RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 PRDM11Q9NQV5 511 aa3.89□□□□□ -1.79
CCDC88A-205ENST00000426576 PPM1EQ8WY54 764 aa3.88□□□□□ -1.79
CCDC88A-205ENST00000426576 SYMPKQ92797 1274 aaKnown RBP3.88□□□□□ -1.79
CCDC88A-205ENST00000426576 STAC3Q96MF2 364 aa3.88□□□□□ -1.79
CCDC88A-205ENST00000426576 POGKQ9P215 609 aa3.88□□□□□ -1.79
CCDC88A-205ENST00000426576 TPRP12270 2363 aaKnown RBP3.88□□□□□ -1.79
CCDC88A-205ENST00000426576 TRIOBPQ9H2D6 2365 aa3.88□□□□□ -1.79
CCDC88A-205ENST00000426576 MYCP01106 439 aaPredicted RBP3.88□□□□□ -1.79
CCDC88A-205ENST00000426576 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP3.88□□□□□ -1.797e-7■■□□□ 13
CCDC88A-205ENST00000426576 MKRN1Q9UHC7 482 aaKnown RBP3.88□□□□□ -1.79
CCDC88A-205ENST00000426576 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP3.88□□□□□ -1.79
CCDC88A-205ENST00000426576 ZBTB7AO95365 584 aa3.88□□□□□ -1.79
CCDC88A-205ENST00000426576 ZFP91Q96JP5 570 aaPredicted RBP3.88□□□□□ -1.79
CCDC88A-205ENST00000426576 WASHC2CQ9Y4E1 1318 aa3.87□□□□□ -1.79
CCDC88A-205ENST00000426576 SOX12O15370 315 aa3.87□□□□□ -1.79
CCDC88A-205ENST00000426576 DGKZQ13574 1117 aa3.87□□□□□ -1.79
CCDC88A-205ENST00000426576 NGDNQ8NEJ9 315 aaKnown RBP3.87□□□□□ -1.79
CCDC88A-205ENST00000426576 UPF1Q92900 1129 aaKnown RBP eCLIP3.87□□□□□ -1.79
CCDC88A-205ENST00000426576 KDM5CP41229 1560 aa3.87□□□□□ -1.79
CCDC88A-205ENST00000426576 FCHSD2O94868 740 aa3.87□□□□□ -1.79
CCDC88A-205ENST00000426576 CCDC129Q6ZRS4 1044 aa3.87□□□□□ -1.79
CCDC88A-205ENST00000426576 KRT27Q7Z3Y8 459 aa3.87□□□□□ -1.79
CCDC88A-205ENST00000426576 POLR3GLQ9BT43 218 aa3.87□□□□□ -1.79
CCDC88A-205ENST00000426576 NBPF20Q3BBV1 942 aa3.86□□□□□ -1.79
CCDC88A-205ENST00000426576 AFF2P51816 1311 aa3.86□□□□□ -1.79
CCDC88A-205ENST00000426576 C11orf95C9JLR9 678 aaPredicted RBP3.86□□□□□ -1.79
CCDC88A-205ENST00000426576 RDXP35241 583 aaKnown RBP3.86□□□□□ -1.79
CCDC88A-205ENST00000426576 NOP2P46087 812 aaKnown RBP3.86□□□□□ -1.79
CCDC88A-205ENST00000426576 MAP2K1Q02750 393 aaPredicted RBP3.86□□□□□ -1.79
CCDC88A-205ENST00000426576 ZDBF2Q9HCK1 2354 aa3.86□□□□□ -1.79
CCDC88A-205ENST00000426576 ZNF784Q8NCA9 323 aaPredicted RBP3.85□□□□□ -1.79
CCDC88A-205ENST00000426576 HSPA1AP0DMV8 641 aaKnown RBP3.85□□□□□ -1.79
CCDC88A-205ENST00000426576 HSPA1BP0DMV9 641 aaKnown RBP3.85□□□□□ -1.79
CCDC88A-205ENST00000426576 SSTR3P32745 418 aaPredicted RBP3.85□□□□□ -1.79
CCDC88A-205ENST00000426576 OTUD7BQ6GQQ9 843 aa3.85□□□□□ -1.79
CCDC88A-205ENST00000426576 SMC1BQ8NDV3 1235 aa3.85□□□□□ -1.79
CCDC88A-205ENST00000426576 ISY1Q9ULR0 285 aaKnown RBP3.85□□□□□ -1.79
CCDC88A-205ENST00000426576 DEFB132Q7Z7B7 95 aa3.85□□□□□ -1.79
CCDC88A-205ENST00000426576 JDP2Q8WYK2 163 aa3.85□□□□□ -1.79
CCDC88A-205ENST00000426576 RBM27Q9P2N5 1060 aaKnown RBP3.85□□□□□ -1.79
CCDC88A-205ENST00000426576 NCKAP5LQ9HCH0 1330 aa3.84□□□□□ -1.79
CCDC88A-205ENST00000426576 TCIRG1Q13488 830 aa3.84□□□□□ -1.79
CCDC88A-205ENST00000426576 MICALL1Q8N3F8 863 aa3.84□□□□□ -1.79
CCDC88A-205ENST00000426576 HTATIP2Q9BUP3 242 aa3.84□□□□□ -1.79
CCDC88A-205ENST00000426576 BCL2L13Q9BXK5 485 aa3.84□□□□□ -1.79
CCDC88A-205ENST00000426576 PTPRKQ15262 1439 aa3.84□□□□□ -1.79
CCDC88A-205ENST00000426576 KCNQ2O43526 872 aa3.84□□□□□ -1.8
CCDC88A-205ENST00000426576 EN1Q05925 392 aaPredicted RBP3.84□□□□□ -1.8
CCDC88A-205ENST00000426576 KDM4FA0A1W2PPD8 638 aa3.83□□□□□ -1.8
CCDC88A-205ENST00000426576 MKRN4PQ13434 485 aaPredicted RBP3.83□□□□□ -1.8
CCDC88A-205ENST00000426576 NBPF11Q86T75 865 aa3.83□□□□□ -1.8
CCDC88A-205ENST00000426576 FBXW7Q969H0 707 aa3.83□□□□□ -1.8
CCDC88A-205ENST00000426576 ESCO1Q5FWF5 840 aa3.83□□□□□ -1.8
CCDC88A-205ENST00000426576 ZEB1P37275 1124 aaPredicted RBP3.82□□□□□ -1.8
CCDC88A-205ENST00000426576 NAA30Q147X3 362 aaPredicted RBP3.82□□□□□ -1.8
CCDC88A-205ENST00000426576 AK7Q96M32 723 aa3.82□□□□□ -1.8
CCDC88A-205ENST00000426576 SPATA31D1Q6ZQQ2 1576 aa3.82□□□□□ -1.8
CCDC88A-205ENST00000426576 PTPRGP23470 1445 aa3.82□□□□□ -1.8
CCDC88A-205ENST00000426576 AKAP4Q5JQC9 854 aa3.82□□□□□ -1.8
CCDC88A-205ENST00000426576 FAM196AQ6ZSG2 479 aa3.82□□□□□ -1.8
CCDC88A-205ENST00000426576 VTI1AQ96AJ9 217 aa3.82□□□□□ -1.8
CCDC88A-205ENST00000426576 TEX14Q8IWB6 1497 aa3.82□□□□□ -1.8
CCDC88A-205ENST00000426576 CTDP1Q9Y5B0 961 aaPredicted RBP3.82□□□□□ -1.8
CCDC88A-205ENST00000426576 DHX57Q6P158 1386 aaKnown RBP3.82□□□□□ -1.8
CCDC88A-205ENST00000426576 NBPF1Q3BBV0 1214 aa3.81□□□□□ -1.8
CCDC88A-205ENST00000426576 GTPBP6O43824 516 aaPredicted RBP3.81□□□□□ -1.8
CCDC88A-205ENST00000426576 SOX10P56693 466 aa3.81□□□□□ -1.8
CCDC88A-205ENST00000426576 ACEP12821 1306 aa3.81□□□□□ -1.8
CCDC88A-205ENST00000426576 NCOR1O75376 2440 aa3.81□□□□□ -1.8
CCDC88A-205ENST00000426576 PLCD3Q8N3E9 789 aa3.81□□□□□ -1.8
CCDC88A-205ENST00000426576 MTIF3Q9H2K0 278 aaKnown RBP3.81□□□□□ -1.8
CCDC88A-205ENST00000426576 CEP290O15078 2479 aa3.81□□□□□ -1.8
CCDC88A-205ENST00000426576 TOMM70O94826 608 aa3.8□□□□□ -1.8
CCDC88A-205ENST00000426576 TOM1L2Q6ZVM7 507 aa3.8□□□□□ -1.8
CCDC88A-205ENST00000426576 ZNF335Q9H4Z2 1342 aaPredicted RBP3.8□□□□□ -1.8
CCDC88A-205ENST00000426576 IQCA1LA6NCM1 817 aa3.8□□□□□ -1.8
CCDC88A-205ENST00000426576 TRIM37O94972 964 aa3.8□□□□□ -1.8
CCDC88A-205ENST00000426576 SECISBP2LQ93073 1101 aaKnown RBP3.8□□□□□ -1.8
CCDC88A-205ENST00000426576 CHD8Q9HCK8 2581 aa3.8□□□□□ -1.8
CCDC88A-205ENST00000426576 AFAP1Q8N556 730 aa3.8□□□□□ -1.8
CCDC88A-205ENST00000426576 RNF181Q9P0P0 153 aa3.8□□□□□ -1.8
CCDC88A-205ENST00000426576 TDRD9Q8NDG6 1382 aaKnown RBP3.79□□□□□ -1.8
CCDC88A-205ENST00000426576 JCADQ9P266 1359 aa3.79□□□□□ -1.8
CCDC88A-205ENST00000426576 KDM4AO75164 1064 aa3.79□□□□□ -1.8
CCDC88A-205ENST00000426576 ITGAEP38570 1179 aa3.79□□□□□ -1.8
CCDC88A-205ENST00000426576 ZNF622Q969S3 477 aaKnown RBP eCLIP3.79□□□□□ -1.82e-7■■□□□ 14.2
CCDC88A-205ENST00000426576 GAS2L1Q99501 681 aaPredicted RBP3.79□□□□□ -1.8
CCDC88A-205ENST00000426576 SPTBN2O15020 2390 aa3.79□□□□□ -1.8
CCDC88A-205ENST00000426576 CEP164Q9UPV0 1460 aa3.79□□□□□ -1.8
CCDC88A-205ENST00000426576 KIF3BO15066 747 aa3.79□□□□□ -1.8
CCDC88A-205ENST00000426576 IGFBP4P22692 258 aa3.79□□□□□ -1.8
CCDC88A-205ENST00000426576 MNX1P50219 401 aaPredicted RBP3.79□□□□□ -1.8
CCDC88A-205ENST00000426576 AAK1Q2M2I8 961 aa3.79□□□□□ -1.8
CCDC88A-205ENST00000426576 PRPF38BQ5VTL8 546 aaKnown RBP3.79□□□□□ -1.8
CCDC88A-205ENST00000426576 GJA3Q9Y6H8 435 aa3.79□□□□□ -1.8
CCDC88A-205ENST00000426576 PDE4DIPQ5VU43 2346 aa3.79□□□□□ -1.8
CCDC88A-205ENST00000426576 KANK1Q14678 1352 aa3.79□□□□□ -1.8
CCDC88A-205ENST00000426576 CADPSQ9ULU8 1353 aa3.79□□□□□ -1.8
CCDC88A-205ENST00000426576 IGFLR1Q9H665 355 aa3.79□□□□□ -1.8
CCDC88A-205ENST00000426576 PARP3Q9Y6F1 533 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms