RNA–Protein interactions for RNA: ENST00000439211.6

DHFR-201, Transcript of dihydrofolate reductase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DHFR, Length 3,917 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DHFR-201ENST00000439211 EXOC6Q8TAG9 804 aa20.53■□□□□ 0.88
DHFR-201ENST00000439211 KIF15Q9NS87 1388 aa20.52■□□□□ 0.88
DHFR-201ENST00000439211 KIAA1107Q9UPP5 1409 aa20.52■□□□□ 0.88
DHFR-201ENST00000439211 MYBBP1AQ9BQG0 1328 aaKnown RBP20.51■□□□□ 0.87
DHFR-201ENST00000439211 WDR43Q15061 677 aaKnown RBP eCLIP20.5■□□□□ 0.877e-6■■■■■ 27.3
DHFR-201ENST00000439211 KTN1Q86UP2 1357 aaKnown RBP20.49■□□□□ 0.87
DHFR-201ENST00000439211 PLIN1O60240 522 aa20.49■□□□□ 0.87
DHFR-201ENST00000439211 FRAT2O75474 233 aaPredicted RBP20.49■□□□□ 0.87
DHFR-201ENST00000439211 NLRP13Q86W25 1043 aa20.49■□□□□ 0.87
DHFR-201ENST00000439211 KIAA0586Q9BVV6 1533 aa20.49■□□□□ 0.87
DHFR-201ENST00000439211 TROQ12816 1431 aaPredicted RBP20.49■□□□□ 0.87
DHFR-201ENST00000439211 L1TD1Q5T7N2 865 aaKnown RBP20.48■□□□□ 0.87
DHFR-201ENST00000439211 PLB1Q6P1J6 1458 aa20.48■□□□□ 0.87
DHFR-201ENST00000439211 DENND4BO75064 1496 aaPredicted RBP20.46■□□□□ 0.87
DHFR-201ENST00000439211 RRP1P56182 461 aaKnown RBP20.46■□□□□ 0.87
DHFR-201ENST00000439211 NBPF1Q3BBV0 1214 aa20.46■□□□□ 0.87
DHFR-201ENST00000439211 RBM10P98175 930 aaKnown RBP20.45■□□□□ 0.86
DHFR-201ENST00000439211 SMG6Q86US8 1419 aaKnown RBP20.44■□□□□ 0.86
DHFR-201ENST00000439211 CDCA7LQ96GN5 454 aa20.44■□□□□ 0.86
DHFR-201ENST00000439211 KNSTRNQ9Y448 316 aa20.44■□□□□ 0.86
DHFR-201ENST00000439211 CAMSAP2Q08AD1 1489 aa20.43■□□□□ 0.86
DHFR-201ENST00000439211 PANK3Q9H999 370 aa20.43■□□□□ 0.86
DHFR-201ENST00000439211 KDM5BQ9UGL1 1544 aa20.43■□□□□ 0.86
DHFR-201ENST00000439211 TMF1P82094 1093 aa20.43■□□□□ 0.86
DHFR-201ENST00000439211 NUP153P49790 1475 aaKnown RBP20.42■□□□□ 0.86
DHFR-201ENST00000439211 GRIN2AQ12879 1464 aa20.42■□□□□ 0.86
DHFR-201ENST00000439211 BACH2Q9BYV9 841 aa20.41■□□□□ 0.86
DHFR-201ENST00000439211 WDR62O43379 1518 aa20.4■□□□□ 0.86
DHFR-201ENST00000439211 TARBP1Q13395 1621 aaKnown RBP20.4■□□□□ 0.86
DHFR-201ENST00000439211 ADAMTS12P58397 1594 aa20.4■□□□□ 0.86
DHFR-201ENST00000439211 TEX14Q8IWB6 1497 aa20.4■□□□□ 0.86
DHFR-201ENST00000439211 TRIM44Q96DX7 344 aaPredicted RBP20.39■□□□□ 0.86
DHFR-201ENST00000439211 CCDC144AA2RUR9 1427 aa20.39■□□□□ 0.85
DHFR-201ENST00000439211 PDE4CQ08493 712 aa20.39■□□□□ 0.85
DHFR-201ENST00000439211 CANXP27824 592 aaKnown RBP20.38■□□□□ 0.85
DHFR-201ENST00000439211 ARID3AQ99856 593 aa20.38■□□□□ 0.85
DHFR-201ENST00000439211 PTPRGP23470 1445 aa20.38■□□□□ 0.85
DHFR-201ENST00000439211 C9orf84Q5VXU9 1444 aa20.38■□□□□ 0.85
DHFR-201ENST00000439211 RRAGDQ9NQL2 400 aaPredicted RBP20.38■□□□□ 0.85
DHFR-201ENST00000439211 LRRIQ1Q96JM4 1722 aa20.37■□□□□ 0.85
DHFR-201ENST00000439211 ARHGEF11O15085 1522 aa20.37■□□□□ 0.85
DHFR-201ENST00000439211 CHGAP10645 457 aaKnown RBP20.37■□□□□ 0.85
DHFR-201ENST00000439211 DHX29Q7Z478 1369 aaKnown RBP20.37■□□□□ 0.85
DHFR-201ENST00000439211 GZF1Q9H116 711 aaPredicted RBP20.36■□□□□ 0.85
DHFR-201ENST00000439211 SPATA31E1Q6ZUB1 1445 aa20.35■□□□□ 0.85
DHFR-201ENST00000439211 GPATCH8Q9UKJ3 1502 aaKnown RBP20.35■□□□□ 0.85
DHFR-201ENST00000439211 GCC2Q8IWJ2 1684 aa20.35■□□□□ 0.85
DHFR-201ENST00000439211 BRD4O60885 1362 aaPredicted RBP20.34■□□□□ 0.85
DHFR-201ENST00000439211 RGS3P49796 1198 aa20.34■□□□□ 0.85
DHFR-201ENST00000439211 PZPP20742 1482 aa20.34■□□□□ 0.85
DHFR-201ENST00000439211 PBRM1Q86U86 1689 aa20.34■□□□□ 0.85
DHFR-201ENST00000439211 SLKQ9H2G2 1235 aaPredicted RBP20.33■□□□□ 0.84
DHFR-201ENST00000439211 MS4A1P11836 297 aa20.33■□□□□ 0.84
DHFR-201ENST00000439211 PDE3BQ13370 1112 aa20.32■□□□□ 0.84
DHFR-201ENST00000439211 CRBNQ96SW2 442 aa20.32■□□□□ 0.84
DHFR-201ENST00000439211 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.31■□□□□ 0.84
DHFR-201ENST00000439211 SKAP1Q86WV1 359 aa20.3■□□□□ 0.84
DHFR-201ENST00000439211 GOLGA6L3A6NEY3 463 aa20.3■□□□□ 0.84
DHFR-201ENST00000439211 DISP1Q96F81 1524 aa20.29■□□□□ 0.84
DHFR-201ENST00000439211 SENP3Q9H4L4 574 aaPredicted RBP20.29■□□□□ 0.84
DHFR-201ENST00000439211 POGKQ9P215 609 aa20.29■□□□□ 0.84
DHFR-201ENST00000439211 NEUROD2Q15784 382 aa20.28■□□□□ 0.84
DHFR-201ENST00000439211 SYNJ2O15056 1496 aa20.28■□□□□ 0.84
DHFR-201ENST00000439211 CCDC146Q8IYE0 955 aa20.28■□□□□ 0.84
DHFR-201ENST00000439211 DNMT1P26358 1616 aaKnown RBP20.27■□□□□ 0.84
DHFR-201ENST00000439211 RAPGEF6Q8TEU7 1601 aa20.27■□□□□ 0.84
DHFR-201ENST00000439211 TNNT2P45379 298 aaPredicted RBP20.26■□□□□ 0.83
DHFR-201ENST00000439211 KIAA0556O60303 1618 aa20.26■□□□□ 0.83
DHFR-201ENST00000439211 RSPH4AQ5TD94 716 aa20.26■□□□□ 0.83
DHFR-201ENST00000439211 ADAMTS8Q9UP79 889 aa20.25■□□□□ 0.83
DHFR-201ENST00000439211 BECN1Q14457 450 aa20.23■□□□□ 0.83
DHFR-201ENST00000439211 MAGI1Q96QZ7 1491 aaPredicted RBP20.23■□□□□ 0.83
DHFR-201ENST00000439211 CDCA8Q53HL2 280 aa20.23■□□□□ 0.83
DHFR-201ENST00000439211 EIF4G3O43432 1585 aaKnown RBP20.2■□□□□ 0.82
DHFR-201ENST00000439211 MYH16Q9H6N6 1097 aa20.2■□□□□ 0.82
DHFR-201ENST00000439211 GOLGA2Q08379 1002 aa20.19■□□□□ 0.82
DHFR-201ENST00000439211 AAMPQ13685 434 aa20.19■□□□□ 0.82
DHFR-201ENST00000439211 FGD1P98174 961 aa20.18■□□□□ 0.82
DHFR-201ENST00000439211 EFCAB2Q5VUJ9 269 aa20.18■□□□□ 0.82
DHFR-201ENST00000439211 AMER1Q5JTC6 1135 aaPredicted RBP20.17■□□□□ 0.82
DHFR-201ENST00000439211 RALGAPBQ86X10 1494 aa20.16■□□□□ 0.82
DHFR-201ENST00000439211 ANP32BQ92688 251 aaKnown RBP20.16■□□□□ 0.82
DHFR-201ENST00000439211 FAM13BQ9NYF5 915 aa20.16■□□□□ 0.82
DHFR-201ENST00000439211 SPRYD3Q8NCJ5 442 aa20.15■□□□□ 0.82
DHFR-201ENST00000439211 C20orf194Q5TEA3 1177 aa20.15■□□□□ 0.82
DHFR-201ENST00000439211 KIF14Q15058 1648 aa20.15■□□□□ 0.82
DHFR-201ENST00000439211 PDCL3Q9H2J4 239 aa20.14■□□□□ 0.82
DHFR-201ENST00000439211 CLCN1P35523 988 aa20.14■□□□□ 0.81
DHFR-201ENST00000439211 RNF123Q5XPI4 1314 aa20.14■□□□□ 0.81
DHFR-201ENST00000439211 APAF1O14727 1248 aa20.13■□□□□ 0.81
DHFR-201ENST00000439211 ATP10BO94823 1461 aa20.13■□□□□ 0.81
DHFR-201ENST00000439211 DISP3Q9P2K9 1392 aa20.12■□□□□ 0.81
DHFR-201ENST00000439211 KIF3BO15066 747 aa20.11■□□□□ 0.81
DHFR-201ENST00000439211 SPAG9O60271 1321 aaKnown RBP20.11■□□□□ 0.81
DHFR-201ENST00000439211 PPP2R1AP30153 589 aa20.1■□□□□ 0.81
DHFR-201ENST00000439211 FAM161AQ3B820 660 aa20.1■□□□□ 0.81
DHFR-201ENST00000439211 UPF2Q9HAU5 1272 aaKnown RBP20.09■□□□□ 0.81
DHFR-201ENST00000439211 ARHGAP5Q13017 1502 aa20.09■□□□□ 0.81
DHFR-201ENST00000439211 PER1O15534 1290 aaPredicted RBP20.09■□□□□ 0.81
DHFR-201ENST00000439211 AFAP1Q8N556 730 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms