RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 ZMYM4Q5VZL5 1548 aa13.53□□□□□ -0.24
HMGB4-201ENST00000425537 ARHGEF40Q8TER5 1519 aa13.53□□□□□ -0.24
HMGB4-201ENST00000425537 KDM5CP41229 1560 aa13.53□□□□□ -0.24
HMGB4-201ENST00000425537 HECW2Q9P2P5 1572 aa13.53□□□□□ -0.24
HMGB4-201ENST00000425537 ABCA6Q8N139 1617 aa13.53□□□□□ -0.24
HMGB4-201ENST00000425537 SPAG9O60271 1321 aaKnown RBP13.52□□□□□ -0.25
HMGB4-201ENST00000425537 NUP155O75694 1391 aa13.52□□□□□ -0.25
HMGB4-201ENST00000425537 ANKRD30BQ9BXX2 1392 aa13.51□□□□□ -0.25
HMGB4-201ENST00000425537 KIDINS220Q9ULH0 1771 aa13.5□□□□□ -0.25
HMGB4-201ENST00000425537 UNC13BO14795 1591 aa13.5□□□□□ -0.25
HMGB4-201ENST00000425537 RPRD2Q5VT52 1461 aaKnown RBP13.5□□□□□ -0.25
HMGB4-201ENST00000425537 DIP2CQ9Y2E4 1556 aa13.49□□□□□ -0.25
HMGB4-201ENST00000425537 INO80Q9ULG1 1556 aaPredicted RBP13.49□□□□□ -0.25
HMGB4-201ENST00000425537 ATP7AQ04656 1500 aa13.49□□□□□ -0.25
HMGB4-201ENST00000425537 ARID4BQ4LE39 1312 aaPredicted RBP13.47□□□□□ -0.25
HMGB4-201ENST00000425537 PKD2Q13563 968 aa13.47□□□□□ -0.25
HMGB4-201ENST00000425537 MLECQ14165 292 aa13.46□□□□□ -0.25
HMGB4-201ENST00000425537 IQGAP3Q86VI3 1631 aa13.45□□□□□ -0.26
HMGB4-201ENST00000425537 FAM135AQ9P2D6 1515 aa13.44□□□□□ -0.26
HMGB4-201ENST00000425537 MAGI2Q86UL8 1455 aa13.43□□□□□ -0.26
HMGB4-201ENST00000425537 MLH3Q9UHC1 1453 aa13.43□□□□□ -0.26
HMGB4-201ENST00000425537 EIF2AK4Q9P2K8 1649 aaKnown RBP13.43□□□□□ -0.26
HMGB4-201ENST00000425537 KANK1Q14678 1352 aa13.43□□□□□ -0.26
HMGB4-201ENST00000425537 ATP10AO60312 1499 aa13.42□□□□□ -0.26
HMGB4-201ENST00000425537 PPP6R1Q9UPN7 881 aa13.41□□□□□ -0.26
HMGB4-201ENST00000425537 ADRA2BP18089 450 aa13.39□□□□□ -0.27
HMGB4-201ENST00000425537 PIAS4Q8N2W9 510 aaPredicted RBP13.39□□□□□ -0.27
HMGB4-201ENST00000425537 L3MBTL2Q969R5 705 aa13.39□□□□□ -0.27
HMGB4-201ENST00000425537 BCORL1Q5H9F3 1711 aa13.39□□□□□ -0.27
HMGB4-201ENST00000425537 A2MP01023 1474 aa13.38□□□□□ -0.27
HMGB4-201ENST00000425537 DHX29Q7Z478 1369 aaKnown RBP13.38□□□□□ -0.27
HMGB4-201ENST00000425537 KDM4FA0A1W2PPD8 638 aa13.38□□□□□ -0.27
HMGB4-201ENST00000425537 DEPDC5O75140 1603 aa13.38□□□□□ -0.27
HMGB4-201ENST00000425537 MADDQ8WXG6 1647 aa13.38□□□□□ -0.27
HMGB4-201ENST00000425537 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.37□□□□□ -0.27
HMGB4-201ENST00000425537 RIMS1Q86UR5 1692 aaKnown RBP13.37□□□□□ -0.27
HMGB4-201ENST00000425537 CCDC144AA2RUR9 1427 aa13.36□□□□□ -0.27
HMGB4-201ENST00000425537 EIF4G2P78344 907 aaKnown RBP eCLIP13.34□□□□□ -0.27
HMGB4-201ENST00000425537 FER1L4A9Z1Z3 1794 aa13.34□□□□□ -0.27
HMGB4-201ENST00000425537 TET3O43151 1660 aa13.34□□□□□ -0.27
HMGB4-201ENST00000425537 ADAMTSL3P82987 1691 aa13.34□□□□□ -0.27
HMGB4-201ENST00000425537 REREQ9P2R6 1566 aa13.33□□□□□ -0.28
HMGB4-201ENST00000425537 MSH5O43196 834 aa13.33□□□□□ -0.28
HMGB4-201ENST00000425537 KIF3BO15066 747 aa13.32□□□□□ -0.28
HMGB4-201ENST00000425537 GGT6Q6P531 493 aa13.32□□□□□ -0.28
HMGB4-201ENST00000425537 PRDM15P57071 1507 aaPredicted RBP13.32□□□□□ -0.28
HMGB4-201ENST00000425537 VWDEQ8N2E2 1590 aa13.31□□□□□ -0.28
HMGB4-201ENST00000425537 UHRF1BP1Q6BDS2 1440 aa13.3□□□□□ -0.28
HMGB4-201ENST00000425537 STAC3Q96MF2 364 aa13.3□□□□□ -0.28
HMGB4-201ENST00000425537 RNF17Q9BXT8 1623 aaKnown RBP13.3□□□□□ -0.28
HMGB4-201ENST00000425537 CLTCQ00610 1675 aaKnown RBP13.3□□□□□ -0.28
HMGB4-201ENST00000425537 AGLP35573 1532 aa13.29□□□□□ -0.28
HMGB4-201ENST00000425537 LMTK2Q8IWU2 1503 aa13.28□□□□□ -0.28
HMGB4-201ENST00000425537 CEP152O94986 1710 aa13.27□□□□□ -0.28
HMGB4-201ENST00000425537 CEBPAP49715 358 aaPredicted RBP13.27□□□□□ -0.29
HMGB4-201ENST00000425537 TRPM2O94759 1503 aa13.27□□□□□ -0.29
HMGB4-201ENST00000425537 MROH1Q8NDA8 1641 aa13.27□□□□□ -0.29
HMGB4-201ENST00000425537 E9PCH4 1651 aa13.27□□□□□ -0.29
HMGB4-201ENST00000425537 SPHKAPQ2M3C7 1700 aa13.27□□□□□ -0.29
HMGB4-201ENST00000425537 PTPRMP28827 1452 aa13.25□□□□□ -0.29
HMGB4-201ENST00000425537 RALGAPBQ86X10 1494 aa13.25□□□□□ -0.29
HMGB4-201ENST00000425537 PTPRTO14522 1441 aa13.25□□□□□ -0.29
HMGB4-201ENST00000425537 HSPA5P11021 654 aaKnown RBP13.25□□□□□ -0.29
HMGB4-201ENST00000425537 MIER1Q8N108 512 aa13.25□□□□□ -0.29
HMGB4-201ENST00000425537 PLA2R1Q13018 1463 aa13.24□□□□□ -0.29
HMGB4-201ENST00000425537 CENPBP07199 599 aaPredicted RBP13.24□□□□□ -0.29
HMGB4-201ENST00000425537 NBPF8Q3BBV2 869 aa13.24□□□□□ -0.29
HMGB4-201ENST00000425537 DCAF11Q8TEB1 546 aa13.24□□□□□ -0.29
HMGB4-201ENST00000425537 NEURL4Q96JN8 1562 aa13.24□□□□□ -0.29
HMGB4-201ENST00000425537 EFCAB6Q5THR3 1501 aa13.23□□□□□ -0.29
HMGB4-201ENST00000425537 ESF1Q9H501 851 aaKnown RBP13.23□□□□□ -0.29
HMGB4-201ENST00000425537 C3P01024 1663 aa13.23□□□□□ -0.29
HMGB4-201ENST00000425537 ZNF326Q5BKZ1 582 aaKnown RBP13.22□□□□□ -0.29
HMGB4-201ENST00000425537 ZC3H13Q5T200 1668 aaKnown RBP13.21□□□□□ -0.29
HMGB4-201ENST00000425537 DDX10Q13206 875 aaKnown RBP13.21□□□□□ -0.29
HMGB4-201ENST00000425537 POLR1AO95602 1720 aaPredicted RBP13.21□□□□□ -0.3
HMGB4-201ENST00000425537 ABCC3O15438 1527 aa13.2□□□□□ -0.3
HMGB4-201ENST00000425537 WASHC2CQ9Y4E1 1318 aa13.19□□□□□ -0.3
HMGB4-201ENST00000425537 KDM2AQ9Y2K7 1162 aa13.19□□□□□ -0.3
HMGB4-201ENST00000425537 LAMC1P11047 1609 aa13.19□□□□□ -0.3
HMGB4-201ENST00000425537 CAMSAP1Q5T5Y3 1602 aa13.19□□□□□ -0.3
HMGB4-201ENST00000425537 CFAP65Q6ZU64 1925 aaKnown RBP13.18□□□□□ -0.3
HMGB4-201ENST00000425537 ANP32CO43423 234 aa13.18□□□□□ -0.3
HMGB4-201ENST00000425537 CARD11Q9BXL7 1154 aa13.18□□□□□ -0.3
HMGB4-201ENST00000425537 SPATA31E1Q6ZUB1 1445 aa13.18□□□□□ -0.3
HMGB4-201ENST00000425537 PRAG1Q86YV5 1406 aa13.18□□□□□ -0.3
HMGB4-201ENST00000425537 USP47Q96K76 1375 aa13.18□□□□□ -0.3
HMGB4-201ENST00000425537 MROH2AA6NES4 1674 aa13.18□□□□□ -0.3
HMGB4-201ENST00000425537 KIF1BO60333 1816 aa13.18□□□□□ -0.3
HMGB4-201ENST00000425537 TRPM1Q7Z4N2 1603 aa13.17□□□□□ -0.3
HMGB4-201ENST00000425537 RGL3Q3MIN7 710 aa13.17□□□□□ -0.3
HMGB4-201ENST00000425537 HIRIP3Q9BW71 556 aaPredicted RBP13.17□□□□□ -0.3
HMGB4-201ENST00000425537 ROCK2O75116 1388 aaKnown RBP13.17□□□□□ -0.3
HMGB4-201ENST00000425537 CLTCL1P53675 1640 aa13.17□□□□□ -0.3
HMGB4-201ENST00000425537 CNTLNQ9NXG0 1405 aa13.16□□□□□ -0.3
HMGB4-201ENST00000425537 FBXO31Q5XUX0 539 aaPredicted RBP13.16□□□□□ -0.3
HMGB4-201ENST00000425537 ZMYM3Q14202 1370 aa13.16□□□□□ -0.3
HMGB4-201ENST00000425537 CCDC7Q96M83 1385 aa13.15□□□□□ -0.3
HMGB4-201ENST00000425537 ARHGAP31Q2M1Z3 1444 aa13.14□□□□□ -0.31
HMGB4-201ENST00000425537 GPRASP1Q5JY77 1395 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms