RNA–Protein interactions for RNA: ENST00000420148.5

PBRM1-210, Transcript of polybromo 1, human

TSL 3

Gene PBRM1, Length 783 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PBRM1-210	ENST00000420148	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	41.02	■■■■■ 4.16
PBRM1-210	ENST00000420148	MAST1	Q9Y2H9	1570 aa		41.01	■■■■■ 4.16
PBRM1-210	ENST00000420148	KDM5D	Q9BY66	1539 aa		40.99	■■■■■ 4.15
PBRM1-210	ENST00000420148	PLA2R1	Q13018	1463 aa		40.99	■■■■■ 4.15
PBRM1-210	ENST00000420148	PZP	P20742	1482 aa		40.93	■■■■■ 4.14
PBRM1-210	ENST00000420148	LTBP4	Q8N2S1	1624 aa		40.93	■■■■■ 4.14
PBRM1-210	ENST00000420148	A2ML1	A8K2U0	1454 aa		40.91	■■■■■ 4.14
PBRM1-210	ENST00000420148	TCOF1	Q13428	1488 aa	Known RBP	40.91	■■■■■ 4.14
PBRM1-210	ENST00000420148	WASHC2C	Q9Y4E1	1318 aa		40.91	■■■■■ 4.14
PBRM1-210	ENST00000420148	PKD2	Q13563	968 aa		40.9	■■■■■ 4.14
PBRM1-210	ENST00000420148	NCKAP5L	Q9HCH0	1330 aa		40.9	■■■■■ 4.14
PBRM1-210	ENST00000420148	FBXO31	Q5XUX0	539 aa	Predicted RBP	40.87	■■■■■ 4.13
PBRM1-210	ENST00000420148	RNF17	Q9BXT8	1623 aa	Known RBP	40.86	■■■■■ 4.13
PBRM1-210	ENST00000420148	TNR	Q92752	1358 aa		40.86	■■■■■ 4.13
PBRM1-210	ENST00000420148	DNMT1	P26358	1616 aa	Known RBP	40.84	■■■■■ 4.13
PBRM1-210	ENST00000420148	APLP2	Q06481	763 aa		40.83	■■■■■ 4.13
PBRM1-210	ENST00000420148	EIF2AK4	Q9P2K8	1649 aa	Known RBP	40.82	■■■■■ 4.12
PBRM1-210	ENST00000420148	IQSEC2	Q5JU85	1478 aa		40.79	■■■■■ 4.12
PBRM1-210	ENST00000420148	ABCC3	O15438	1527 aa		40.75	■■■■■ 4.11
PBRM1-210	ENST00000420148	SHANK2	Q9UPX8	1470 aa		40.75	■■■■■ 4.11
PBRM1-210	ENST00000420148	PTPN23	Q9H3S7	1636 aa		40.74	■■■■■ 4.11
PBRM1-210	ENST00000420148	DUOX2	Q9NRD8	1548 aa		40.73	■■■■■ 4.11
PBRM1-210	ENST00000420148	ZC3H13	Q5T200	1668 aa	Known RBP	40.73	■■■■■ 4.11
PBRM1-210	ENST00000420148	ABCC5	O15440	1437 aa		40.73	■■■■■ 4.11
PBRM1-210	ENST00000420148	MROH1	Q8NDA8	1641 aa		40.72	■■■■■ 4.11
PBRM1-210	ENST00000420148	NLRP1	Q9C000	1473 aa		40.71	■■■■■ 4.11
PBRM1-210	ENST00000420148	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	40.69	■■■■■ 4.11
PBRM1-210	ENST00000420148	CROCC2	H7BZ55	1655 aa		40.69	■■■■■ 4.1
PBRM1-210	ENST00000420148	FGD6	Q6ZV73	1430 aa		40.67	■■■■■ 4.1
PBRM1-210	ENST00000420148	KIF15	Q9NS87	1388 aa		40.65	■■■■■ 4.1
PBRM1-210	ENST00000420148	DAPK1	P53355	1430 aa		40.63	■■■■■ 4.09
PBRM1-210	ENST00000420148	SPATA31D1	Q6ZQQ2	1576 aa		40.63	■■■■■ 4.09
PBRM1-210	ENST00000420148	ERBIN	Q96RT1	1412 aa		40.61	■■■■■ 4.09
PBRM1-210	ENST00000420148	POLR1A	O95602	1720 aa	Predicted RBP	40.61	■■■■■ 4.09
PBRM1-210	ENST00000420148	NEURL4	Q96JN8	1562 aa		40.61	■■■■■ 4.09
PBRM1-210	ENST00000420148	THEMIS	Q8N1K5	641 aa	Predicted RBP	40.6	■■■■■ 4.09
PBRM1-210	ENST00000420148	UGGT1	Q9NYU2	1555 aa		40.6	■■■■■ 4.09
PBRM1-210	ENST00000420148	ERVK-7	P63135	1459 aa		40.58	■■■■■ 4.09
PBRM1-210	ENST00000420148	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	40.57	■■■■■ 4.08
PBRM1-210	ENST00000420148	RRP7BP	Q9NSQ0	103 aa		40.56	■■■■■ 4.08
PBRM1-210	ENST00000420148	PRDM15	P57071	1507 aa	Predicted RBP	40.56	■■■■■ 4.08
PBRM1-210	ENST00000420148	CEP152	O94986	1710 aa		40.55	■■■■■ 4.08
PBRM1-210	ENST00000420148	ANKLE2	Q86XL3	938 aa		40.54	■■■■■ 4.08
PBRM1-210	ENST00000420148	ARHGAP31	Q2M1Z3	1444 aa		40.5	■■■■■ 4.07
PBRM1-210	ENST00000420148	MED14	O60244	1454 aa		40.49	■■■■■ 4.07
PBRM1-210	ENST00000420148	DEPDC5	O75140	1603 aa		40.49	■■■■■ 4.07
PBRM1-210	ENST00000420148	ANKRD30A	Q9BXX3	1397 aa		40.47	■■■■■ 4.07
PBRM1-210	ENST00000420148	CFAP65	Q6ZU64	1925 aa	Known RBP	40.42	■■■■■ 4.06
PBRM1-210	ENST00000420148	NPHP4	O75161	1426 aa	Predicted RBP	40.42	■■■■■ 4.06
PBRM1-210	ENST00000420148	CHIC2	Q9UKJ5	165 aa		40.4	■■■■■ 4.06
PBRM1-210	ENST00000420148	CPS1	P31327	1500 aa		40.39	■■■■■ 4.06
PBRM1-210	ENST00000420148	ADGRL2	O95490	1459 aa		40.38	■■■■■ 4.05
PBRM1-210	ENST00000420148	UBAP1L	F5GYI3	381 aa		40.36	■■■■■ 4.05
PBRM1-210	ENST00000420148	KANK1	Q14678	1352 aa		40.35	■■■■■ 4.05
PBRM1-210	ENST00000420148	VWDE	Q8N2E2	1590 aa		40.35	■■■■■ 4.05
PBRM1-210	ENST00000420148	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	40.35	■■■■■ 4.05	1e-6	■■□□□ 12.1
PBRM1-210	ENST00000420148	UBR1	Q8IWV7	1749 aa		40.35	■■■■■ 4.05
PBRM1-210	ENST00000420148	LMTK2	Q8IWU2	1503 aa		40.34	■■■■■ 4.05
PBRM1-210	ENST00000420148	IQGAP1	P46940	1657 aa		40.32	■■■■■ 4.05
PBRM1-210	ENST00000420148	FAM50A	Q14320	339 aa	Known RBP	40.27	■■■■■ 4.04
PBRM1-210	ENST00000420148	ARHGAP23	Q9P227	1491 aa		40.26	■■■■■ 4.04
PBRM1-210	ENST00000420148	SLIT1	O75093	1534 aa		40.25	■■■■■ 4.03
PBRM1-210	ENST00000420148	SCAF11	Q99590	1463 aa	Known RBP	40.23	■■■■■ 4.03
PBRM1-210	ENST00000420148	ANKRD50	Q9ULJ7	1429 aa		40.18	■■■■■ 4.02
PBRM1-210	ENST00000420148	PIK3C2B	O00750	1634 aa		40.17	■■■■■ 4.02
PBRM1-210	ENST00000420148	LTK	P29376	864 aa		40.17	■■■■■ 4.02
PBRM1-210	ENST00000420148	DISP3	Q9P2K9	1392 aa		40.17	■■■■■ 4.02
PBRM1-210	ENST00000420148	EFCAB6	Q5THR3	1501 aa		40.16	■■■■■ 4.02
PBRM1-210	ENST00000420148	NOS1	P29475	1434 aa		40.15	■■■■■ 4.02
PBRM1-210	ENST00000420148	TXNDC2	Q86VQ3	553 aa		40.14	■■■■■ 4.02
PBRM1-210	ENST00000420148	KDM5A	P29375	1690 aa	Known RBP	40.14	■■■■■ 4.02
PBRM1-210	ENST00000420148	TOM1	O60784	492 aa		40.13	■■■■■ 4.01
PBRM1-210	ENST00000420148	STRCP1	A6NGW2	1772 aa		40.12	■■■■■ 4.01
PBRM1-210	ENST00000420148	SYNM	O15061	1565 aa		40.11	■■■■■ 4.01
PBRM1-210	ENST00000420148	IDI1	Q13907	227 aa		40.11	■■■■■ 4.01
PBRM1-210	ENST00000420148	TMEM2	Q9UHN6	1383 aa		40.1	■■■■■ 4.01
PBRM1-210	ENST00000420148	EID1	Q9Y6B2	187 aa		40.08	■■■■■ 4.01
PBRM1-210	ENST00000420148	LRRC7	Q96NW7	1537 aa		40.06	■■■■■ 4
PBRM1-210	ENST00000420148	RPRD2	Q5VT52	1461 aa	Known RBP	40.06	■■■■■ 4
PBRM1-210	ENST00000420148	STAG3	Q9UJ98	1225 aa		40.04	■■■■■ 4
PBRM1-210	ENST00000420148	ROCK1	Q13464	1354 aa		40.03	■■■■■ 4
PBRM1-210	ENST00000420148	ALK	Q9UM73	1620 aa		40.02	■■■■■ 4
PBRM1-210	ENST00000420148	SLC52A1	Q9NWF4	448 aa		40.01	■■■■■ 4
PBRM1-210	ENST00000420148	PIP4K2B	P78356	416 aa		40	■■■■□ 3.99
PBRM1-210	ENST00000420148	TET3	O43151	1660 aa		39.98	■■■■□ 3.99
PBRM1-210	ENST00000420148	UNC13B	O14795	1591 aa		39.97	■■■■□ 3.99
PBRM1-210	ENST00000420148	ADGRB3	O60242	1522 aa		39.97	■■■■□ 3.99
PBRM1-210	ENST00000420148	SCAF1	Q9H7N4	1312 aa	Known RBP	39.96	■■■■□ 3.99
PBRM1-210	ENST00000420148	ILDR2	Q71H61	639 aa		39.96	■■■■□ 3.99
PBRM1-210	ENST00000420148	HSPA1L	P34931	641 aa		39.95	■■■■□ 3.99
PBRM1-210	ENST00000420148	GCC2	Q8IWJ2	1684 aa		39.89	■■■■□ 3.98
PBRM1-210	ENST00000420148	IQGAP3	Q86VI3	1631 aa		39.81	■■■■□ 3.96
PBRM1-210	ENST00000420148	XIRP1	Q702N8	1843 aa	Known RBP	39.8	■■■■□ 3.96
PBRM1-210	ENST00000420148	ZFYVE9	O95405	1425 aa		39.8	■■■■□ 3.96
PBRM1-210	ENST00000420148	PPARGC1B	Q86YN6	1023 aa	Known RBP	39.79	■■■■□ 3.96
PBRM1-210	ENST00000420148		E9PCH4	1651 aa		39.78	■■■■□ 3.96
PBRM1-210	ENST00000420148	KCNA6	P17658	529 aa		39.78	■■■■□ 3.96
PBRM1-210	ENST00000420148	SLC26A8	Q96RN1	970 aa		39.77	■■■■□ 3.96
PBRM1-210	ENST00000420148	TMEM131L	A2VDJ0	1609 aa		39.76	■■■■□ 3.96
PBRM1-210	ENST00000420148	ITGAE	P38570	1179 aa		39.74	■■■■□ 3.95

Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms