RNA–Protein interactions for RNA: ENST00000427534.6

SPG11-202, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPG11, Length 6,935 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-202ENST00000427534 NUTM2GQ5VZR2 741 aa16.61■□□□□ 0.25
SPG11-202ENST00000427534 SMC4Q9NTJ3 1288 aa16.61■□□□□ 0.25
SPG11-202ENST00000427534 BCL2L13Q9BXK5 485 aa16.61■□□□□ 0.25
SPG11-202ENST00000427534 MPHOSPH9Q99550 1183 aa16.61■□□□□ 0.25
SPG11-202ENST00000427534 TOP2AP11388 1531 aaKnown RBP16.6■□□□□ 0.25
SPG11-202ENST00000427534 TCERG1O14776 1098 aaKnown RBP16.6■□□□□ 0.25
SPG11-202ENST00000427534 MS4A1P11836 297 aa16.6■□□□□ 0.25
SPG11-202ENST00000427534 STK31Q9BXU1 1019 aa16.6■□□□□ 0.25
SPG11-202ENST00000427534 NOC3LQ8WTT2 800 aaKnown RBP16.59■□□□□ 0.25
SPG11-202ENST00000427534 CHMP4BQ9H444 224 aaKnown RBP16.59■□□□□ 0.25
SPG11-202ENST00000427534 SPAG9O60271 1321 aaKnown RBP16.59■□□□□ 0.25
SPG11-202ENST00000427534 EIF2S2P20042 333 aaKnown RBP16.59■□□□□ 0.25
SPG11-202ENST00000427534 PPP1R1BQ9UD71 204 aaPredicted RBP16.58■□□□□ 0.24
SPG11-202ENST00000427534 KTN1Q86UP2 1357 aaKnown RBP16.58■□□□□ 0.24
SPG11-202ENST00000427534 MARCH6O60337 910 aa16.56■□□□□ 0.24
SPG11-202ENST00000427534 USP35Q9P2H5 1018 aa16.54■□□□□ 0.24
SPG11-202ENST00000427534 WIZO95785 1651 aa16.54■□□□□ 0.24
SPG11-202ENST00000427534 ANKRD30AQ9BXX3 1397 aa16.54■□□□□ 0.24
SPG11-202ENST00000427534 MINK1Q8N4C8 1332 aaPredicted RBP16.54■□□□□ 0.24
SPG11-202ENST00000427534 KDM4AO75164 1064 aa16.54■□□□□ 0.24
SPG11-202ENST00000427534 EFCAB2Q5VUJ9 269 aa16.53■□□□□ 0.24
SPG11-202ENST00000427534 PES1O00541 588 aaKnown RBP16.53■□□□□ 0.24
SPG11-202ENST00000427534 L1TD1Q5T7N2 865 aaKnown RBP16.53■□□□□ 0.24
SPG11-202ENST00000427534 RILPL2Q969X0 211 aa16.52■□□□□ 0.24
SPG11-202ENST00000427534 RAPGEF2Q9Y4G8 1499 aa16.52■□□□□ 0.24
SPG11-202ENST00000427534 CADPSQ9ULU8 1353 aa16.52■□□□□ 0.24
SPG11-202ENST00000427534 FAM177BA6PVY3 158 aa16.52■□□□□ 0.23
SPG11-202ENST00000427534 KIAA2012Q0VF49 1180 aa16.52■□□□□ 0.23
SPG11-202ENST00000427534 FHOD3Q2V2M9 1422 aa16.51■□□□□ 0.23
SPG11-202ENST00000427534 IPO8O15397 1037 aaKnown RBP16.51■□□□□ 0.23
SPG11-202ENST00000427534 MSNP26038 577 aaKnown RBP16.5■□□□□ 0.23
SPG11-202ENST00000427534 FOSBP53539 338 aa16.49■□□□□ 0.23
SPG11-202ENST00000427534 NRDCO43847 1150 aa16.49■□□□□ 0.23
SPG11-202ENST00000427534 MTMR7Q9Y216 660 aa16.49■□□□□ 0.23
SPG11-202ENST00000427534 C1orf141Q5JVX7 400 aa16.49■□□□□ 0.23
SPG11-202ENST00000427534 RCAN3Q9UKA8 241 aa16.48■□□□□ 0.23
SPG11-202ENST00000427534 FYB1O15117 783 aa16.48■□□□□ 0.23
SPG11-202ENST00000427534 RALBP1Q15311 655 aa16.48■□□□□ 0.23
SPG11-202ENST00000427534 PLIN1O60240 522 aa16.47■□□□□ 0.23
SPG11-202ENST00000427534 GPATCH3Q96I76 525 aa16.47■□□□□ 0.23
SPG11-202ENST00000427534 TERF2IPQ9NYB0 399 aa16.46■□□□□ 0.23
SPG11-202ENST00000427534 L3MBTL2Q969R5 705 aa16.46■□□□□ 0.23
SPG11-202ENST00000427534 PSME1Q06323 249 aa16.45■□□□□ 0.22
SPG11-202ENST00000427534 CHAF1AQ13111 956 aaPredicted RBP16.45■□□□□ 0.22
SPG11-202ENST00000427534 TRIM34Q9BYJ4 488 aa16.45■□□□□ 0.22
SPG11-202ENST00000427534 A0A0U1RQG5 324 aaPredicted RBP16.43■□□□□ 0.22
SPG11-202ENST00000427534 ATAD2BQ9ULI0 1458 aa16.43■□□□□ 0.22
SPG11-202ENST00000427534 CWC22Q9HCG8 908 aaKnown RBP16.43■□□□□ 0.22
SPG11-202ENST00000427534 NUTM2BA6NNL0 878 aaPredicted RBP16.42■□□□□ 0.22
SPG11-202ENST00000427534 NUTM2EB1AL46 878 aaPredicted RBP16.42■□□□□ 0.22
SPG11-202ENST00000427534 DHX16O60231 1041 aaKnown RBP16.42■□□□□ 0.22
SPG11-202ENST00000427534 NUTM2AQ8IVF1 878 aaPredicted RBP16.42■□□□□ 0.22
SPG11-202ENST00000427534 CTDP1Q9Y5B0 961 aaPredicted RBP16.42■□□□□ 0.22
SPG11-202ENST00000427534 RWDD1Q9H446 243 aaPredicted RBP16.42■□□□□ 0.22
SPG11-202ENST00000427534 KRI1Q8N9T8 703 aaKnown RBP16.41■□□□□ 0.22
SPG11-202ENST00000427534 CNKSR2Q8WXI2 1034 aa16.41■□□□□ 0.22
SPG11-202ENST00000427534 SLC4A3P48751 1232 aa16.41■□□□□ 0.22
SPG11-202ENST00000427534 BCL11BQ9C0K0 894 aaPredicted RBP16.41■□□□□ 0.22
SPG11-202ENST00000427534 APPP05067 770 aa16.41■□□□□ 0.22
SPG11-202ENST00000427534 AIMP1Q12904 312 aaKnown RBP16.4■□□□□ 0.22
SPG11-202ENST00000427534 TTC5Q8N0Z6 440 aa16.4■□□□□ 0.22
SPG11-202ENST00000427534 VPS37DQ86XT2 251 aa16.4■□□□□ 0.22
SPG11-202ENST00000427534 CCDC18Q5T9S5 1454 aa16.4■□□□□ 0.22
SPG11-202ENST00000427534 CALD1Q05682 793 aaKnown RBP16.4■□□□□ 0.22
SPG11-202ENST00000427534 FAM69CQ0P6D2 419 aa16.39■□□□□ 0.21
SPG11-202ENST00000427534 EIF3AQ14152 1382 aaKnown RBP16.39■□□□□ 0.21
SPG11-202ENST00000427534 COG3Q96JB2 828 aa16.39■□□□□ 0.21
SPG11-202ENST00000427534 TCEAL9Q9UHQ7 104 aa16.39■□□□□ 0.21
SPG11-202ENST00000427534 PIP4K2BP78356 416 aa16.39■□□□□ 0.21
SPG11-202ENST00000427534 RSPH4AQ5TD94 716 aa16.39■□□□□ 0.21
SPG11-202ENST00000427534 PANK3Q9H999 370 aa16.38■□□□□ 0.21
SPG11-202ENST00000427534 MCTP1Q6DN14 999 aa16.37■□□□□ 0.21
SPG11-202ENST00000427534 ANKRD45Q5TZF3 282 aa16.37■□□□□ 0.21
SPG11-202ENST00000427534 RBM19Q9Y4C8 960 aaKnown RBP16.37■□□□□ 0.21
SPG11-202ENST00000427534 HMOX1P09601 288 aa16.37■□□□□ 0.21
SPG11-202ENST00000427534 TEFQ10587 303 aa16.37■□□□□ 0.21
SPG11-202ENST00000427534 JPH4Q96JJ6 628 aa16.36■□□□□ 0.21
SPG11-202ENST00000427534 RUSC2Q8N2Y8 1516 aa16.36■□□□□ 0.21
SPG11-202ENST00000427534 SF3A1Q15459 793 aaKnown RBP16.36■□□□□ 0.21
SPG11-202ENST00000427534 CENPJQ9HC77 1338 aaPredicted RBP16.35■□□□□ 0.21
SPG11-202ENST00000427534 H3BQV1 296 aa16.34■□□□□ 0.21
SPG11-202ENST00000427534 IFFO2Q5TF58 517 aa16.34■□□□□ 0.21
SPG11-202ENST00000427534 STRN4Q9NRL3 753 aa16.34■□□□□ 0.21
SPG11-202ENST00000427534 DEKP35659 375 aaKnown RBP16.34■□□□□ 0.21
SPG11-202ENST00000427534 STK11IPQ8N1F8 1099 aa16.34■□□□□ 0.21
SPG11-202ENST00000427534 SMARCA4P51532 1647 aa16.34■□□□□ 0.21
SPG11-202ENST00000427534 C9orf78Q9NZ63 289 aaPredicted RBP16.33■□□□□ 0.2
SPG11-202ENST00000427534 DHX57Q6P158 1386 aaKnown RBP16.33■□□□□ 0.2
SPG11-202ENST00000427534 ST20-MTHFSA0A0A6YYL1 179 aa16.33■□□□□ 0.2
SPG11-202ENST00000427534 TPD52L1Q16890 204 aaPredicted RBP16.33■□□□□ 0.2
SPG11-202ENST00000427534 HMMRO75330 724 aa16.32■□□□□ 0.2
SPG11-202ENST00000427534 CCDC27Q2M243 656 aa16.31■□□□□ 0.2
SPG11-202ENST00000427534 NLRP13Q86W25 1043 aa16.31■□□□□ 0.2
SPG11-202ENST00000427534 NOL10Q9BSC4 688 aaKnown RBP16.31■□□□□ 0.2
SPG11-202ENST00000427534 ATF3P18847 181 aa16.3■□□□□ 0.2
SPG11-202ENST00000427534 KIF16BQ96L93 1317 aa16.3■□□□□ 0.2
SPG11-202ENST00000427534 CFAP44Q96MT7 982 aa16.3■□□□□ 0.2
SPG11-202ENST00000427534 GBP4Q96PP9 640 aa16.29■□□□□ 0.2
SPG11-202ENST00000427534 CHMP4CQ96CF2 233 aa16.29■□□□□ 0.2
SPG11-202ENST00000427534 PATL2C9JE40 543 aaKnown RBP16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms