RNA–Protein interactions for RNA: ENST00000422704.6

SEMA4D-208, Transcript of semaphorin 4D, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SEMA4D, Length 4,382 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-208ENST00000422704 U2AF1Q01081 240 aaKnown RBP eCLIP13.63□□□□□ -0.23
SEMA4D-208ENST00000422704 DHX57Q6P158 1386 aaKnown RBP13.63□□□□□ -0.23
SEMA4D-208ENST00000422704 SLC4A3P48751 1232 aa13.63□□□□□ -0.23
SEMA4D-208ENST00000422704 HAP1P54257 671 aaPredicted RBP13.62□□□□□ -0.23
SEMA4D-208ENST00000422704 TIMELESSQ9UNS1 1208 aa13.62□□□□□ -0.23
SEMA4D-208ENST00000422704 NUP155O75694 1391 aa13.62□□□□□ -0.23
SEMA4D-208ENST00000422704 ERICH6BQ5W0A0 696 aa13.62□□□□□ -0.23
SEMA4D-208ENST00000422704 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.61□□□□□ -0.23
SEMA4D-208ENST00000422704 HNRNPMP52272 730 aaKnown RBP eCLIP13.61□□□□□ -0.23
SEMA4D-208ENST00000422704 TULP1O00294 542 aaPredicted RBP13.61□□□□□ -0.23
SEMA4D-208ENST00000422704 NAP1L2Q9ULW6 460 aaPredicted RBP13.6□□□□□ -0.23
SEMA4D-208ENST00000422704 NUTM2FA1L443 756 aa13.59□□□□□ -0.23
SEMA4D-208ENST00000422704 BCL2L13Q9BXK5 485 aa13.59□□□□□ -0.23
SEMA4D-208ENST00000422704 MAGI3Q5TCQ9 1506 aa13.59□□□□□ -0.23
SEMA4D-208ENST00000422704 OS9Q13438 667 aaPredicted RBP13.59□□□□□ -0.23
SEMA4D-208ENST00000422704 TCOF1Q13428 1488 aaKnown RBP13.59□□□□□ -0.23
SEMA4D-208ENST00000422704 ST20-MTHFSA0A0A6YYL1 179 aa13.58□□□□□ -0.23
SEMA4D-208ENST00000422704 RRP7AQ9Y3A4 280 aaKnown RBP13.58□□□□□ -0.23
SEMA4D-208ENST00000422704 ARID3AQ99856 593 aa13.58□□□□□ -0.24
SEMA4D-208ENST00000422704 MIA2Q96PC5 1412 aa13.57□□□□□ -0.24
SEMA4D-208ENST00000422704 PTPN23Q9H3S7 1636 aa13.57□□□□□ -0.24
SEMA4D-208ENST00000422704 NUP153P49790 1475 aaKnown RBP13.57□□□□□ -0.24
SEMA4D-208ENST00000422704 CDK13Q14004 1512 aaKnown RBP13.57□□□□□ -0.24
SEMA4D-208ENST00000422704 KCNJ4P48050 445 aa13.57□□□□□ -0.24
SEMA4D-208ENST00000422704 FGD1P98174 961 aa13.56□□□□□ -0.24
SEMA4D-208ENST00000422704 JPH4Q96JJ6 628 aa13.55□□□□□ -0.24
SEMA4D-208ENST00000422704 FOXD4L1Q9NU39 408 aa13.55□□□□□ -0.24
SEMA4D-208ENST00000422704 ROCK2O75116 1388 aaKnown RBP13.54□□□□□ -0.24
SEMA4D-208ENST00000422704 ELL2O00472 640 aaPredicted RBP13.54□□□□□ -0.24
SEMA4D-208ENST00000422704 CASC1Q6TDU7 716 aa13.54□□□□□ -0.24
SEMA4D-208ENST00000422704 KTN1Q86UP2 1357 aaKnown RBP13.54□□□□□ -0.24
SEMA4D-208ENST00000422704 ITPRIPQ8IWB1 547 aa13.53□□□□□ -0.24
SEMA4D-208ENST00000422704 CHD1O14646 1710 aa13.53□□□□□ -0.24
SEMA4D-208ENST00000422704 KIF3BO15066 747 aa13.53□□□□□ -0.24
SEMA4D-208ENST00000422704 AMER1Q5JTC6 1135 aaPredicted RBP13.53□□□□□ -0.24
SEMA4D-208ENST00000422704 HSCBQ8IWL3 235 aa13.52□□□□□ -0.24
SEMA4D-208ENST00000422704 ABCA8O94911 1581 aa13.52□□□□□ -0.25
SEMA4D-208ENST00000422704 ADCY10Q96PN6 1610 aa13.51□□□□□ -0.25
SEMA4D-208ENST00000422704 MFAP1P55081 439 aaKnown RBP13.51□□□□□ -0.25
SEMA4D-208ENST00000422704 HFM1A2PYH4 1435 aa13.51□□□□□ -0.25
SEMA4D-208ENST00000422704 ZRSR1Q15695 479 aaKnown RBP13.51□□□□□ -0.25
SEMA4D-208ENST00000422704 AKNAQ7Z591 1439 aa13.51□□□□□ -0.25
SEMA4D-208ENST00000422704 EXOC6Q8TAG9 804 aa13.5□□□□□ -0.25
SEMA4D-208ENST00000422704 SHROOM2Q13796 1616 aa13.5□□□□□ -0.25
SEMA4D-208ENST00000422704 TRAK1Q9UPV9 953 aa13.5□□□□□ -0.25
SEMA4D-208ENST00000422704 TROQ12816 1431 aaPredicted RBP13.5□□□□□ -0.25
SEMA4D-208ENST00000422704 PRKRIP1Q9H875 184 aaPredicted RBP13.5□□□□□ -0.25
SEMA4D-208ENST00000422704 ITSN2Q9NZM3 1697 aa13.49□□□□□ -0.25
SEMA4D-208ENST00000422704 NOL8Q76FK4 1167 aaKnown RBP13.48□□□□□ -0.25
SEMA4D-208ENST00000422704 PAK3O75914 559 aaPredicted RBP13.48□□□□□ -0.25
SEMA4D-208ENST00000422704 GOLGA2Q08379 1002 aa13.48□□□□□ -0.25
SEMA4D-208ENST00000422704 IPO9Q96P70 1041 aaKnown RBP13.48□□□□□ -0.25
SEMA4D-208ENST00000422704 PLB1Q6P1J6 1458 aa13.48□□□□□ -0.25
SEMA4D-208ENST00000422704 NLRP13Q86W25 1043 aa13.48□□□□□ -0.25
SEMA4D-208ENST00000422704 PANK3Q9H999 370 aa13.48□□□□□ -0.25
SEMA4D-208ENST00000422704 ZNF330Q9Y3S2 320 aaPredicted RBP13.47□□□□□ -0.25
SEMA4D-208ENST00000422704 PRG4Q92954 1404 aaPredicted RBP13.47□□□□□ -0.25
SEMA4D-208ENST00000422704 SMC4Q9NTJ3 1288 aa13.47□□□□□ -0.25
SEMA4D-208ENST00000422704 MAPKBP1O60336 1514 aa13.46□□□□□ -0.25
SEMA4D-208ENST00000422704 TCERG1O14776 1098 aaKnown RBP13.46□□□□□ -0.25
SEMA4D-208ENST00000422704 GCC2Q8IWJ2 1684 aa13.46□□□□□ -0.25
SEMA4D-208ENST00000422704 RALBP1Q15311 655 aa13.45□□□□□ -0.26
SEMA4D-208ENST00000422704 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.45□□□□□ -0.26
SEMA4D-208ENST00000422704 FOXD4L5Q5VV16 416 aaPredicted RBP13.45□□□□□ -0.26
SEMA4D-208ENST00000422704 SLC4A10Q6U841 1118 aa13.45□□□□□ -0.26
SEMA4D-208ENST00000422704 FOXD4L4Q8WXT5 416 aaPredicted RBP13.45□□□□□ -0.26
SEMA4D-208ENST00000422704 MS4A1P11836 297 aa13.44□□□□□ -0.26
SEMA4D-208ENST00000422704 TRHP20396 242 aaPredicted RBP13.43□□□□□ -0.26
SEMA4D-208ENST00000422704 PTPRKQ15262 1439 aa13.43□□□□□ -0.26
SEMA4D-208ENST00000422704 GOLGA6L4A6NEF3 574 aa13.43□□□□□ -0.26
SEMA4D-208ENST00000422704 PTPRGP23470 1445 aa13.43□□□□□ -0.26
SEMA4D-208ENST00000422704 NAIPQ13075 1403 aa13.43□□□□□ -0.26
SEMA4D-208ENST00000422704 ZNF644Q9H582 1327 aaPredicted RBP13.43□□□□□ -0.26
SEMA4D-208ENST00000422704 RTF1Q92541 710 aaKnown RBP13.43□□□□□ -0.26
SEMA4D-208ENST00000422704 UACAQ9BZF9 1416 aa13.43□□□□□ -0.26
SEMA4D-208ENST00000422704 KIF14Q15058 1648 aa13.42□□□□□ -0.26
SEMA4D-208ENST00000422704 FOXD4L6Q3SYB3 417 aaPredicted RBP13.42□□□□□ -0.26
SEMA4D-208ENST00000422704 FOXD4L3Q6VB84 417 aaPredicted RBP13.42□□□□□ -0.26
SEMA4D-208ENST00000422704 LTV1Q96GA3 475 aaPredicted RBP13.42□□□□□ -0.26
SEMA4D-208ENST00000422704 DNMT1P26358 1616 aaKnown RBP13.42□□□□□ -0.26
SEMA4D-208ENST00000422704 COG6Q9Y2V7 657 aa13.42□□□□□ -0.26
SEMA4D-208ENST00000422704 APAF1O14727 1248 aa13.42□□□□□ -0.26
SEMA4D-208ENST00000422704 ROCK1Q13464 1354 aa13.42□□□□□ -0.26
SEMA4D-208ENST00000422704 PDE4AP27815 886 aa13.41□□□□□ -0.26
SEMA4D-208ENST00000422704 RWDD1Q9H446 243 aaPredicted RBP13.41□□□□□ -0.26
SEMA4D-208ENST00000422704 EFCAB2Q5VUJ9 269 aa13.41□□□□□ -0.26
SEMA4D-208ENST00000422704 CLASP1Q7Z460 1538 aa13.41□□□□□ -0.26
SEMA4D-208ENST00000422704 CRBNQ96SW2 442 aa13.4□□□□□ -0.26
SEMA4D-208ENST00000422704 NPHP1O15259 732 aa13.4□□□□□ -0.26
SEMA4D-208ENST00000422704 ATP10BO94823 1461 aa13.39□□□□□ -0.27
SEMA4D-208ENST00000422704 CDK11BP21127 795 aaKnown RBP13.39□□□□□ -0.27
SEMA4D-208ENST00000422704 KANK1Q14678 1352 aa13.39□□□□□ -0.27
SEMA4D-208ENST00000422704 DAPK1P53355 1430 aa13.39□□□□□ -0.27
SEMA4D-208ENST00000422704 IPO8O15397 1037 aaKnown RBP13.39□□□□□ -0.27
SEMA4D-208ENST00000422704 HDGFL2Q7Z4V5 671 aaPredicted RBP13.39□□□□□ -0.27
SEMA4D-208ENST00000422704 ANKRD30AQ9BXX3 1397 aa13.38□□□□□ -0.27
SEMA4D-208ENST00000422704 CENPJQ9HC77 1338 aaPredicted RBP13.38□□□□□ -0.27
SEMA4D-208ENST00000422704 GPATCH8Q9UKJ3 1502 aaKnown RBP13.37□□□□□ -0.27
SEMA4D-208ENST00000422704 MSNP26038 577 aaKnown RBP13.37□□□□□ -0.27
SEMA4D-208ENST00000422704 PNNQ9H307 717 aaKnown RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms