RNA–Protein interactions for RNA: ENST00000427943.1

PSPC1-202, Transcript of paraspeckle component 1, humanhuman

TSL 5

Gene PSPC1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-202ENST00000427943 FAM135AQ9P2D6 1515 aa28.81■■■□□ 2.2
PSPC1-202ENST00000427943 DNMT1P26358 1616 aaKnown RBP28.8■■■□□ 2.2
PSPC1-202ENST00000427943 FGD6Q6ZV73 1430 aa28.79■■■□□ 2.2
PSPC1-202ENST00000427943 CAMSAP1Q5T5Y3 1602 aa28.79■■■□□ 2.2
PSPC1-202ENST00000427943 CEP170BQ9Y4F5 1589 aaPredicted RBP28.79■■■□□ 2.2
PSPC1-202ENST00000427943 TCOF1Q13428 1488 aaKnown RBP28.76■■■□□ 2.19
PSPC1-202ENST00000427943 SHANK2Q9UPX8 1470 aa28.76■■■□□ 2.19
PSPC1-202ENST00000427943 NCOA1Q15788 1441 aa28.75■■■□□ 2.19
PSPC1-202ENST00000427943 ZC3H13Q5T200 1668 aaKnown RBP28.74■■■□□ 2.19
PSPC1-202ENST00000427943 ABCC5O15440 1437 aa28.74■■■□□ 2.19
PSPC1-202ENST00000427943 CEP152O94986 1710 aa28.74■■■□□ 2.19
PSPC1-202ENST00000427943 MROH1Q8NDA8 1641 aa28.73■■■□□ 2.19
PSPC1-202ENST00000427943 DUOX2Q9NRD8 1548 aa28.73■■■□□ 2.19
PSPC1-202ENST00000427943 PZPP20742 1482 aa28.72■■■□□ 2.19
PSPC1-202ENST00000427943 DAPK1P53355 1430 aa28.72■■■□□ 2.19
PSPC1-202ENST00000427943 WASHC2CQ9Y4E1 1318 aa28.71■■■□□ 2.19
PSPC1-202ENST00000427943 FBXO41Q8TF61 875 aa28.71■■■□□ 2.19
PSPC1-202ENST00000427943 DMRT2Q9Y5R5 561 aa28.7■■■□□ 2.18
PSPC1-202ENST00000427943 ABCC3O15438 1527 aa28.69■■■□□ 2.18
PSPC1-202ENST00000427943 PTPRTO14522 1441 aa28.68■■■□□ 2.18
PSPC1-202ENST00000427943 KIF15Q9NS87 1388 aa28.67■■■□□ 2.18
PSPC1-202ENST00000427943 FBXO31Q5XUX0 539 aaPredicted RBP28.66■■■□□ 2.18
PSPC1-202ENST00000427943 A2ML1A8K2U0 1454 aa28.66■■■□□ 2.18
PSPC1-202ENST00000427943 TNRQ92752 1358 aa28.64■■■□□ 2.18
PSPC1-202ENST00000427943 CFAP65Q6ZU64 1925 aaKnown RBP28.63■■■□□ 2.17
PSPC1-202ENST00000427943 PLA2R1Q13018 1463 aa28.63■■■□□ 2.17
PSPC1-202ENST00000427943 CERKQ8TCT0 537 aa28.62■■■□□ 2.17
PSPC1-202ENST00000427943 ERBINQ96RT1 1412 aa28.61■■■□□ 2.17
PSPC1-202ENST00000427943 PRDM15P57071 1507 aaPredicted RBP28.61■■■□□ 2.17
PSPC1-202ENST00000427943 RRP7BPQ9NSQ0 103 aa28.61■■■□□ 2.17
PSPC1-202ENST00000427943 POLR1AO95602 1720 aaPredicted RBP28.6■■■□□ 2.17
PSPC1-202ENST00000427943 DEPDC5O75140 1603 aa28.6■■■□□ 2.17
PSPC1-202ENST00000427943 NCKAP5LQ9HCH0 1330 aa28.59■■■□□ 2.17
PSPC1-202ENST00000427943 CHIC2Q9UKJ5 165 aa28.58■■■□□ 2.17
PSPC1-202ENST00000427943 SPATA31D1Q6ZQQ2 1576 aa28.56■■■□□ 2.16
PSPC1-202ENST00000427943 ANKRD30AQ9BXX3 1397 aa28.54■■■□□ 2.16
PSPC1-202ENST00000427943 FAM50AQ14320 339 aaKnown RBP28.54■■■□□ 2.16
PSPC1-202ENST00000427943 LTBP4Q8N2S1 1624 aa28.53■■■□□ 2.16
PSPC1-202ENST00000427943 ERVK-7P63135 1459 aa28.53■■■□□ 2.16
PSPC1-202ENST00000427943 NLRP1Q9C000 1473 aa28.53■■■□□ 2.16
PSPC1-202ENST00000427943 ADGRL2O95490 1459 aa28.52■■■□□ 2.16
PSPC1-202ENST00000427943 UGGT1Q9NYU2 1555 aa28.5■■■□□ 2.15
PSPC1-202ENST00000427943 PKD2Q13563 968 aa28.5■■■□□ 2.15
PSPC1-202ENST00000427943 NEURL4Q96JN8 1562 aa28.49■■■□□ 2.15
PSPC1-202ENST00000427943 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.47■■■□□ 2.154e-7■■■■□ 23.8
PSPC1-202ENST00000427943 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.44■■■□□ 2.14
PSPC1-202ENST00000427943 UBR1Q8IWV7 1749 aa28.43■■■□□ 2.14
PSPC1-202ENST00000427943 VWDEQ8N2E2 1590 aa28.43■■■□□ 2.14
PSPC1-202ENST00000427943 KANK1Q14678 1352 aa28.42■■■□□ 2.14
PSPC1-202ENST00000427943 PPARGC1BQ86YN6 1023 aaKnown RBP28.42■■■□□ 2.14
PSPC1-202ENST00000427943 ZNF335Q9H4Z2 1342 aaPredicted RBP28.42■■■□□ 2.14
PSPC1-202ENST00000427943 ARHGAP31Q2M1Z3 1444 aa28.41■■■□□ 2.14
PSPC1-202ENST00000427943 LMTK2Q8IWU2 1503 aa28.38■■■□□ 2.13
PSPC1-202ENST00000427943 THEMISQ8N1K5 641 aaPredicted RBP28.37■■■□□ 2.13
PSPC1-202ENST00000427943 ANKRD50Q9ULJ7 1429 aa28.35■■■□□ 2.13
PSPC1-202ENST00000427943 EFCAB6Q5THR3 1501 aa28.35■■■□□ 2.13
PSPC1-202ENST00000427943 PIK3C2BO00750 1634 aa28.35■■■□□ 2.13
PSPC1-202ENST00000427943 IQGAP1P46940 1657 aa28.35■■■□□ 2.13
PSPC1-202ENST00000427943 IQSEC2Q5JU85 1478 aa28.34■■■□□ 2.13
PSPC1-202ENST00000427943 ANKLE2Q86XL3 938 aa28.32■■■□□ 2.12
PSPC1-202ENST00000427943 UNC13BO14795 1591 aa28.3■■■□□ 2.12
PSPC1-202ENST00000427943 SYNMO15061 1565 aa28.3■■■□□ 2.12
PSPC1-202ENST00000427943 NPHP4O75161 1426 aaPredicted RBP28.3■■■□□ 2.12
PSPC1-202ENST00000427943 MED14O60244 1454 aa28.29■■■□□ 2.12
PSPC1-202ENST00000427943 TET3O43151 1660 aa28.28■■■□□ 2.12
PSPC1-202ENST00000427943 GCC2Q8IWJ2 1684 aa28.27■■■□□ 2.12
PSPC1-202ENST00000427943 ITGAEP38570 1179 aa28.25■■■□□ 2.11
PSPC1-202ENST00000427943 ROCK1Q13464 1354 aa28.24■■■□□ 2.11
PSPC1-202ENST00000427943 KDM5AP29375 1690 aaKnown RBP28.23■■■□□ 2.11
PSPC1-202ENST00000427943 SLIT1O75093 1534 aa28.23■■■□□ 2.11
PSPC1-202ENST00000427943 SCAF11Q99590 1463 aaKnown RBP28.21■■■□□ 2.11
PSPC1-202ENST00000427943 ARHGAP23Q9P227 1491 aa28.21■■■□□ 2.11
PSPC1-202ENST00000427943 CPS1P31327 1500 aa28.21■■■□□ 2.11
PSPC1-202ENST00000427943 STRCP1A6NGW2 1772 aa28.21■■■□□ 2.11
PSPC1-202ENST00000427943 NOS1P29475 1434 aa28.2■■■□□ 2.11
PSPC1-202ENST00000427943 MYO5BQ9ULV0 1848 aa28.19■■■□□ 2.1
PSPC1-202ENST00000427943 IQGAP3Q86VI3 1631 aa28.18■■■□□ 2.1
PSPC1-202ENST00000427943 E9PCH4 1651 aa28.18■■■□□ 2.1
PSPC1-202ENST00000427943 RPRD2Q5VT52 1461 aaKnown RBP28.17■■■□□ 2.1
PSPC1-202ENST00000427943 ADGRB3O60242 1522 aa28.17■■■□□ 2.1
PSPC1-202ENST00000427943 STAG3Q9UJ98 1225 aa28.15■■■□□ 2.1
PSPC1-202ENST00000427943 IDI1Q13907 227 aa28.14■■■□□ 2.1
PSPC1-202ENST00000427943 RRBP1Q9P2E9 1410 aaKnown RBP28.13■■■□□ 2.09
PSPC1-202ENST00000427943 LTKP29376 864 aa28.13■■■□□ 2.09
PSPC1-202ENST00000427943 TMEM2Q9UHN6 1383 aa28.11■■■□□ 2.09
PSPC1-202ENST00000427943 UBAP1LF5GYI3 381 aa28.11■■■□□ 2.09
PSPC1-202ENST00000427943 TXNDC2Q86VQ3 553 aa28.11■■■□□ 2.09
PSPC1-202ENST00000427943 EID1Q9Y6B2 187 aa28.07■■■□□ 2.08
PSPC1-202ENST00000427943 TMEM131LA2VDJ0 1609 aa28.04■■■□□ 2.08
PSPC1-202ENST00000427943 NUP155O75694 1391 aa28.04■■■□□ 2.08
PSPC1-202ENST00000427943 SLC52A1Q9NWF4 448 aa28.04■■■□□ 2.08
PSPC1-202ENST00000427943 LRRC7Q96NW7 1537 aa28.02■■■□□ 2.08
PSPC1-202ENST00000427943 XIRP1Q702N8 1843 aaKnown RBP28.01■■■□□ 2.07
PSPC1-202ENST00000427943 SPHKAPQ2M3C7 1700 aa28■■■□□ 2.07
PSPC1-202ENST00000427943 ALKQ9UM73 1620 aa27.97■■■□□ 2.07
PSPC1-202ENST00000427943 SCAF1Q9H7N4 1312 aaKnown RBP27.95■■■□□ 2.07
PSPC1-202ENST00000427943 NAIPQ13075 1403 aa27.95■■■□□ 2.07
PSPC1-202ENST00000427943 ZFYVE9O95405 1425 aa27.94■■■□□ 2.06
PSPC1-202ENST00000427943 PIP4K2BP78356 416 aa27.93■■■□□ 2.06
PSPC1-202ENST00000427943 RIMS2Q9UQ26 1411 aa27.92■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms