RNA–Protein interactions for RNA: ENST00000444440.1

SF3A1-203, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 777 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-203ENST00000444440 FGD6Q6ZV73 1430 aa17.11■□□□□ 0.33
SF3A1-203ENST00000444440 ABCC5O15440 1437 aa17.1■□□□□ 0.33
SF3A1-203ENST00000444440 KIF3BO15066 747 aa17.09■□□□□ 0.33
SF3A1-203ENST00000444440 CEP170BQ9Y4F5 1589 aaPredicted RBP17.09■□□□□ 0.33
SF3A1-203ENST00000444440 ZC3H13Q5T200 1668 aaKnown RBP17.09■□□□□ 0.33
SF3A1-203ENST00000444440 CAMSAP1Q5T5Y3 1602 aa17.08■□□□□ 0.32
SF3A1-203ENST00000444440 SHANK2Q9UPX8 1470 aa17.08■□□□□ 0.32
SF3A1-203ENST00000444440 APLP2Q06481 763 aa17.08■□□□□ 0.32
SF3A1-203ENST00000444440 FAM135AQ9P2D6 1515 aa17.07■□□□□ 0.32
SF3A1-203ENST00000444440 DAPK1P53355 1430 aa17.07■□□□□ 0.32
SF3A1-203ENST00000444440 TSPY4P0CV99 314 aa17.07■□□□□ 0.32
SF3A1-203ENST00000444440 TSPY10P0CW01 314 aa17.07■□□□□ 0.32
SF3A1-203ENST00000444440 DUOX2Q9NRD8 1548 aa17.06■□□□□ 0.32
SF3A1-203ENST00000444440 DEPDC5O75140 1603 aa17.05■□□□□ 0.32
SF3A1-203ENST00000444440 ABCC3O15438 1527 aa17.05■□□□□ 0.32
SF3A1-203ENST00000444440 NCOA1Q15788 1441 aa17.04■□□□□ 0.32
SF3A1-203ENST00000444440 PPP6R1Q9UPN7 881 aa17.04■□□□□ 0.32
SF3A1-203ENST00000444440 PZPP20742 1482 aa17.04■□□□□ 0.32
SF3A1-203ENST00000444440 POLR1AO95602 1720 aaPredicted RBP17.03■□□□□ 0.32
SF3A1-203ENST00000444440 PRDM15P57071 1507 aaPredicted RBP17.01■□□□□ 0.31
SF3A1-203ENST00000444440 FBXO31Q5XUX0 539 aaPredicted RBP17■□□□□ 0.31
SF3A1-203ENST00000444440 KIF15Q9NS87 1388 aa17■□□□□ 0.31
SF3A1-203ENST00000444440 A2ML1A8K2U0 1454 aa16.99■□□□□ 0.31
SF3A1-203ENST00000444440 SPATA31D1Q6ZQQ2 1576 aa16.98■□□□□ 0.31
SF3A1-203ENST00000444440 WASHC2CQ9Y4E1 1318 aa16.97■□□□□ 0.31
SF3A1-203ENST00000444440 PTPRTO14522 1441 aa16.97■□□□□ 0.31
SF3A1-203ENST00000444440 ERBINQ96RT1 1412 aa16.97■□□□□ 0.31
SF3A1-203ENST00000444440 RRP7BPQ9NSQ0 103 aa16.96■□□□□ 0.31
SF3A1-203ENST00000444440 TNRQ92752 1358 aa16.96■□□□□ 0.31
SF3A1-203ENST00000444440 ADGRL2O95490 1459 aa16.96■□□□□ 0.31
SF3A1-203ENST00000444440 PLA2R1Q13018 1463 aa16.96■□□□□ 0.31
SF3A1-203ENST00000444440 NEURL4Q96JN8 1562 aa16.96■□□□□ 0.31
SF3A1-203ENST00000444440 LTBP4Q8N2S1 1624 aa16.96■□□□□ 0.3
SF3A1-203ENST00000444440 CHIC2Q9UKJ5 165 aa16.95■□□□□ 0.3
SF3A1-203ENST00000444440 NCKAP5LQ9HCH0 1330 aa16.95■□□□□ 0.3
SF3A1-203ENST00000444440 UBR1Q8IWV7 1749 aa16.94■□□□□ 0.3
SF3A1-203ENST00000444440 FBXO41Q8TF61 875 aa16.94■□□□□ 0.3
SF3A1-203ENST00000444440 VWDEQ8N2E2 1590 aa16.94■□□□□ 0.3
SF3A1-203ENST00000444440 ERVK-7P63135 1459 aa16.93■□□□□ 0.3
SF3A1-203ENST00000444440 PPARGC1BQ86YN6 1023 aaKnown RBP16.92■□□□□ 0.3
SF3A1-203ENST00000444440 FAM50AQ14320 339 aaKnown RBP16.91■□□□□ 0.3
SF3A1-203ENST00000444440 CERKQ8TCT0 537 aa16.91■□□□□ 0.3
SF3A1-203ENST00000444440 UGGT1Q9NYU2 1555 aa16.9■□□□□ 0.3
SF3A1-203ENST00000444440 DMRT2Q9Y5R5 561 aa16.9■□□□□ 0.3
SF3A1-203ENST00000444440 NLRP1Q9C000 1473 aa16.9■□□□□ 0.3
SF3A1-203ENST00000444440 ANKRD30AQ9BXX3 1397 aa16.89■□□□□ 0.3
SF3A1-203ENST00000444440 MYO5BQ9ULV0 1848 aa16.88■□□□□ 0.29
SF3A1-203ENST00000444440 PIK3C2BO00750 1634 aa16.88■□□□□ 0.29
SF3A1-203ENST00000444440 LMTK2Q8IWU2 1503 aa16.87■□□□□ 0.29
SF3A1-203ENST00000444440 UNC13BO14795 1591 aa16.86■□□□□ 0.29
SF3A1-203ENST00000444440 SYNMO15061 1565 aa16.86■□□□□ 0.29
SF3A1-203ENST00000444440 STRCP1A6NGW2 1772 aa16.86■□□□□ 0.29
SF3A1-203ENST00000444440 ARHGAP31Q2M1Z3 1444 aa16.86■□□□□ 0.29
SF3A1-203ENST00000444440 EFCAB6Q5THR3 1501 aa16.86■□□□□ 0.29
SF3A1-203ENST00000444440 IQGAP1P46940 1657 aa16.85■□□□□ 0.29
SF3A1-203ENST00000444440 GCC2Q8IWJ2 1684 aa16.85■□□□□ 0.29
SF3A1-203ENST00000444440 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.85■□□□□ 0.295e-10■■□□□ 12
SF3A1-203ENST00000444440 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.85■□□□□ 0.29
SF3A1-203ENST00000444440 TET3O43151 1660 aa16.84■□□□□ 0.29
SF3A1-203ENST00000444440 PKD2Q13563 968 aa16.83■□□□□ 0.28
SF3A1-203ENST00000444440 ZNF335Q9H4Z2 1342 aaPredicted RBP16.83■□□□□ 0.28
SF3A1-203ENST00000444440 ANKRD50Q9ULJ7 1429 aa16.82■□□□□ 0.28
SF3A1-203ENST00000444440 E9PCH4 1651 aa16.81■□□□□ 0.28
SF3A1-203ENST00000444440 KDM5AP29375 1690 aaKnown RBP16.81■□□□□ 0.28
SF3A1-203ENST00000444440 MED14O60244 1454 aa16.8■□□□□ 0.28
SF3A1-203ENST00000444440 IQGAP3Q86VI3 1631 aa16.79■□□□□ 0.28
SF3A1-203ENST00000444440 KANK1Q14678 1352 aa16.78■□□□□ 0.28
SF3A1-203ENST00000444440 SLIT1O75093 1534 aa16.77■□□□□ 0.28
SF3A1-203ENST00000444440 IQSEC2Q5JU85 1478 aa16.77■□□□□ 0.28
SF3A1-203ENST00000444440 ARHGAP23Q9P227 1491 aa16.77■□□□□ 0.28
SF3A1-203ENST00000444440 NOS1P29475 1434 aa16.77■□□□□ 0.27
SF3A1-203ENST00000444440 ROCK1Q13464 1354 aa16.77■□□□□ 0.27
SF3A1-203ENST00000444440 THEMISQ8N1K5 641 aaPredicted RBP16.76■□□□□ 0.27
SF3A1-203ENST00000444440 NPHP4O75161 1426 aaPredicted RBP16.76■□□□□ 0.27
SF3A1-203ENST00000444440 RRBP1Q9P2E9 1410 aaKnown RBP16.75■□□□□ 0.27
SF3A1-203ENST00000444440 XIRP1Q702N8 1843 aaKnown RBP16.75■□□□□ 0.27
SF3A1-203ENST00000444440 ITGAEP38570 1179 aa16.74■□□□□ 0.27
SF3A1-203ENST00000444440 ANKLE2Q86XL3 938 aa16.73■□□□□ 0.27
SF3A1-203ENST00000444440 ADGRB3O60242 1522 aa16.73■□□□□ 0.27
SF3A1-203ENST00000444440 SCAF11Q99590 1463 aaKnown RBP16.72■□□□□ 0.27
SF3A1-203ENST00000444440 RPRD2Q5VT52 1461 aaKnown RBP16.71■□□□□ 0.27
SF3A1-203ENST00000444440 TMEM131LA2VDJ0 1609 aa16.7■□□□□ 0.26
SF3A1-203ENST00000444440 LTKP29376 864 aa16.7■□□□□ 0.26
SF3A1-203ENST00000444440 SPHKAPQ2M3C7 1700 aa16.7■□□□□ 0.26
SF3A1-203ENST00000444440 IDI1Q13907 227 aa16.69■□□□□ 0.26
SF3A1-203ENST00000444440 CPS1P31327 1500 aa16.69■□□□□ 0.26
SF3A1-203ENST00000444440 ALKQ9UM73 1620 aa16.68■□□□□ 0.26
SF3A1-203ENST00000444440 TMEM2Q9UHN6 1383 aa16.66■□□□□ 0.26
SF3A1-203ENST00000444440 NAIPQ13075 1403 aa16.63■□□□□ 0.25
SF3A1-203ENST00000444440 TXNDC2Q86VQ3 553 aa16.63■□□□□ 0.25
SF3A1-203ENST00000444440 LRRC7Q96NW7 1537 aa16.62■□□□□ 0.25
SF3A1-203ENST00000444440 NUP155O75694 1391 aa16.62■□□□□ 0.25
SF3A1-203ENST00000444440 ZFYVE9O95405 1425 aa16.62■□□□□ 0.25
SF3A1-203ENST00000444440 CHD2O14647 1828 aaKnown RBP16.61■□□□□ 0.25
SF3A1-203ENST00000444440 UBAP1LF5GYI3 381 aa16.59■□□□□ 0.25
SF3A1-203ENST00000444440 STAG3Q9UJ98 1225 aa16.59■□□□□ 0.25
SF3A1-203ENST00000444440 CLTCL1P53675 1640 aa16.59■□□□□ 0.25
SF3A1-203ENST00000444440 SLC52A1Q9NWF4 448 aa16.58■□□□□ 0.24
SF3A1-203ENST00000444440 NWD1Q149M9 1564 aa16.57■□□□□ 0.24
SF3A1-203ENST00000444440 KIF1BO60333 1816 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms