RNA–Protein interactions for RNA: ENST00000447540.5

CHD9-203, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 5 BASIC

Gene CHD9, Length 11,509 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-203ENST00000447540 NUTM1Q86Y26 1132 aa3.62□□□□□ -1.83
CHD9-203ENST00000447540 ZMYM3Q14202 1370 aa3.62□□□□□ -1.83
CHD9-203ENST00000447540 OFD1O75665 1012 aa3.62□□□□□ -1.83
CHD9-203ENST00000447540 VPS8Q8N3P4 1428 aa3.62□□□□□ -1.83
CHD9-203ENST00000447540 HMGXB3Q12766 1538 aa3.62□□□□□ -1.83
CHD9-203ENST00000447540 HSP90AB3PQ58FF7 597 aa3.62□□□□□ -1.83
CHD9-203ENST00000447540 GEMIN8Q9NWZ8 242 aaKnown RBP3.62□□□□□ -1.83
CHD9-203ENST00000447540 FAM13BQ9NYF5 915 aa3.62□□□□□ -1.83
CHD9-203ENST00000447540 SLKQ9H2G2 1235 aaPredicted RBP3.62□□□□□ -1.83
CHD9-203ENST00000447540 ZNF771Q7L3S4 317 aaPredicted RBP3.62□□□□□ -1.83
CHD9-203ENST00000447540 CCDC39Q9UFE4 941 aa3.62□□□□□ -1.83
CHD9-203ENST00000447540 TUBB4AP04350 444 aa3.61□□□□□ -1.83
CHD9-203ENST00000447540 RABEP1Q15276 862 aa3.61□□□□□ -1.83
CHD9-203ENST00000447540 SASS6Q6UVJ0 657 aa3.61□□□□□ -1.83
CHD9-203ENST00000447540 V9GYY5 206 aaPredicted RBP3.61□□□□□ -1.83
CHD9-203ENST00000447540 PPP4R3BQ5MIZ7 849 aa3.61□□□□□ -1.83
CHD9-203ENST00000447540 SMG6Q86US8 1419 aaKnown RBP3.61□□□□□ -1.83
CHD9-203ENST00000447540 KIF2AO00139 706 aaPredicted RBP3.61□□□□□ -1.83
CHD9-203ENST00000447540 KIF1CO43896 1103 aaKnown RBP3.61□□□□□ -1.83
CHD9-203ENST00000447540 CCNB3Q8WWL7 1395 aa3.61□□□□□ -1.83
CHD9-203ENST00000447540 LIG1P18858 919 aa3.61□□□□□ -1.83
CHD9-203ENST00000447540 DMTNQ08495 405 aa3.61□□□□□ -1.83
CHD9-203ENST00000447540 HSCBQ8IWL3 235 aa3.61□□□□□ -1.83
CHD9-203ENST00000447540 GTF3C5Q9Y5Q8 519 aaPredicted RBP3.61□□□□□ -1.83
CHD9-203ENST00000447540 PATL2C9JE40 543 aaKnown RBP3.61□□□□□ -1.83
CHD9-203ENST00000447540 NUCB2P80303 420 aa3.61□□□□□ -1.83
CHD9-203ENST00000447540 HDAC5Q9UQL6 1122 aa3.61□□□□□ -1.83
CHD9-203ENST00000447540 MBD3O95983 291 aa3.61□□□□□ -1.83
CHD9-203ENST00000447540 TAOK2Q9UL54 1235 aa3.6□□□□□ -1.83
CHD9-203ENST00000447540 TICAM2Q86XR7 235 aa3.6□□□□□ -1.83
CHD9-203ENST00000447540 TMX4Q9H1E5 349 aaPredicted RBP3.6□□□□□ -1.83
CHD9-203ENST00000447540 ARGLU1Q9NWB6 273 aaPredicted RBP3.6□□□□□ -1.83
CHD9-203ENST00000447540 KIF16BQ96L93 1317 aa3.6□□□□□ -1.83
CHD9-203ENST00000447540 FHAD1B1AJZ9 1412 aa3.6□□□□□ -1.83
CHD9-203ENST00000447540 SCAPERQ9BY12 1400 aa3.6□□□□□ -1.83
CHD9-203ENST00000447540 AEBP2Q6ZN18 517 aaPredicted RBP3.6□□□□□ -1.83
CHD9-203ENST00000447540 SARNPP82979 210 aaKnown RBP3.6□□□□□ -1.83
CHD9-203ENST00000447540 TMC1Q8TDI8 760 aa3.6□□□□□ -1.83
CHD9-203ENST00000447540 IBTKQ9P2D0 1353 aaPredicted RBP3.6□□□□□ -1.83
CHD9-203ENST00000447540 MYCBPQ99417 103 aaPredicted RBP3.6□□□□□ -1.83
CHD9-203ENST00000447540 KIF21AQ7Z4S6 1674 aa3.6□□□□□ -1.83
CHD9-203ENST00000447540 TPM4P67936 248 aa3.6□□□□□ -1.83
CHD9-203ENST00000447540 ZRSR1Q15695 479 aaKnown RBP3.59□□□□□ -1.83
CHD9-203ENST00000447540 CCDC91Q7Z6B0 441 aa3.59□□□□□ -1.83
CHD9-203ENST00000447540 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.59□□□□□ -1.839e-7■■□□□ 12.9
CHD9-203ENST00000447540 PAK3O75914 559 aaPredicted RBP3.59□□□□□ -1.83
CHD9-203ENST00000447540 NASPP49321 788 aaPredicted RBP3.59□□□□□ -1.83
CHD9-203ENST00000447540 NBPF20Q3BBV1 942 aa3.59□□□□□ -1.83
CHD9-203ENST00000447540 GRPEL1Q9HAV7 217 aa3.59□□□□□ -1.83
CHD9-203ENST00000447540 DHX29Q7Z478 1369 aaKnown RBP3.59□□□□□ -1.83
CHD9-203ENST00000447540 TRDNQ13061 729 aa3.59□□□□□ -1.84
CHD9-203ENST00000447540 CHMP4AQ9BY43 222 aa3.59□□□□□ -1.84
CHD9-203ENST00000447540 DHX57Q6P158 1386 aaKnown RBP3.59□□□□□ -1.84
CHD9-203ENST00000447540 TUBB4BP68371 445 aa3.59□□□□□ -1.84
CHD9-203ENST00000447540 AK7Q96M32 723 aa3.59□□□□□ -1.84
CHD9-203ENST00000447540 HIRIP3Q9BW71 556 aaPredicted RBP3.59□□□□□ -1.84
CHD9-203ENST00000447540 TPM1P09493 284 aa3.58□□□□□ -1.84
CHD9-203ENST00000447540 ATAD2Q6PL18 1390 aa3.58□□□□□ -1.84
CHD9-203ENST00000447540 ZNF526Q8TF50 670 aaPredicted RBP3.58□□□□□ -1.84
CHD9-203ENST00000447540 CGNL1Q0VF96 1302 aa3.58□□□□□ -1.84
CHD9-203ENST00000447540 ANKRD30AQ9BXX3 1397 aa3.58□□□□□ -1.84
CHD9-203ENST00000447540 IVLP07476 585 aa3.58□□□□□ -1.84
CHD9-203ENST00000447540 MCM4P33991 863 aa3.58□□□□□ -1.84
CHD9-203ENST00000447540 SYCP1Q15431 976 aa3.58□□□□□ -1.84
CHD9-203ENST00000447540 BSDC1Q9NW68 430 aaPredicted RBP3.58□□□□□ -1.84
CHD9-203ENST00000447540 INSRP06213 1382 aa3.58□□□□□ -1.84
CHD9-203ENST00000447540 LMOD3Q0VAK6 560 aa3.58□□□□□ -1.84
CHD9-203ENST00000447540 SLC26A8Q96RN1 970 aa3.58□□□□□ -1.84
CHD9-203ENST00000447540 TUBBP07437 444 aa3.57□□□□□ -1.84
CHD9-203ENST00000447540 ACBD3Q9H3P7 528 aa3.57□□□□□ -1.84
CHD9-203ENST00000447540 TERF2IPQ9NYB0 399 aa3.57□□□□□ -1.84
CHD9-203ENST00000447540 RCAN3Q9UKA8 241 aa3.57□□□□□ -1.84
CHD9-203ENST00000447540 MRVI1Q9Y6F6 885 aa3.57□□□□□ -1.84
CHD9-203ENST00000447540 SH3BGRP55822 239 aaPredicted RBP3.57□□□□□ -1.84
CHD9-203ENST00000447540 PLEKHH2Q8IVE3 1493 aa3.57□□□□□ -1.84
CHD9-203ENST00000447540 A6NNZ2 444 aa3.57□□□□□ -1.84
CHD9-203ENST00000447540 TUBB8Q3ZCM7 444 aa3.57□□□□□ -1.84
CHD9-203ENST00000447540 TRAK2O60296 914 aa3.57□□□□□ -1.84
CHD9-203ENST00000447540 RGS3P49796 1198 aa3.57□□□□□ -1.84
CHD9-203ENST00000447540 CCP110O43303 1012 aa3.57□□□□□ -1.84
CHD9-203ENST00000447540 EIF3JO75822 258 aaKnown RBP3.57□□□□□ -1.84
CHD9-203ENST00000447540 OGFRQ9NZT2 677 aa3.57□□□□□ -1.84
CHD9-203ENST00000447540 TTC36A6NLP5 189 aa3.57□□□□□ -1.84
CHD9-203ENST00000447540 ZNF500O60304 480 aaPredicted RBP3.57□□□□□ -1.84
CHD9-203ENST00000447540 STAC3Q96MF2 364 aa3.57□□□□□ -1.84
CHD9-203ENST00000447540 CGNQ9P2M7 1197 aaKnown RBP3.57□□□□□ -1.84
CHD9-203ENST00000447540 RNF123Q5XPI4 1314 aa3.57□□□□□ -1.84
CHD9-203ENST00000447540 CAVIN2O95810 425 aa3.57□□□□□ -1.84
CHD9-203ENST00000447540 ERCC3P19447 782 aa3.57□□□□□ -1.84
CHD9-203ENST00000447540 TXLNBQ8N3L3 684 aa3.57□□□□□ -1.84
CHD9-203ENST00000447540 CHRM1P11229 460 aaPredicted RBP3.57□□□□□ -1.84
CHD9-203ENST00000447540 RDXP35241 583 aaKnown RBP3.57□□□□□ -1.84
CHD9-203ENST00000447540 KIF3CO14782 793 aa3.56□□□□□ -1.84
CHD9-203ENST00000447540 PPP1R15AO75807 674 aaPredicted RBP3.56□□□□□ -1.84
CHD9-203ENST00000447540 GRIPAP1Q4V328 841 aa3.56□□□□□ -1.84
CHD9-203ENST00000447540 PLPPR3Q6T4P5 718 aa3.56□□□□□ -1.84
CHD9-203ENST00000447540 KRT222Q8N1A0 295 aa3.56□□□□□ -1.84
CHD9-203ENST00000447540 RASSF4Q9H2L5 321 aa3.56□□□□□ -1.84
CHD9-203ENST00000447540 UTP3Q9NQZ2 479 aaKnown RBP eCLIP3.56□□□□□ -1.846e-7■■■■■ 88.2
CHD9-203ENST00000447540 BMS1Q14692 1282 aaKnown RBP3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms