RNA–Protein interactions for RNA: ENST00000442560.5

RFX3-206, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-206ENST00000442560 GGT6Q6P531 493 aa11.44□□□□□ -0.58
RFX3-206ENST00000442560 KIDINS220Q9ULH0 1771 aa11.44□□□□□ -0.58
RFX3-206ENST00000442560 ZMYM3Q14202 1370 aa11.43□□□□□ -0.58
RFX3-206ENST00000442560 ZNF644Q9H582 1327 aaPredicted RBP11.43□□□□□ -0.58
RFX3-206ENST00000442560 CDC42BPAQ5VT25 1732 aa11.43□□□□□ -0.58
RFX3-206ENST00000442560 KIAA1107Q9UPP5 1409 aa11.43□□□□□ -0.58
RFX3-206ENST00000442560 ZBTB22O15209 634 aa11.42□□□□□ -0.58
RFX3-206ENST00000442560 PTPRTO14522 1441 aa11.42□□□□□ -0.58
RFX3-206ENST00000442560 C3P01024 1663 aa11.41□□□□□ -0.58
RFX3-206ENST00000442560 A2MP01023 1474 aa11.41□□□□□ -0.58
RFX3-206ENST00000442560 PLEKHH2Q8IVE3 1493 aa11.41□□□□□ -0.58
RFX3-206ENST00000442560 STRCQ7RTU9 1775 aa11.4□□□□□ -0.58
RFX3-206ENST00000442560 ATP7AQ04656 1500 aa11.4□□□□□ -0.59
RFX3-206ENST00000442560 NCKAP5LQ9HCH0 1330 aa11.39□□□□□ -0.59
RFX3-206ENST00000442560 NPATQ14207 1427 aa11.38□□□□□ -0.59
RFX3-206ENST00000442560 NCOA1Q15788 1441 aa11.38□□□□□ -0.59
RFX3-206ENST00000442560 CEP162Q5TB80 1403 aa11.37□□□□□ -0.59
RFX3-206ENST00000442560 MBD5Q9P267 1494 aa11.37□□□□□ -0.59
RFX3-206ENST00000442560 INO80Q9ULG1 1556 aaPredicted RBP11.36□□□□□ -0.59
RFX3-206ENST00000442560 PTPRKQ15262 1439 aa11.35□□□□□ -0.59
RFX3-206ENST00000442560 EHBP1L1Q8N3D4 1523 aa11.35□□□□□ -0.59
RFX3-206ENST00000442560 SUPT6HQ7KZ85 1726 aaKnown RBP11.35□□□□□ -0.59
RFX3-206ENST00000442560 DHX29Q7Z478 1369 aaKnown RBP11.35□□□□□ -0.59
RFX3-206ENST00000442560 TIAM1Q13009 1591 aa11.35□□□□□ -0.59
RFX3-206ENST00000442560 SETD1BQ9UPS6 1966 aaKnown RBP11.35□□□□□ -0.59
RFX3-206ENST00000442560 CAMSAP1Q5T5Y3 1602 aa11.35□□□□□ -0.59
RFX3-206ENST00000442560 PLXNC1O60486 1568 aa11.34□□□□□ -0.59
RFX3-206ENST00000442560 KIF3BO15066 747 aa11.34□□□□□ -0.59
RFX3-206ENST00000442560 RTEL1-TNFRSF6BF6WH68 1400 aa11.34□□□□□ -0.59
RFX3-206ENST00000442560 LTBP4Q8N2S1 1624 aa11.33□□□□□ -0.6
RFX3-206ENST00000442560 ZNF335Q9H4Z2 1342 aaPredicted RBP11.33□□□□□ -0.6
RFX3-206ENST00000442560 DISP3Q9P2K9 1392 aa11.32□□□□□ -0.6
RFX3-206ENST00000442560 LOC105371045A0A1W2PR82 267 aa11.32□□□□□ -0.6
RFX3-206ENST00000442560 PKD2Q13563 968 aa11.32□□□□□ -0.6
RFX3-206ENST00000442560 RSPH4AQ5TD94 716 aa11.32□□□□□ -0.6
RFX3-206ENST00000442560 FBXO31Q5XUX0 539 aaPredicted RBP11.32□□□□□ -0.6
RFX3-206ENST00000442560 CLEC11AQ9Y240 323 aa11.32□□□□□ -0.6
RFX3-206ENST00000442560 MROH2AA6NES4 1674 aa11.32□□□□□ -0.6
RFX3-206ENST00000442560 CLTCQ00610 1675 aaKnown RBP11.32□□□□□ -0.6
RFX3-206ENST00000442560 NCOA2Q15596 1464 aa11.32□□□□□ -0.6
RFX3-206ENST00000442560 TSPY4P0CV99 314 aa11.3□□□□□ -0.6
RFX3-206ENST00000442560 TSPY10P0CW01 314 aa11.3□□□□□ -0.6
RFX3-206ENST00000442560 CCDC141Q6ZP82 1450 aa11.3□□□□□ -0.6
RFX3-206ENST00000442560 WASHC2CQ9Y4E1 1318 aa11.3□□□□□ -0.6
RFX3-206ENST00000442560 ILDR2Q71H61 639 aa11.29□□□□□ -0.6
RFX3-206ENST00000442560 CAMSAP2Q08AD1 1489 aa11.29□□□□□ -0.6
RFX3-206ENST00000442560 PLA2R1Q13018 1463 aa11.29□□□□□ -0.6
RFX3-206ENST00000442560 TNRQ92752 1358 aa11.28□□□□□ -0.6
RFX3-206ENST00000442560 CEP170BQ9Y4F5 1589 aaPredicted RBP11.28□□□□□ -0.6
RFX3-206ENST00000442560 UBAP1LF5GYI3 381 aa11.28□□□□□ -0.6
RFX3-206ENST00000442560 MYO3AQ8NEV4 1616 aa11.27□□□□□ -0.6
RFX3-206ENST00000442560 A2ML1A8K2U0 1454 aa11.27□□□□□ -0.6
RFX3-206ENST00000442560 TCOF1Q13428 1488 aaKnown RBP11.27□□□□□ -0.6
RFX3-206ENST00000442560 IQSEC2Q5JU85 1478 aa11.27□□□□□ -0.6
RFX3-206ENST00000442560 PRKAR2AP13861 404 aaKnown RBP11.27□□□□□ -0.61
RFX3-206ENST00000442560 KANK4Q5T7N3 995 aaPredicted RBP11.27□□□□□ -0.61
RFX3-206ENST00000442560 ADGBQ8N7X0 1667 aa11.27□□□□□ -0.61
RFX3-206ENST00000442560 VPS8Q8N3P4 1428 aa11.26□□□□□ -0.61
RFX3-206ENST00000442560 LRRC9Q6ZRR7 1453 aa11.25□□□□□ -0.61
RFX3-206ENST00000442560 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.24□□□□□ -0.61
RFX3-206ENST00000442560 MIA2Q96PC5 1412 aa11.24□□□□□ -0.61
RFX3-206ENST00000442560 PZPP20742 1482 aa11.24□□□□□ -0.61
RFX3-206ENST00000442560 ZNF142P52746 1687 aaPredicted RBP11.24□□□□□ -0.61
RFX3-206ENST00000442560 ANKLE2Q86XL3 938 aa11.23□□□□□ -0.61
RFX3-206ENST00000442560 THEMISQ8N1K5 641 aaPredicted RBP11.23□□□□□ -0.61
RFX3-206ENST00000442560 KDM5DQ9BY66 1539 aa11.23□□□□□ -0.61
RFX3-206ENST00000442560 DNMT1P26358 1616 aaKnown RBP11.23□□□□□ -0.61
RFX3-206ENST00000442560 SPDYE2BA6NHP3 402 aa11.22□□□□□ -0.61
RFX3-206ENST00000442560 SPDYE6P0CI01 402 aa11.22□□□□□ -0.61
RFX3-206ENST00000442560 SPDYE2Q495Y8 402 aa11.22□□□□□ -0.61
RFX3-206ENST00000442560 ARHGEF5Q12774 1597 aa11.21□□□□□ -0.61
RFX3-206ENST00000442560 SOCS7O14512 581 aa11.2□□□□□ -0.62
RFX3-206ENST00000442560 PIP4K2BP78356 416 aa11.2□□□□□ -0.62
RFX3-206ENST00000442560 FAM135AQ9P2D6 1515 aa11.19□□□□□ -0.62
RFX3-206ENST00000442560 NLRP1Q9C000 1473 aa11.19□□□□□ -0.62
RFX3-206ENST00000442560 MYOM3Q5VTT5 1437 aa11.18□□□□□ -0.62
RFX3-206ENST00000442560 TOM1O60784 492 aa11.18□□□□□ -0.62
RFX3-206ENST00000442560 SPATA31D1Q6ZQQ2 1576 aa11.18□□□□□ -0.62
RFX3-206ENST00000442560 UGGT1Q9NYU2 1555 aa11.18□□□□□ -0.62
RFX3-206ENST00000442560 SHANK2Q9UPX8 1470 aa11.18□□□□□ -0.62
RFX3-206ENST00000442560 NPHP4O75161 1426 aaPredicted RBP11.18□□□□□ -0.62
RFX3-206ENST00000442560 NEURL4Q96JN8 1562 aa11.17□□□□□ -0.62
RFX3-206ENST00000442560 MKRN4PQ13434 485 aaPredicted RBP11.17□□□□□ -0.62
RFX3-206ENST00000442560 RRP7BPQ9NSQ0 103 aa11.17□□□□□ -0.62
RFX3-206ENST00000442560 ABCC3O15438 1527 aa11.16□□□□□ -0.62
RFX3-206ENST00000442560 MAP3K1Q13233 1512 aa11.16□□□□□ -0.62
RFX3-206ENST00000442560 HSPA1LP34931 641 aa11.16□□□□□ -0.62
RFX3-206ENST00000442560 MAST1Q9Y2H9 1570 aa11.16□□□□□ -0.62
RFX3-206ENST00000442560 CPS1P31327 1500 aa11.15□□□□□ -0.62
RFX3-206ENST00000442560 ATXN8OSP0DMR3 200 aa11.15□□□□□ -0.62
RFX3-206ENST00000442560 CHADLQ6NUI6 762 aa11.15□□□□□ -0.62
RFX3-206ENST00000442560 SPDYE1Q8NFV5 336 aaPredicted RBP11.15□□□□□ -0.62
RFX3-206ENST00000442560 ZNF692Q9BU19 519 aaPredicted RBP11.15□□□□□ -0.62
RFX3-206ENST00000442560 ERVK-7P63135 1459 aa11.14□□□□□ -0.63
RFX3-206ENST00000442560 KIF15Q9NS87 1388 aa11.14□□□□□ -0.63
RFX3-206ENST00000442560 MED14O60244 1454 aa11.13□□□□□ -0.63
RFX3-206ENST00000442560 ABCC5O15440 1437 aa11.13□□□□□ -0.63
RFX3-206ENST00000442560 CHIC2Q9UKJ5 165 aa11.13□□□□□ -0.63
RFX3-206ENST00000442560 RNF17Q9BXT8 1623 aaKnown RBP11.13□□□□□ -0.63
RFX3-206ENST00000442560 VWDEQ8N2E2 1590 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms