RNA–Protein interactions for RNA: ENST00000428704.1

HDAC1-202, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 664 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-202ENST00000428704 FMN1Q68DA7 1419 aa13.92□□□□□ -0.18
HDAC1-202ENST00000428704 POTEAQ6S8J7 498 aa13.92□□□□□ -0.18
HDAC1-202ENST00000428704 SUPT6HQ7KZ85 1726 aaKnown RBP13.92□□□□□ -0.18
HDAC1-202ENST00000428704 CLIP1P30622 1438 aa13.91□□□□□ -0.18
HDAC1-202ENST00000428704 ALKQ9UM73 1620 aa13.91□□□□□ -0.18
HDAC1-202ENST00000428704 DSG3P32926 999 aa13.91□□□□□ -0.18
HDAC1-202ENST00000428704 A2ML1A8K2U0 1454 aa13.91□□□□□ -0.18
HDAC1-202ENST00000428704 TROQ12816 1431 aaPredicted RBP13.9□□□□□ -0.19
HDAC1-202ENST00000428704 GGT6Q6P531 493 aa13.89□□□□□ -0.19
HDAC1-202ENST00000428704 ABCC1P33527 1531 aa13.89□□□□□ -0.19
HDAC1-202ENST00000428704 CLTCQ00610 1675 aaKnown RBP13.88□□□□□ -0.19
HDAC1-202ENST00000428704 KIDINS220Q9ULH0 1771 aa13.87□□□□□ -0.19
HDAC1-202ENST00000428704 ANKLE2Q86XL3 938 aa13.87□□□□□ -0.19
HDAC1-202ENST00000428704 NEURL4Q96JN8 1562 aa13.87□□□□□ -0.19
HDAC1-202ENST00000428704 DNMT1P26358 1616 aaKnown RBP13.86□□□□□ -0.19
HDAC1-202ENST00000428704 VWDEQ8N2E2 1590 aa13.86□□□□□ -0.19
HDAC1-202ENST00000428704 SPAG9O60271 1321 aaKnown RBP13.86□□□□□ -0.19
HDAC1-202ENST00000428704 ABCB7O75027 752 aa13.84□□□□□ -0.19
HDAC1-202ENST00000428704 POLA2Q14181 598 aa13.84□□□□□ -0.19
HDAC1-202ENST00000428704 NPHP4O75161 1426 aaPredicted RBP13.83□□□□□ -0.2
HDAC1-202ENST00000428704 CASKIN1Q8WXD9 1431 aa13.83□□□□□ -0.2
HDAC1-202ENST00000428704 ITSN2Q9NZM3 1697 aa13.83□□□□□ -0.2
HDAC1-202ENST00000428704 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.83□□□□□ -0.2
HDAC1-202ENST00000428704 POLR1AO95602 1720 aaPredicted RBP13.82□□□□□ -0.2
HDAC1-202ENST00000428704 LRRC7Q96NW7 1537 aa13.82□□□□□ -0.2
HDAC1-202ENST00000428704 SAMD9LQ8IVG5 1584 aa13.82□□□□□ -0.2
HDAC1-202ENST00000428704 RNF17Q9BXT8 1623 aaKnown RBP13.82□□□□□ -0.2
HDAC1-202ENST00000428704 TNRQ92752 1358 aa13.82□□□□□ -0.2
HDAC1-202ENST00000428704 FYCO1Q9BQS8 1478 aa13.81□□□□□ -0.2
HDAC1-202ENST00000428704 ZNF777Q9ULD5 760 aaPredicted RBP13.81□□□□□ -0.2
HDAC1-202ENST00000428704 A2MP01023 1474 aa13.8□□□□□ -0.2
HDAC1-202ENST00000428704 PREX2Q70Z35 1606 aa13.8□□□□□ -0.2
HDAC1-202ENST00000428704 THEMISQ8N1K5 641 aaPredicted RBP13.8□□□□□ -0.2
HDAC1-202ENST00000428704 CDC42BPBQ9Y5S2 1711 aa13.8□□□□□ -0.2
HDAC1-202ENST00000428704 CCDC18Q5T9S5 1454 aa13.8□□□□□ -0.2
HDAC1-202ENST00000428704 FBXO31Q5XUX0 539 aaPredicted RBP13.78□□□□□ -0.2
HDAC1-202ENST00000428704 UPF1Q92900 1129 aaKnown RBP eCLIP13.78□□□□□ -0.2
HDAC1-202ENST00000428704 MED14O60244 1454 aa13.78□□□□□ -0.2
HDAC1-202ENST00000428704 PLXNC1O60486 1568 aa13.78□□□□□ -0.2
HDAC1-202ENST00000428704 SETD1AO15047 1707 aaKnown RBP13.78□□□□□ -0.2
HDAC1-202ENST00000428704 HNRNPMP52272 730 aaKnown RBP eCLIP13.77□□□□□ -0.21
HDAC1-202ENST00000428704 CEP162Q5TB80 1403 aa13.77□□□□□ -0.21
HDAC1-202ENST00000428704 SYNMO15061 1565 aa13.76□□□□□ -0.21
HDAC1-202ENST00000428704 ATP7AQ04656 1500 aa13.76□□□□□ -0.21
HDAC1-202ENST00000428704 SYCP2Q9BX26 1530 aa13.75□□□□□ -0.21
HDAC1-202ENST00000428704 FAM135AQ9P2D6 1515 aa13.75□□□□□ -0.21
HDAC1-202ENST00000428704 SRCAPQ6ZRS2 3230 aa13.74□□□□□ -0.21
HDAC1-202ENST00000428704 CDC42BPAQ5VT25 1732 aa13.73□□□□□ -0.21
HDAC1-202ENST00000428704 FAM135BQ49AJ0 1406 aa13.73□□□□□ -0.21
HDAC1-202ENST00000428704 DEPDC5O75140 1603 aa13.72□□□□□ -0.21
HDAC1-202ENST00000428704 UGGT1Q9NYU2 1555 aa13.72□□□□□ -0.21
HDAC1-202ENST00000428704 PZPP20742 1482 aa13.71□□□□□ -0.21
HDAC1-202ENST00000428704 NLRP1Q9C000 1473 aa13.71□□□□□ -0.21
HDAC1-202ENST00000428704 IQGAP1P46940 1657 aa13.71□□□□□ -0.21
HDAC1-202ENST00000428704 MIA2Q96PC5 1412 aa13.7□□□□□ -0.22
HDAC1-202ENST00000428704 INO80Q9ULG1 1556 aaPredicted RBP13.7□□□□□ -0.22
HDAC1-202ENST00000428704 STRCP1A6NGW2 1772 aa13.69□□□□□ -0.22
HDAC1-202ENST00000428704 TRIM52Q96A61 297 aa13.69□□□□□ -0.22
HDAC1-202ENST00000428704 LOC105371045A0A1W2PR82 267 aa13.68□□□□□ -0.22
HDAC1-202ENST00000428704 KIAA1107Q9UPP5 1409 aa13.67□□□□□ -0.22
HDAC1-202ENST00000428704 PLEKHH2Q8IVE3 1493 aa13.67□□□□□ -0.22
HDAC1-202ENST00000428704 WASHC2CQ9Y4E1 1318 aa13.66□□□□□ -0.22
HDAC1-202ENST00000428704 KDM5DQ9BY66 1539 aa13.65□□□□□ -0.22
HDAC1-202ENST00000428704 KIF3BO15066 747 aa13.65□□□□□ -0.22
HDAC1-202ENST00000428704 CFDP1Q9UEE9 299 aaPredicted RBP13.65□□□□□ -0.22
HDAC1-202ENST00000428704 EHBP1L1Q8N3D4 1523 aa13.64□□□□□ -0.23
HDAC1-202ENST00000428704 ZNF772Q68DY9 489 aaPredicted RBP13.64□□□□□ -0.23
HDAC1-202ENST00000428704 GPATCH8Q9UKJ3 1502 aaKnown RBP13.64□□□□□ -0.23
HDAC1-202ENST00000428704 DHX29Q7Z478 1369 aaKnown RBP13.63□□□□□ -0.23
HDAC1-202ENST00000428704 JCADQ9P266 1359 aa13.63□□□□□ -0.23
HDAC1-202ENST00000428704 MEX3CQ5U5Q3 659 aaKnown RBP13.63□□□□□ -0.23
HDAC1-202ENST00000428704 ZBTB12Q9Y330 459 aaPredicted RBP13.63□□□□□ -0.23
HDAC1-202ENST00000428704 ADGBQ8N7X0 1667 aa13.63□□□□□ -0.23
HDAC1-202ENST00000428704 TIAM1Q13009 1591 aa13.62□□□□□ -0.23
HDAC1-202ENST00000428704 VPS8Q8N3P4 1428 aa13.62□□□□□ -0.23
HDAC1-202ENST00000428704 TMEM94Q12767 1356 aa13.6□□□□□ -0.23
HDAC1-202ENST00000428704 RXRBP28702 533 aa13.6□□□□□ -0.23
HDAC1-202ENST00000428704 SCAF11Q99590 1463 aaKnown RBP13.6□□□□□ -0.23
HDAC1-202ENST00000428704 ROBO1Q9Y6N7 1651 aa13.59□□□□□ -0.23
HDAC1-202ENST00000428704 LRRC9Q6ZRR7 1453 aa13.59□□□□□ -0.23
HDAC1-202ENST00000428704 MTUS2Q5JR59 1369 aa13.58□□□□□ -0.23
HDAC1-202ENST00000428704 CCNB3Q8WWL7 1395 aa13.58□□□□□ -0.23
HDAC1-202ENST00000428704 ZC3H13Q5T200 1668 aaKnown RBP13.58□□□□□ -0.24
HDAC1-202ENST00000428704 RTEL1-TNFRSF6BF6WH68 1400 aa13.57□□□□□ -0.24
HDAC1-202ENST00000428704 TXNDC2Q86VQ3 553 aa13.57□□□□□ -0.24
HDAC1-202ENST00000428704 LTKP29376 864 aa13.55□□□□□ -0.24
HDAC1-202ENST00000428704 RBM33Q96EV2 1170 aaKnown RBP13.55□□□□□ -0.24
HDAC1-202ENST00000428704 SPATA31A6Q5VVP1 1343 aa13.55□□□□□ -0.24
HDAC1-202ENST00000428704 LRP6O75581 1613 aa13.54□□□□□ -0.24
HDAC1-202ENST00000428704 PROSER2Q86WR7 435 aaPredicted RBP13.54□□□□□ -0.24
HDAC1-202ENST00000428704 EID1Q9Y6B2 187 aa13.54□□□□□ -0.24
HDAC1-202ENST00000428704 XIRP1Q702N8 1843 aaKnown RBP13.54□□□□□ -0.24
HDAC1-202ENST00000428704 ZNF644Q9H582 1327 aaPredicted RBP13.54□□□□□ -0.24
HDAC1-202ENST00000428704 NCOA2Q15596 1464 aa13.54□□□□□ -0.24
HDAC1-202ENST00000428704 MAP3K1Q13233 1512 aa13.54□□□□□ -0.24
HDAC1-202ENST00000428704 MKRN4PQ13434 485 aaPredicted RBP13.53□□□□□ -0.24
HDAC1-202ENST00000428704 CDK12Q9NYV4 1490 aaPredicted RBP13.53□□□□□ -0.24
HDAC1-202ENST00000428704 KCNA6P17658 529 aa13.52□□□□□ -0.25
HDAC1-202ENST00000428704 SLAIN2Q9P270 581 aa13.52□□□□□ -0.25
HDAC1-202ENST00000428704 MSH6P52701 1360 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms