RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 PKD2Q13563 968 aa11.12□□□□□ -0.63
VPS41-208ENST00000448833 ZNF142P52746 1687 aaPredicted RBP11.11□□□□□ -0.63
VPS41-208ENST00000448833 MIA2Q96PC5 1412 aa11.11□□□□□ -0.63
VPS41-208ENST00000448833 WASHC2CQ9Y4E1 1318 aa11.1□□□□□ -0.63
VPS41-208ENST00000448833 NCOA1Q15788 1441 aa11.1□□□□□ -0.63
VPS41-208ENST00000448833 CAMSAP1Q5T5Y3 1602 aa11.1□□□□□ -0.63
VPS41-208ENST00000448833 PTPRKQ15262 1439 aa11.09□□□□□ -0.63
VPS41-208ENST00000448833 MYO3AQ8NEV4 1616 aa11.09□□□□□ -0.63
VPS41-208ENST00000448833 PLA2R1Q13018 1463 aa11.09□□□□□ -0.63
VPS41-208ENST00000448833 MAST1Q9Y2H9 1570 aa11.08□□□□□ -0.64
VPS41-208ENST00000448833 CEP170BQ9Y4F5 1589 aaPredicted RBP11.08□□□□□ -0.64
VPS41-208ENST00000448833 IQSEC2Q5JU85 1478 aa11.08□□□□□ -0.64
VPS41-208ENST00000448833 KDM5DQ9BY66 1539 aa11.08□□□□□ -0.64
VPS41-208ENST00000448833 MYOM3Q5VTT5 1437 aa11.08□□□□□ -0.64
VPS41-208ENST00000448833 EIF2AK4Q9P2K8 1649 aaKnown RBP11.06□□□□□ -0.64
VPS41-208ENST00000448833 ZC3H13Q5T200 1668 aaKnown RBP11.06□□□□□ -0.64
VPS41-208ENST00000448833 A2ML1A8K2U0 1454 aa11.06□□□□□ -0.64
VPS41-208ENST00000448833 PZPP20742 1482 aa11.06□□□□□ -0.64
VPS41-208ENST00000448833 KANK4Q5T7N3 995 aaPredicted RBP11.05□□□□□ -0.64
VPS41-208ENST00000448833 THEMISQ8N1K5 641 aaPredicted RBP11.05□□□□□ -0.64
VPS41-208ENST00000448833 TNRQ92752 1358 aa11.04□□□□□ -0.64
VPS41-208ENST00000448833 DNMT1P26358 1616 aaKnown RBP11.04□□□□□ -0.64
VPS41-208ENST00000448833 RNF17Q9BXT8 1623 aaKnown RBP11.04□□□□□ -0.64
VPS41-208ENST00000448833 NCKAP5LQ9HCH0 1330 aa11.04□□□□□ -0.64
VPS41-208ENST00000448833 POLR1AO95602 1720 aaPredicted RBP11.04□□□□□ -0.64
VPS41-208ENST00000448833 TCOF1Q13428 1488 aaKnown RBP11.03□□□□□ -0.64
VPS41-208ENST00000448833 NLRP1Q9C000 1473 aa11.03□□□□□ -0.64
VPS41-208ENST00000448833 DUOX2Q9NRD8 1548 aa11.03□□□□□ -0.64
VPS41-208ENST00000448833 LTBP4Q8N2S1 1624 aa11.02□□□□□ -0.64
VPS41-208ENST00000448833 ANKLE2Q86XL3 938 aa11.02□□□□□ -0.65
VPS41-208ENST00000448833 CFAP65Q6ZU64 1925 aaKnown RBP11.01□□□□□ -0.65
VPS41-208ENST00000448833 FBXO31Q5XUX0 539 aaPredicted RBP11.01□□□□□ -0.65
VPS41-208ENST00000448833 PTPN23Q9H3S7 1636 aa11.01□□□□□ -0.65
VPS41-208ENST00000448833 SHANK2Q9UPX8 1470 aa11□□□□□ -0.65
VPS41-208ENST00000448833 CROCC2H7BZ55 1655 aa11□□□□□ -0.65
VPS41-208ENST00000448833 UGGT1Q9NYU2 1555 aa10.99□□□□□ -0.65
VPS41-208ENST00000448833 CACNB1Q02641 598 aaPredicted RBP10.98□□□□□ -0.65
VPS41-208ENST00000448833 KANK1Q14678 1352 aa10.98□□□□□ -0.65
VPS41-208ENST00000448833 ERBINQ96RT1 1412 aa10.98□□□□□ -0.65
VPS41-208ENST00000448833 ABCC3O15438 1527 aa10.98□□□□□ -0.65
VPS41-208ENST00000448833 DEPDC5O75140 1603 aa10.98□□□□□ -0.65
VPS41-208ENST00000448833 ZNF335Q9H4Z2 1342 aaPredicted RBP10.97□□□□□ -0.65
VPS41-208ENST00000448833 ANKRD30AQ9BXX3 1397 aa10.97□□□□□ -0.65
VPS41-208ENST00000448833 KIF15Q9NS87 1388 aa10.97□□□□□ -0.65
VPS41-208ENST00000448833 SPATA31D1Q6ZQQ2 1576 aa10.97□□□□□ -0.65
VPS41-208ENST00000448833 CEP152O94986 1710 aa10.97□□□□□ -0.65
VPS41-208ENST00000448833 ABCC5O15440 1437 aa10.96□□□□□ -0.65
VPS41-208ENST00000448833 FGD6Q6ZV73 1430 aa10.96□□□□□ -0.65
VPS41-208ENST00000448833 RRP7BPQ9NSQ0 103 aa10.96□□□□□ -0.65
VPS41-208ENST00000448833 CPS1P31327 1500 aa10.95□□□□□ -0.66
VPS41-208ENST00000448833 DAPK1P53355 1430 aa10.95□□□□□ -0.66
VPS41-208ENST00000448833 ARHGAP31Q2M1Z3 1444 aa10.95□□□□□ -0.66
VPS41-208ENST00000448833 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.95□□□□□ -0.66
VPS41-208ENST00000448833 UBAP1LF5GYI3 381 aa10.95□□□□□ -0.66
VPS41-208ENST00000448833 MED14O60244 1454 aa10.94□□□□□ -0.66
VPS41-208ENST00000448833 TOM1O60784 492 aa10.94□□□□□ -0.66
VPS41-208ENST00000448833 MROH1Q8NDA8 1641 aa10.94□□□□□ -0.66
VPS41-208ENST00000448833 PRDM15P57071 1507 aaPredicted RBP10.94□□□□□ -0.66
VPS41-208ENST00000448833 ERVK-7P63135 1459 aa10.93□□□□□ -0.66
VPS41-208ENST00000448833 NEURL4Q96JN8 1562 aa10.93□□□□□ -0.66
VPS41-208ENST00000448833 NPHP4O75161 1426 aaPredicted RBP10.92□□□□□ -0.66
VPS41-208ENST00000448833 UBR1Q8IWV7 1749 aa10.92□□□□□ -0.66
VPS41-208ENST00000448833 IQGAP1P46940 1657 aa10.92□□□□□ -0.66
VPS41-208ENST00000448833 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.92□□□□□ -0.666e-7■■□□□ 12.6
VPS41-208ENST00000448833 EID1Q9Y6B2 187 aa10.92□□□□□ -0.66
VPS41-208ENST00000448833 KDM5AP29375 1690 aaKnown RBP10.92□□□□□ -0.66
VPS41-208ENST00000448833 KCNA4P22459 653 aa10.9□□□□□ -0.66
VPS41-208ENST00000448833 FAM50AQ14320 339 aaKnown RBP10.9□□□□□ -0.66
VPS41-208ENST00000448833 PPP4R3CPQ6ZMV5 832 aa10.9□□□□□ -0.66
VPS41-208ENST00000448833 STAG3Q9UJ98 1225 aa10.9□□□□□ -0.66
VPS41-208ENST00000448833 CHIC2Q9UKJ5 165 aa10.9□□□□□ -0.66
VPS41-208ENST00000448833 DISP3Q9P2K9 1392 aa10.89□□□□□ -0.67
VPS41-208ENST00000448833 LMTK2Q8IWU2 1503 aa10.89□□□□□ -0.67
VPS41-208ENST00000448833 ADGRL2O95490 1459 aa10.88□□□□□ -0.67
VPS41-208ENST00000448833 TXNDC2Q86VQ3 553 aa10.88□□□□□ -0.67
VPS41-208ENST00000448833 SLIT1O75093 1534 aa10.88□□□□□ -0.67
VPS41-208ENST00000448833 SCAF11Q99590 1463 aaKnown RBP10.87□□□□□ -0.67
VPS41-208ENST00000448833 VWDEQ8N2E2 1590 aa10.87□□□□□ -0.67
VPS41-208ENST00000448833 HDGFP51858 240 aaKnown RBP10.87□□□□□ -0.67
VPS41-208ENST00000448833 SLC52A1Q9NWF4 448 aa10.87□□□□□ -0.67
VPS41-208ENST00000448833 RPRD2Q5VT52 1461 aaKnown RBP10.86□□□□□ -0.67
VPS41-208ENST00000448833 ARHGAP23Q9P227 1491 aa10.86□□□□□ -0.67
VPS41-208ENST00000448833 SYNMO15061 1565 aa10.86□□□□□ -0.67
VPS41-208ENST00000448833 SCAF1Q9H7N4 1312 aaKnown RBP10.85□□□□□ -0.67
VPS41-208ENST00000448833 ANKRD50Q9ULJ7 1429 aa10.85□□□□□ -0.67
VPS41-208ENST00000448833 PIK3C2BO00750 1634 aa10.85□□□□□ -0.67
VPS41-208ENST00000448833 TMEM2Q9UHN6 1383 aa10.84□□□□□ -0.67
VPS41-208ENST00000448833 EFCAB6Q5THR3 1501 aa10.84□□□□□ -0.67
VPS41-208ENST00000448833 ROCK1Q13464 1354 aa10.83□□□□□ -0.68
VPS41-208ENST00000448833 PIP4K2BP78356 416 aa10.83□□□□□ -0.68
VPS41-208ENST00000448833 IDI1Q13907 227 aa10.83□□□□□ -0.68
VPS41-208ENST00000448833 TET3O43151 1660 aa10.82□□□□□ -0.68
VPS41-208ENST00000448833 GCC2Q8IWJ2 1684 aa10.82□□□□□ -0.68
VPS41-208ENST00000448833 LTKP29376 864 aa10.82□□□□□ -0.68
VPS41-208ENST00000448833 STRCP1A6NGW2 1772 aa10.82□□□□□ -0.68
VPS41-208ENST00000448833 NOS1P29475 1434 aa10.82□□□□□ -0.68
VPS41-208ENST00000448833 LRRC7Q96NW7 1537 aa10.81□□□□□ -0.68
VPS41-208ENST00000448833 ADGRB3O60242 1522 aa10.79□□□□□ -0.68
VPS41-208ENST00000448833 UNC13BO14795 1591 aa10.79□□□□□ -0.68
VPS41-208ENST00000448833 HSPA1LP34931 641 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 106.9 ms