RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 RALBP1Q15311 655 aa28.31■■■□□ 2.12
USP48-205ENST00000421625 RAPGEF6Q8TEU7 1601 aa28.3■■■□□ 2.12
USP48-205ENST00000421625 PRG4Q92954 1404 aaPredicted RBP28.3■■■□□ 2.12
USP48-205ENST00000421625 KDM2AQ9Y2K7 1162 aa28.28■■■□□ 2.12
USP48-205ENST00000421625 ADGRL2O95490 1459 aa28.26■■■□□ 2.11
USP48-205ENST00000421625 KTN1Q86UP2 1357 aaKnown RBP28.25■■■□□ 2.11
USP48-205ENST00000421625 RTN4Q9NQC3 1192 aaKnown RBP28.25■■■□□ 2.11
USP48-205ENST00000421625 MS4A1P11836 297 aa28.24■■■□□ 2.11
USP48-205ENST00000421625 CDCA7LQ96GN5 454 aa28.24■■■□□ 2.11
USP48-205ENST00000421625 E9PCH4 1651 aa28.24■■■□□ 2.11
USP48-205ENST00000421625 SKAP1Q86WV1 359 aa28.24■■■□□ 2.11
USP48-205ENST00000421625 CROCC2H7BZ55 1655 aa28.23■■■□□ 2.11
USP48-205ENST00000421625 GPATCH8Q9UKJ3 1502 aaKnown RBP28.23■■■□□ 2.11
USP48-205ENST00000421625 ANKRD50Q9ULJ7 1429 aa28.22■■■□□ 2.11
USP48-205ENST00000421625 TROQ12816 1431 aaPredicted RBP28.22■■■□□ 2.11
USP48-205ENST00000421625 ANKRD30AQ9BXX3 1397 aa28.22■■■□□ 2.11
USP48-205ENST00000421625 PLIN1O60240 522 aa28.21■■■□□ 2.11
USP48-205ENST00000421625 USP35Q9P2H5 1018 aa28.2■■■□□ 2.11
USP48-205ENST00000421625 ITSN2Q9NZM3 1697 aa28.2■■■□□ 2.1
USP48-205ENST00000421625 ARHGEF12Q9NZN5 1544 aa28.19■■■□□ 2.1
USP48-205ENST00000421625 NUP155O75694 1391 aa28.19■■■□□ 2.1
USP48-205ENST00000421625 NLRP13Q86W25 1043 aa28.19■■■□□ 2.1
USP48-205ENST00000421625 PDE3BQ13370 1112 aa28.19■■■□□ 2.1
USP48-205ENST00000421625 DCAF11Q8TEB1 546 aa28.18■■■□□ 2.1
USP48-205ENST00000421625 PARD3Q8TEW0 1356 aa28.16■■■□□ 2.1
USP48-205ENST00000421625 CHD1O14646 1710 aa28.16■■■□□ 2.1
USP48-205ENST00000421625 PPM1GO15355 546 aaPredicted RBP28.14■■■□□ 2.1
USP48-205ENST00000421625 CRBNQ96SW2 442 aa28.13■■■□□ 2.09
USP48-205ENST00000421625 WASHC2CQ9Y4E1 1318 aa28.11■■■□□ 2.09
USP48-205ENST00000421625 PTPRGP23470 1445 aa28.1■■■□□ 2.09
USP48-205ENST00000421625 PLEKHD1A6NEE1 506 aa28.07■■■□□ 2.08
USP48-205ENST00000421625 PER1O15534 1290 aaPredicted RBP28.06■■■□□ 2.08
USP48-205ENST00000421625 ADCY10Q96PN6 1610 aa28.05■■■□□ 2.08
USP48-205ENST00000421625 CC2D1BQ5T0F9 858 aaKnown RBP28.05■■■□□ 2.08
USP48-205ENST00000421625 ATP10BO94823 1461 aa28.04■■■□□ 2.08
USP48-205ENST00000421625 C9orf84Q5VXU9 1444 aa28.04■■■□□ 2.08
USP48-205ENST00000421625 DDRGK1Q96HY6 314 aa28.04■■■□□ 2.08
USP48-205ENST00000421625 C20orf194Q5TEA3 1177 aa28.02■■■□□ 2.08
USP48-205ENST00000421625 ABCA8O94911 1581 aa28.02■■■□□ 2.08
USP48-205ENST00000421625 CDC42BPAQ5VT25 1732 aa28.01■■■□□ 2.08
USP48-205ENST00000421625 SLC4A3P48751 1232 aa28.01■■■□□ 2.08
USP48-205ENST00000421625 KDM5DQ9BY66 1539 aa28.01■■■□□ 2.07
USP48-205ENST00000421625 BLMP54132 1417 aaPredicted RBP28■■■□□ 2.07
USP48-205ENST00000421625 NBPF1Q3BBV0 1214 aa27.99■■■□□ 2.07
USP48-205ENST00000421625 ERCC6L2Q5T890 1561 aa27.99■■■□□ 2.07
USP48-205ENST00000421625 TRPM1Q7Z4N2 1603 aa27.97■■■□□ 2.07
USP48-205ENST00000421625 NFKBIBQ15653 356 aa27.96■■■□□ 2.07
USP48-205ENST00000421625 BRPF3Q9ULD4 1205 aa27.96■■■□□ 2.07
USP48-205ENST00000421625 PRAG1Q86YV5 1406 aa27.96■■■□□ 2.07
USP48-205ENST00000421625 SHANK2Q9UPX8 1470 aa27.96■■■□□ 2.07
USP48-205ENST00000421625 GSE1Q14687 1217 aa27.94■■■□□ 2.06
USP48-205ENST00000421625 DISP3Q9P2K9 1392 aa27.94■■■□□ 2.06
USP48-205ENST00000421625 KDM2BQ8NHM5 1336 aa27.93■■■□□ 2.06
USP48-205ENST00000421625 RGL3Q3MIN7 710 aa27.92■■■□□ 2.06
USP48-205ENST00000421625 ZBTB4Q9P1Z0 1013 aaPredicted RBP27.92■■■□□ 2.06
USP48-205ENST00000421625 TSPY4P0CV99 314 aa27.91■■■□□ 2.06
USP48-205ENST00000421625 TSPY10P0CW01 314 aa27.91■■■□□ 2.06
USP48-205ENST00000421625 PANK3Q9H999 370 aa27.91■■■□□ 2.06
USP48-205ENST00000421625 COL17A1Q9UMD9 1497 aaPredicted RBP27.91■■■□□ 2.06
USP48-205ENST00000421625 ZMYM4Q5VZL5 1548 aa27.91■■■□□ 2.06
USP48-205ENST00000421625 INSRP06213 1382 aa27.89■■■□□ 2.06
USP48-205ENST00000421625 HNRNPMP52272 730 aaKnown RBP eCLIP27.88■■■□□ 2.056e-7■■■■□ 25
USP48-205ENST00000421625 TESK2Q96S53 571 aa27.87■■■□□ 2.05
USP48-205ENST00000421625 FRAT1Q92837 279 aaPredicted RBP27.86■■■□□ 2.05
USP48-205ENST00000421625 ABCC10Q5T3U5 1492 aa27.86■■■□□ 2.05
USP48-205ENST00000421625 PLEKHH2Q8IVE3 1493 aa27.86■■■□□ 2.05
USP48-205ENST00000421625 ADAMTS8Q9UP79 889 aa27.86■■■□□ 2.05
USP48-205ENST00000421625 FAM135AQ9P2D6 1515 aa27.86■■■□□ 2.05
USP48-205ENST00000421625 CCDC144AA2RUR9 1427 aa27.84■■■□□ 2.05
USP48-205ENST00000421625 DAXXQ9UER7 740 aaPredicted RBP27.84■■■□□ 2.05
USP48-205ENST00000421625 C8orf34Q49A92 452 aa27.84■■■□□ 2.05
USP48-205ENST00000421625 CENPQQ7L2Z9 268 aaPredicted RBP27.84■■■□□ 2.05
USP48-205ENST00000421625 GPRASP1Q5JY77 1395 aa27.83■■■□□ 2.05
USP48-205ENST00000421625 SHROOM2Q13796 1616 aa27.82■■■□□ 2.04
USP48-205ENST00000421625 FAM161AQ3B820 660 aa27.81■■■□□ 2.04
USP48-205ENST00000421625 ERBINQ96RT1 1412 aa27.81■■■□□ 2.04
USP48-205ENST00000421625 PLEKHH1Q9ULM0 1364 aa27.81■■■□□ 2.04
USP48-205ENST00000421625 A2MP01023 1474 aa27.8■■■□□ 2.04
USP48-205ENST00000421625 PRDM15P57071 1507 aaPredicted RBP27.79■■■□□ 2.04
USP48-205ENST00000421625 DUSP27Q5VZP5 1158 aa27.79■■■□□ 2.04
USP48-205ENST00000421625 PLA2R1Q13018 1463 aa27.76■■■□□ 2.03
USP48-205ENST00000421625 RGS3P49796 1198 aa27.75■■■□□ 2.03
USP48-205ENST00000421625 TMF1P82094 1093 aa27.74■■■□□ 2.03
USP48-205ENST00000421625 FRAT2O75474 233 aaPredicted RBP27.73■■■□□ 2.03
USP48-205ENST00000421625 LAMC1P11047 1609 aa27.73■■■□□ 2.03
USP48-205ENST00000421625 ARHGEF5Q12774 1597 aa27.72■■■□□ 2.03
USP48-205ENST00000421625 CLASP1Q7Z460 1538 aa27.71■■■□□ 2.03
USP48-205ENST00000421625 WDR43Q15061 677 aaKnown RBP eCLIP27.7■■■□□ 2.02
USP48-205ENST00000421625 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.7■■■□□ 2.024e-8■■■□□ 14.6
USP48-205ENST00000421625 ZNF521Q96K83 1311 aa27.69■■■□□ 2.02
USP48-205ENST00000421625 PPP2R1AP30153 589 aa27.69■■■□□ 2.02
USP48-205ENST00000421625 MYO5CQ9NQX4 1742 aa27.68■■■□□ 2.02
USP48-205ENST00000421625 GOLGA2Q08379 1002 aa27.68■■■□□ 2.02
USP48-205ENST00000421625 CCDC141Q6ZP82 1450 aa27.67■■■□□ 2.02
USP48-205ENST00000421625 MAGI2Q86UL8 1455 aa27.67■■■□□ 2.02
USP48-205ENST00000421625 ABCC2Q92887 1545 aa27.66■■■□□ 2.02
USP48-205ENST00000421625 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.65■■■□□ 2.02
USP48-205ENST00000421625 SAMD9LQ8IVG5 1584 aa27.64■■■□□ 2.02
USP48-205ENST00000421625 WDR7Q9Y4E6 1490 aa27.63■■■□□ 2.01
USP48-205ENST00000421625 EIF2AK4Q9P2K8 1649 aaKnown RBP27.62■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms