RNA–Protein interactions for RNA: ENST00000449744.1

CHD3-205, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 880 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-205ENST00000449744 FGD6Q6ZV73 1430 aa23.75■■□□□ 1.39
CHD3-205ENST00000449744 MYO3AQ8NEV4 1616 aa23.71■■□□□ 1.39
CHD3-205ENST00000449744 ABCC5O15440 1437 aa23.71■■□□□ 1.39
CHD3-205ENST00000449744 TCOF1Q13428 1488 aaKnown RBP23.7■■□□□ 1.38
CHD3-205ENST00000449744 SHANK2Q9UPX8 1470 aa23.7■■□□□ 1.38
CHD3-205ENST00000449744 DUOX2Q9NRD8 1548 aa23.69■■□□□ 1.38
CHD3-205ENST00000449744 CROCC2H7BZ55 1655 aa23.69■■□□□ 1.38
CHD3-205ENST00000449744 CAMSAP1Q5T5Y3 1602 aa23.69■■□□□ 1.38
CHD3-205ENST00000449744 EIF2AK4Q9P2K8 1649 aaKnown RBP23.69■■□□□ 1.38
CHD3-205ENST00000449744 DAPK1P53355 1430 aa23.68■■□□□ 1.38
CHD3-205ENST00000449744 NCOA1Q15788 1441 aa23.68■■□□□ 1.38
CHD3-205ENST00000449744 PTPRTO14522 1441 aa23.67■■□□□ 1.38
CHD3-205ENST00000449744 KIF15Q9NS87 1388 aa23.67■■□□□ 1.38
CHD3-205ENST00000449744 DNMT1P26358 1616 aaKnown RBP23.67■■□□□ 1.38
CHD3-205ENST00000449744 RNF17Q9BXT8 1623 aaKnown RBP23.67■■□□□ 1.38
CHD3-205ENST00000449744 CEP170BQ9Y4F5 1589 aaPredicted RBP23.67■■□□□ 1.38
CHD3-205ENST00000449744 FBXO31Q5XUX0 539 aaPredicted RBP23.67■■□□□ 1.38
CHD3-205ENST00000449744 RRP7BPQ9NSQ0 103 aa23.67■■□□□ 1.38
CHD3-205ENST00000449744 PZPP20742 1482 aa23.67■■□□□ 1.38
CHD3-205ENST00000449744 ZNF142P52746 1687 aaPredicted RBP23.67■■□□□ 1.38
CHD3-205ENST00000449744 TNRQ92752 1358 aa23.65■■□□□ 1.38
CHD3-205ENST00000449744 FAM50AQ14320 339 aaKnown RBP23.63■■□□□ 1.37
CHD3-205ENST00000449744 A2ML1A8K2U0 1454 aa23.62■■□□□ 1.37
CHD3-205ENST00000449744 CHIC2Q9UKJ5 165 aa23.62■■□□□ 1.37
CHD3-205ENST00000449744 ZC3H13Q5T200 1668 aaKnown RBP23.62■■□□□ 1.37
CHD3-205ENST00000449744 ANKRD30AQ9BXX3 1397 aa23.62■■□□□ 1.37
CHD3-205ENST00000449744 NCKAP5LQ9HCH0 1330 aa23.61■■□□□ 1.37
CHD3-205ENST00000449744 ERBINQ96RT1 1412 aa23.61■■□□□ 1.37
CHD3-205ENST00000449744 ABCC3O15438 1527 aa23.61■■□□□ 1.37
CHD3-205ENST00000449744 PLA2R1Q13018 1463 aa23.61■■□□□ 1.37
CHD3-205ENST00000449744 PKD2Q13563 968 aa23.59■■□□□ 1.37
CHD3-205ENST00000449744 MROH1Q8NDA8 1641 aa23.58■■□□□ 1.36
CHD3-205ENST00000449744 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.55■■□□□ 1.36
CHD3-205ENST00000449744 NLRP1Q9C000 1473 aa23.55■■□□□ 1.36
CHD3-205ENST00000449744 CEP152O94986 1710 aa23.54■■□□□ 1.36
CHD3-205ENST00000449744 PRDM15P57071 1507 aaPredicted RBP23.53■■□□□ 1.36
CHD3-205ENST00000449744 KANK1Q14678 1352 aa23.52■■□□□ 1.36
CHD3-205ENST00000449744 THEMISQ8N1K5 641 aaPredicted RBP23.51■■□□□ 1.35
CHD3-205ENST00000449744 ERVK-7P63135 1459 aa23.5■■□□□ 1.35
CHD3-205ENST00000449744 SPATA31D1Q6ZQQ2 1576 aa23.5■■□□□ 1.35
CHD3-205ENST00000449744 ADGRL2O95490 1459 aa23.49■■□□□ 1.35
CHD3-205ENST00000449744 UGGT1Q9NYU2 1555 aa23.49■■□□□ 1.35
CHD3-205ENST00000449744 DEPDC5O75140 1603 aa23.48■■□□□ 1.35
CHD3-205ENST00000449744 PPARGC1BQ86YN6 1023 aaKnown RBP23.47■■□□□ 1.35
CHD3-205ENST00000449744 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.47■■□□□ 1.35
CHD3-205ENST00000449744 ARHGAP31Q2M1Z3 1444 aa23.46■■□□□ 1.35
CHD3-205ENST00000449744 ANKLE2Q86XL3 938 aa23.46■■□□□ 1.35
CHD3-205ENST00000449744 LTBP4Q8N2S1 1624 aa23.45■■□□□ 1.34
CHD3-205ENST00000449744 CFAP65Q6ZU64 1925 aaKnown RBP23.45■■□□□ 1.34
CHD3-205ENST00000449744 POLR1AO95602 1720 aaPredicted RBP23.44■■□□□ 1.34
CHD3-205ENST00000449744 ZNF335Q9H4Z2 1342 aaPredicted RBP23.43■■□□□ 1.34
CHD3-205ENST00000449744 ANKRD50Q9ULJ7 1429 aa23.42■■□□□ 1.34
CHD3-205ENST00000449744 LMTK2Q8IWU2 1503 aa23.39■■□□□ 1.34
CHD3-205ENST00000449744 VWDEQ8N2E2 1590 aa23.38■■□□□ 1.33
CHD3-205ENST00000449744 NEURL4Q96JN8 1562 aa23.38■■□□□ 1.33
CHD3-205ENST00000449744 IQSEC2Q5JU85 1478 aa23.37■■□□□ 1.33
CHD3-205ENST00000449744 ITGAEP38570 1179 aa23.37■■□□□ 1.33
CHD3-205ENST00000449744 NPHP4O75161 1426 aaPredicted RBP23.35■■□□□ 1.33
CHD3-205ENST00000449744 ROCK1Q13464 1354 aa23.35■■□□□ 1.33
CHD3-205ENST00000449744 STAG3Q9UJ98 1225 aa23.34■■□□□ 1.33
CHD3-205ENST00000449744 DISP3Q9P2K9 1392 aa23.34■■□□□ 1.33
CHD3-205ENST00000449744 UBR1Q8IWV7 1749 aa23.33■■□□□ 1.33
CHD3-205ENST00000449744 MED14O60244 1454 aa23.33■■□□□ 1.33
CHD3-205ENST00000449744 EFCAB6Q5THR3 1501 aa23.32■■□□□ 1.32
CHD3-205ENST00000449744 IQGAP1P46940 1657 aa23.28■■□□□ 1.32
CHD3-205ENST00000449744 EID1Q9Y6B2 187 aa23.28■■□□□ 1.32
CHD3-205ENST00000449744 PIK3C2BO00750 1634 aa23.28■■□□□ 1.32
CHD3-205ENST00000449744 IDI1Q13907 227 aa23.27■■□□□ 1.32
CHD3-205ENST00000449744 TXNDC2Q86VQ3 553 aa23.27■■□□□ 1.32
CHD3-205ENST00000449744 NOS1P29475 1434 aa23.26■■□□□ 1.31
CHD3-205ENST00000449744 SCAF11Q99590 1463 aaKnown RBP23.26■■□□□ 1.31
CHD3-205ENST00000449744 CPS1P31327 1500 aa23.26■■□□□ 1.31
CHD3-205ENST00000449744 UNC13BO14795 1591 aa23.26■■□□□ 1.31
CHD3-205ENST00000449744 RPRD2Q5VT52 1461 aaKnown RBP23.25■■□□□ 1.31
CHD3-205ENST00000449744 SLIT1O75093 1534 aa23.25■■□□□ 1.31
CHD3-205ENST00000449744 UBAP1LF5GYI3 381 aa23.25■■□□□ 1.31
CHD3-205ENST00000449744 SYNMO15061 1565 aa23.25■■□□□ 1.31
CHD3-205ENST00000449744 TET3O43151 1660 aa23.25■■□□□ 1.31
CHD3-205ENST00000449744 ARHGAP23Q9P227 1491 aa23.24■■□□□ 1.31
CHD3-205ENST00000449744 SLC52A1Q9NWF4 448 aa23.24■■□□□ 1.31
CHD3-205ENST00000449744 LTKP29376 864 aa23.23■■□□□ 1.31
CHD3-205ENST00000449744 TMEM2Q9UHN6 1383 aa23.22■■□□□ 1.31
CHD3-205ENST00000449744 RRBP1Q9P2E9 1410 aaKnown RBP23.22■■□□□ 1.31
CHD3-205ENST00000449744 KDM5AP29375 1690 aaKnown RBP23.21■■□□□ 1.31
CHD3-205ENST00000449744 GCC2Q8IWJ2 1684 aa23.21■■□□□ 1.31
CHD3-205ENST00000449744 NUP155O75694 1391 aa23.19■■□□□ 1.3
CHD3-205ENST00000449744 ILDR2Q71H61 639 aa23.19■■□□□ 1.3
CHD3-205ENST00000449744 ADGRB3O60242 1522 aa23.18■■□□□ 1.3
CHD3-205ENST00000449744 IQGAP3Q86VI3 1631 aa23.17■■□□□ 1.3
CHD3-205ENST00000449744 E9PCH4 1651 aa23.13■■□□□ 1.29
CHD3-205ENST00000449744 TOM1O60784 492 aa23.13■■□□□ 1.29
CHD3-205ENST00000449744 SCAF1Q9H7N4 1312 aaKnown RBP23.12■■□□□ 1.29
CHD3-205ENST00000449744 CHGAP10645 457 aaKnown RBP23.12■■□□□ 1.29
CHD3-205ENST00000449744 BCANQ96GW7 911 aa23.11■■□□□ 1.29
CHD3-205ENST00000449744 HDGFP51858 240 aaKnown RBP23.1■■□□□ 1.29
CHD3-205ENST00000449744 STRCP1A6NGW2 1772 aa23.09■■□□□ 1.29
CHD3-205ENST00000449744 SOCS7O14512 581 aa23.08■■□□□ 1.29
CHD3-205ENST00000449744 PIP4K2BP78356 416 aa23.08■■□□□ 1.29
CHD3-205ENST00000449744 LRRC7Q96NW7 1537 aa23.08■■□□□ 1.28
CHD3-205ENST00000449744 PPP1R15AO75807 674 aaPredicted RBP23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms