLPP1O60346 1717 aa13.18□□□□□ -0.3
LINC01961-201ENST00000449954 GPATCH8Q9UKJ3 1502 aaKnown RBP13.18□□□□□ -0.3
LINC01961-201ENST00000449954 DHX29Q7Z478 1369 aaKnown RBP13.17□□□□□ -0.3
LINC01961-201ENST00000449954 SPATA31A6Q5VVP1 1343 aa13.16□□□□□ -0.3
LINC01961-201ENST00000449954 RTEL1-TNFRSF6BF6WH68 1400 aa13.16□□□□□ -0.3
LINC01961-201ENST00000449954 CHADLQ6NUI6 762 aa13.16□□□□□ -0.3
LINC01961-201ENST00000449954 WASHC2CQ9Y4E1 1318 aa13.15□□□□□ -0.3
LINC01961-201ENST00000449954 FGD6Q6ZV73 1430 aa13.14□□□□□ -0.31
LINC01961-201ENST00000449954 MAP3K1Q13233 1512 aa13.14□□□□□ -0.31
LINC01961-201ENST00000449954 LRP6O75581 1613 aa13.14□□□□□ -0.31
LINC01961-201ENST00000449954 RXRBP28702 533 aa13.14□□□□□ -0.31
LINC01961-201ENST00000449954 TMEM94Q12767 1356 aa13.14□□□□□ -0.31
LINC01961-201ENST00000449954 HAX1O00165 279 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms