RNA–Protein interactions for RNA: ENST00000434274.2

LIMS1-209, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 3

Gene LIMS1, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-209ENST00000434274 DMRT2Q9Y5R5 561 aa23.13■■□□□ 1.29
LIMS1-209ENST00000434274 DNMT1P26358 1616 aaKnown RBP23.12■■□□□ 1.29
LIMS1-209ENST00000434274 DUOX2Q9NRD8 1548 aa23.12■■□□□ 1.29
LIMS1-209ENST00000434274 KIF3BO15066 747 aa23.11■■□□□ 1.29
LIMS1-209ENST00000434274 MYO3AQ8NEV4 1616 aa23.1■■□□□ 1.29
LIMS1-209ENST00000434274 PTPRKQ15262 1439 aa23.08■■□□□ 1.29
LIMS1-209ENST00000434274 PZPP20742 1482 aa23.07■■□□□ 1.28
LIMS1-209ENST00000434274 DAPK1P53355 1430 aa23.07■■□□□ 1.28
LIMS1-209ENST00000434274 ERBINQ96RT1 1412 aa23.07■■□□□ 1.28
LIMS1-209ENST00000434274 ABCC5O15440 1437 aa23.05■■□□□ 1.28
LIMS1-209ENST00000434274 CEP170BQ9Y4F5 1589 aaPredicted RBP23.05■■□□□ 1.28
LIMS1-209ENST00000434274 WASHC2CQ9Y4E1 1318 aa23.04■■□□□ 1.28
LIMS1-209ENST00000434274 STRCQ7RTU9 1775 aa23.04■■□□□ 1.28
LIMS1-209ENST00000434274 KIF15Q9NS87 1388 aa23.03■■□□□ 1.28
LIMS1-209ENST00000434274 PLA2R1Q13018 1463 aa23.03■■□□□ 1.28
LIMS1-209ENST00000434274 PTPRTO14522 1441 aa23.02■■□□□ 1.28
LIMS1-209ENST00000434274 NCOA1Q15788 1441 aa23.02■■□□□ 1.28
LIMS1-209ENST00000434274 ANKRD30AQ9BXX3 1397 aa23.01■■□□□ 1.27
LIMS1-209ENST00000434274 A2ML1A8K2U0 1454 aa22.99■■□□□ 1.27
LIMS1-209ENST00000434274 ABCC3O15438 1527 aa22.99■■□□□ 1.27
LIMS1-209ENST00000434274 PRDM15P57071 1507 aaPredicted RBP22.99■■□□□ 1.27
LIMS1-209ENST00000434274 CAMSAP1Q5T5Y3 1602 aa22.99■■□□□ 1.27
LIMS1-209ENST00000434274 TNRQ92752 1358 aa22.97■■□□□ 1.27
LIMS1-209ENST00000434274 ADGRL2O95490 1459 aa22.97■■□□□ 1.27
LIMS1-209ENST00000434274 NLRP1Q9C000 1473 aa22.97■■□□□ 1.27
LIMS1-209ENST00000434274 MROH1Q8NDA8 1641 aa22.97■■□□□ 1.27
LIMS1-209ENST00000434274 DEPDC5O75140 1603 aa22.96■■□□□ 1.27
LIMS1-209ENST00000434274 PKD2Q13563 968 aa22.94■■□□□ 1.26
LIMS1-209ENST00000434274 ILDR1Q86SU0 546 aaPredicted RBP22.94■■□□□ 1.26
LIMS1-209ENST00000434274 FBXO41Q8TF61 875 aa22.94■■□□□ 1.26
LIMS1-209ENST00000434274 KANK1Q14678 1352 aa22.92■■□□□ 1.26
LIMS1-209ENST00000434274 SPATA31D1Q6ZQQ2 1576 aa22.92■■□□□ 1.26
LIMS1-209ENST00000434274 CEP152O94986 1710 aa22.91■■□□□ 1.26
LIMS1-209ENST00000434274 ARHGAP31Q2M1Z3 1444 aa22.9■■□□□ 1.26
LIMS1-209ENST00000434274 FAM50AQ14320 339 aaKnown RBP22.88■■□□□ 1.25
LIMS1-209ENST00000434274 RRP7BPQ9NSQ0 103 aa22.88■■□□□ 1.25
LIMS1-209ENST00000434274 ERVK-7P63135 1459 aa22.87■■□□□ 1.25
LIMS1-209ENST00000434274 POLR1AO95602 1720 aaPredicted RBP22.87■■□□□ 1.25
LIMS1-209ENST00000434274 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.86■■□□□ 1.25
LIMS1-209ENST00000434274 LMTK2Q8IWU2 1503 aa22.85■■□□□ 1.25
LIMS1-209ENST00000434274 UGGT1Q9NYU2 1555 aa22.84■■□□□ 1.25
LIMS1-209ENST00000434274 IQSEC2Q5JU85 1478 aa22.84■■□□□ 1.25
LIMS1-209ENST00000434274 CERKQ8TCT0 537 aa22.83■■□□□ 1.25
LIMS1-209ENST00000434274 VWDEQ8N2E2 1590 aa22.83■■□□□ 1.25
LIMS1-209ENST00000434274 ROCK1Q13464 1354 aa22.82■■□□□ 1.24
LIMS1-209ENST00000434274 THEMISQ8N1K5 641 aaPredicted RBP22.82■■□□□ 1.24
LIMS1-209ENST00000434274 FBXO31Q5XUX0 539 aaPredicted RBP22.81■■□□□ 1.24
LIMS1-209ENST00000434274 ANKRD50Q9ULJ7 1429 aa22.81■■□□□ 1.24
LIMS1-209ENST00000434274 CHIC2Q9UKJ5 165 aa22.8■■□□□ 1.24
LIMS1-209ENST00000434274 EFCAB6Q5THR3 1501 aa22.77■■□□□ 1.24
LIMS1-209ENST00000434274 RPRD2Q5VT52 1461 aaKnown RBP22.76■■□□□ 1.23
LIMS1-209ENST00000434274 KDM5AP29375 1690 aaKnown RBP22.76■■□□□ 1.23
LIMS1-209ENST00000434274 ANKLE2Q86XL3 938 aa22.75■■□□□ 1.23
LIMS1-209ENST00000434274 NCKAP5LQ9HCH0 1330 aa22.75■■□□□ 1.23
LIMS1-209ENST00000434274 LTBP4Q8N2S1 1624 aa22.75■■□□□ 1.23
LIMS1-209ENST00000434274 UNC13BO14795 1591 aa22.74■■□□□ 1.23
LIMS1-209ENST00000434274 NEURL4Q96JN8 1562 aa22.73■■□□□ 1.23
LIMS1-209ENST00000434274 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.73■■□□□ 1.23
LIMS1-209ENST00000434274 UBR1Q8IWV7 1749 aa22.73■■□□□ 1.23
LIMS1-209ENST00000434274 MED14O60244 1454 aa22.73■■□□□ 1.23
LIMS1-209ENST00000434274 CFAP65Q6ZU64 1925 aaKnown RBP22.72■■□□□ 1.23
LIMS1-209ENST00000434274 TET3O43151 1660 aa22.71■■□□□ 1.23
LIMS1-209ENST00000434274 GCC2Q8IWJ2 1684 aa22.7■■□□□ 1.22
LIMS1-209ENST00000434274 IQGAP1P46940 1657 aa22.68■■□□□ 1.22
LIMS1-209ENST00000434274 RRBP1Q9P2E9 1410 aaKnown RBP22.68■■□□□ 1.22
LIMS1-209ENST00000434274 CPS1P31327 1500 aa22.67■■□□□ 1.22
LIMS1-209ENST00000434274 NPHP4O75161 1426 aaPredicted RBP22.67■■□□□ 1.22
LIMS1-209ENST00000434274 SLIT1O75093 1534 aa22.67■■□□□ 1.22
LIMS1-209ENST00000434274 SCAF11Q99590 1463 aaKnown RBP22.65■■□□□ 1.22
LIMS1-209ENST00000434274 NOS1P29475 1434 aa22.65■■□□□ 1.22
LIMS1-209ENST00000434274 ARHGAP23Q9P227 1491 aa22.64■■□□□ 1.21
LIMS1-209ENST00000434274 PIK3C2BO00750 1634 aa22.64■■□□□ 1.21
LIMS1-209ENST00000434274 IQGAP3Q86VI3 1631 aa22.64■■□□□ 1.21
LIMS1-209ENST00000434274 ZNF335Q9H4Z2 1342 aaPredicted RBP22.61■■□□□ 1.21
LIMS1-209ENST00000434274 SYNMO15061 1565 aa22.61■■□□□ 1.21
LIMS1-209ENST00000434274 SLC52A1Q9NWF4 448 aa22.61■■□□□ 1.21
LIMS1-209ENST00000434274 ADGRB3O60242 1522 aa22.61■■□□□ 1.21
LIMS1-209ENST00000434274 STAG3Q9UJ98 1225 aa22.6■■□□□ 1.21
LIMS1-209ENST00000434274 EID1Q9Y6B2 187 aa22.6■■□□□ 1.21
LIMS1-209ENST00000434274 TMEM2Q9UHN6 1383 aa22.56■■□□□ 1.2
LIMS1-209ENST00000434274 E9PCH4 1651 aa22.53■■□□□ 1.2
LIMS1-209ENST00000434274 ITGAEP38570 1179 aa22.53■■□□□ 1.2
LIMS1-209ENST00000434274 PPARGC1BQ86YN6 1023 aaKnown RBP22.52■■□□□ 1.2
LIMS1-209ENST00000434274 NUP155O75694 1391 aa22.51■■□□□ 1.19
LIMS1-209ENST00000434274 IDI1Q13907 227 aa22.51■■□□□ 1.19
LIMS1-209ENST00000434274 TXNDC2Q86VQ3 553 aa22.51■■□□□ 1.19
LIMS1-209ENST00000434274 HDGFP51858 240 aaKnown RBP22.49■■□□□ 1.19
LIMS1-209ENST00000434274 HFM1A2PYH4 1435 aa22.47■■□□□ 1.19
LIMS1-209ENST00000434274 TMEM131LA2VDJ0 1609 aa22.46■■□□□ 1.19
LIMS1-209ENST00000434274 NAIPQ13075 1403 aa22.45■■□□□ 1.18
LIMS1-209ENST00000434274 SPHKAPQ2M3C7 1700 aa22.44■■□□□ 1.18
LIMS1-209ENST00000434274 UBAP1LF5GYI3 381 aa22.43■■□□□ 1.18
LIMS1-209ENST00000434274 LTKP29376 864 aa22.43■■□□□ 1.18
LIMS1-209ENST00000434274 TOM1O60784 492 aa22.42■■□□□ 1.18
LIMS1-209ENST00000434274 ACIN1Q9UKV3 1341 aaKnown RBP22.41■■□□□ 1.18
LIMS1-209ENST00000434274 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.41■■□□□ 1.18
LIMS1-209ENST00000434274 MYO5BQ9ULV0 1848 aa22.41■■□□□ 1.18
LIMS1-209ENST00000434274 ZFYVE9O95405 1425 aa22.4■■□□□ 1.18
LIMS1-209ENST00000434274 PLEKHG1Q9ULL1 1385 aa22.38■■□□□ 1.17
LIMS1-209ENST00000434274 STRCP1A6NGW2 1772 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms