RNA–Protein interactions for RNA: ENST00000448310.1

CBX4-202, Transcript of chromobox 4, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene CBX4, Length 718 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-202ENST00000448310 KDM5DQ9BY66 1539 aa44.73■■■■■ 4.75
CBX4-202ENST00000448310 PLA2R1Q13018 1463 aa44.68■■■■■ 4.74
CBX4-202ENST00000448310 MYOM3Q5VTT5 1437 aa44.67■■■■■ 4.74
CBX4-202ENST00000448310 MAST1Q9Y2H9 1570 aa44.67■■■■■ 4.74
CBX4-202ENST00000448310 FBXO31Q5XUX0 539 aaPredicted RBP44.66■■■■■ 4.74
CBX4-202ENST00000448310 FAM135AQ9P2D6 1515 aa44.65■■■■■ 4.74
CBX4-202ENST00000448310 A2ML1A8K2U0 1454 aa44.65■■■■■ 4.74
CBX4-202ENST00000448310 WASHC2CQ9Y4E1 1318 aa44.64■■■■■ 4.74
CBX4-202ENST00000448310 DNMT1P26358 1616 aaKnown RBP44.63■■■■■ 4.73
CBX4-202ENST00000448310 PZPP20742 1482 aa44.62■■■■■ 4.73
CBX4-202ENST00000448310 TCOF1Q13428 1488 aaKnown RBP44.62■■■■■ 4.73
CBX4-202ENST00000448310 MIA2Q96PC5 1412 aa44.62■■■■■ 4.73
CBX4-202ENST00000448310 PKD2Q13563 968 aa44.6■■■■■ 4.73
CBX4-202ENST00000448310 TNRQ92752 1358 aa44.59■■■■■ 4.73
CBX4-202ENST00000448310 RNF17Q9BXT8 1623 aaKnown RBP44.56■■■■■ 4.72
CBX4-202ENST00000448310 ZNF335Q9H4Z2 1342 aaPredicted RBP44.53■■■■■ 4.72
CBX4-202ENST00000448310 EIF2AK4Q9P2K8 1649 aaKnown RBP44.5■■■■■ 4.71
CBX4-202ENST00000448310 APLP2Q06481 763 aa44.48■■■■■ 4.71
CBX4-202ENST00000448310 IQSEC2Q5JU85 1478 aa44.47■■■■■ 4.71
CBX4-202ENST00000448310 POLR1AO95602 1720 aaPredicted RBP44.46■■■■■ 4.71
CBX4-202ENST00000448310 ABCC3O15438 1527 aa44.45■■■■■ 4.71
CBX4-202ENST00000448310 ZC3H13Q5T200 1668 aaKnown RBP44.45■■■■■ 4.71
CBX4-202ENST00000448310 MROH1Q8NDA8 1641 aa44.43■■■■■ 4.7
CBX4-202ENST00000448310 PTPN23Q9H3S7 1636 aa44.43■■■■■ 4.7
CBX4-202ENST00000448310 CROCC2H7BZ55 1655 aa44.42■■■■■ 4.7
CBX4-202ENST00000448310 CEP152O94986 1710 aa44.39■■■■■ 4.7
CBX4-202ENST00000448310 DUOX2Q9NRD8 1548 aa44.39■■■■■ 4.7
CBX4-202ENST00000448310 NEURL4Q96JN8 1562 aa44.39■■■■■ 4.7
CBX4-202ENST00000448310 NLRP1Q9C000 1473 aa44.37■■■■■ 4.69
CBX4-202ENST00000448310 ABCC5O15440 1437 aa44.36■■■■■ 4.69
CBX4-202ENST00000448310 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP44.34■■■■■ 4.691e-8■■■■□ 26.5
CBX4-202ENST00000448310 UGGT1Q9NYU2 1555 aa44.34■■■■■ 4.69
CBX4-202ENST00000448310 CFAP65Q6ZU64 1925 aaKnown RBP44.34■■■■■ 4.69
CBX4-202ENST00000448310 SHANK2Q9UPX8 1470 aa44.33■■■■■ 4.69
CBX4-202ENST00000448310 KIF15Q9NS87 1388 aa44.31■■■■■ 4.68
CBX4-202ENST00000448310 SPATA31D1Q6ZQQ2 1576 aa44.31■■■■■ 4.68
CBX4-202ENST00000448310 FGD6Q6ZV73 1430 aa44.29■■■■■ 4.68
CBX4-202ENST00000448310 THEMISQ8N1K5 641 aaPredicted RBP44.28■■■■■ 4.68
CBX4-202ENST00000448310 DAPK1P53355 1430 aa44.27■■■■■ 4.68
CBX4-202ENST00000448310 RRP7BPQ9NSQ0 103 aa44.27■■■■■ 4.68
CBX4-202ENST00000448310 ERVK-7P63135 1459 aa44.27■■■■■ 4.68
CBX4-202ENST00000448310 ANKLE2Q86XL3 938 aa44.24■■■■■ 4.67
CBX4-202ENST00000448310 ERBINQ96RT1 1412 aa44.21■■■■■ 4.67
CBX4-202ENST00000448310 PRDM15P57071 1507 aaPredicted RBP44.2■■■■■ 4.67
CBX4-202ENST00000448310 UBAP1LF5GYI3 381 aa44.2■■■■■ 4.67
CBX4-202ENST00000448310 DEPDC5O75140 1603 aa44.17■■■■■ 4.66
CBX4-202ENST00000448310 NPHP4O75161 1426 aaPredicted RBP44.15■■■■■ 4.66
CBX4-202ENST00000448310 CHIC2Q9UKJ5 165 aa44.14■■■■■ 4.66
CBX4-202ENST00000448310 GRWD1Q9BQ67 446 aaKnown RBP eCLIP44.12■■■■■ 4.659e-7■■□□□ 13
CBX4-202ENST00000448310 MED14O60244 1454 aa44.12■■■■■ 4.65
CBX4-202ENST00000448310 DISP3Q9P2K9 1392 aa44.11■■■■■ 4.65
CBX4-202ENST00000448310 UBR1Q8IWV7 1749 aa44.1■■■■■ 4.65
CBX4-202ENST00000448310 IQGAP1P46940 1657 aa44.1■■■■■ 4.65
CBX4-202ENST00000448310 VWDEQ8N2E2 1590 aa44.1■■■■■ 4.65
CBX4-202ENST00000448310 CPS1P31327 1500 aa44.09■■■■■ 4.65
CBX4-202ENST00000448310 ANKRD30AQ9BXX3 1397 aa44.06■■■■■ 4.64
CBX4-202ENST00000448310 ARHGAP31Q2M1Z3 1444 aa44.06■■■■■ 4.64
CBX4-202ENST00000448310 KANK1Q14678 1352 aa43.99■■■■■ 4.63
CBX4-202ENST00000448310 FAM50AQ14320 339 aaKnown RBP43.96■■■■■ 4.63
CBX4-202ENST00000448310 STRCP1A6NGW2 1772 aa43.95■■■■■ 4.63
CBX4-202ENST00000448310 PIK3C2BO00750 1634 aa43.92■■■■■ 4.62
CBX4-202ENST00000448310 ADGRL2O95490 1459 aa43.91■■■■■ 4.62
CBX4-202ENST00000448310 SCAF11Q99590 1463 aaKnown RBP43.9■■■■■ 4.62
CBX4-202ENST00000448310 LMTK2Q8IWU2 1503 aa43.9■■■■■ 4.62
CBX4-202ENST00000448310 SCAF1Q9H7N4 1312 aaKnown RBP43.9■■■■■ 4.62
CBX4-202ENST00000448310 ILDR2Q71H61 639 aa43.89■■■■■ 4.62
CBX4-202ENST00000448310 ARHGAP23Q9P227 1491 aa43.88■■■■■ 4.61
CBX4-202ENST00000448310 SLIT1O75093 1534 aa43.88■■■■■ 4.61
CBX4-202ENST00000448310 PIP4K2BP78356 416 aa43.87■■■■■ 4.61
CBX4-202ENST00000448310 LTKP29376 864 aa43.85■■■■■ 4.61
CBX4-202ENST00000448310 TOM1O60784 492 aa43.84■■■■■ 4.61
CBX4-202ENST00000448310 TXNDC2Q86VQ3 553 aa43.83■■■■■ 4.61
CBX4-202ENST00000448310 EFCAB6Q5THR3 1501 aa43.8■■■■■ 4.6
CBX4-202ENST00000448310 SYNMO15061 1565 aa43.8■■■■■ 4.6
CBX4-202ENST00000448310 LRRC7Q96NW7 1537 aa43.78■■■■■ 4.6
CBX4-202ENST00000448310 STAG3Q9UJ98 1225 aa43.76■■■■■ 4.6
CBX4-202ENST00000448310 ALKQ9UM73 1620 aa43.76■■■■■ 4.6
CBX4-202ENST00000448310 ANKRD50Q9ULJ7 1429 aa43.75■■■■■ 4.59
CBX4-202ENST00000448310 IDI1Q13907 227 aa43.75■■■■■ 4.59
CBX4-202ENST00000448310 HSPA1LP34931 641 aa43.74■■■■■ 4.59
CBX4-202ENST00000448310 KDM5AP29375 1690 aaKnown RBP43.73■■■■■ 4.59
CBX4-202ENST00000448310 TMEM2Q9UHN6 1383 aa43.73■■■■■ 4.59
CBX4-202ENST00000448310 EID1Q9Y6B2 187 aa43.73■■■■■ 4.59
CBX4-202ENST00000448310 NOS1P29475 1434 aa43.71■■■■■ 4.59
CBX4-202ENST00000448310 ADGRB3O60242 1522 aa43.63■■■■■ 4.57
CBX4-202ENST00000448310 TET3O43151 1660 aa43.61■■■■■ 4.57
CBX4-202ENST00000448310 XIRP1Q702N8 1843 aaKnown RBP43.59■■■■■ 4.57
CBX4-202ENST00000448310 UNC13BO14795 1591 aa43.58■■■■■ 4.57
CBX4-202ENST00000448310 RPRD2Q5VT52 1461 aaKnown RBP43.57■■■■■ 4.57
CBX4-202ENST00000448310 GCC2Q8IWJ2 1684 aa43.55■■■■■ 4.56
CBX4-202ENST00000448310 MYO5BQ9ULV0 1848 aa43.55■■■■■ 4.56
CBX4-202ENST00000448310 PPARGC1BQ86YN6 1023 aaKnown RBP43.54■■■■■ 4.56
CBX4-202ENST00000448310 SLC52A1Q9NWF4 448 aa43.54■■■■■ 4.56
CBX4-202ENST00000448310 SOCS7O14512 581 aa43.52■■■■■ 4.56
CBX4-202ENST00000448310 SENP3Q9H4L4 574 aaPredicted RBP43.51■■■■■ 4.56
CBX4-202ENST00000448310 ROCK1Q13464 1354 aa43.49■■■■■ 4.55
CBX4-202ENST00000448310 MED1Q15648 1581 aaPredicted RBP43.49■■■■■ 4.55
CBX4-202ENST00000448310 SLC26A8Q96RN1 970 aa43.48■■■■■ 4.55
CBX4-202ENST00000448310 ITGAEP38570 1179 aa43.46■■■■■ 4.55
CBX4-202ENST00000448310 E9PCH4 1651 aa43.45■■■■■ 4.55
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms