RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 NLRP7Q8WX94 980 aa8.09□□□□□ -1.11
VPS13A-207ENST00000419472 GOLGA2Q08379 1002 aa8.09□□□□□ -1.11
VPS13A-207ENST00000419472 SSTR3P32745 418 aaPredicted RBP8.08□□□□□ -1.12
VPS13A-207ENST00000419472 CALR3Q96L12 384 aaKnown RBP8.08□□□□□ -1.12
VPS13A-207ENST00000419472 FOXK1P85037 733 aa8.07□□□□□ -1.12
VPS13A-207ENST00000419472 TRPC6Q9Y210 931 aa8.07□□□□□ -1.12
VPS13A-207ENST00000419472 UPF1Q92900 1129 aaKnown RBP eCLIP8.07□□□□□ -1.12
VPS13A-207ENST00000419472 MAP3K9P80192 1104 aa8.06□□□□□ -1.12
VPS13A-207ENST00000419472 GLMNQ92990 594 aa8.06□□□□□ -1.12
VPS13A-207ENST00000419472 PLPP6Q8IY26 295 aa8.06□□□□□ -1.12
VPS13A-207ENST00000419472 GPCPD1Q9NPB8 672 aa8.06□□□□□ -1.12
VPS13A-207ENST00000419472 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.05□□□□□ -1.12
VPS13A-207ENST00000419472 PPP1R15AO75807 674 aaPredicted RBP8.05□□□□□ -1.12
VPS13A-207ENST00000419472 MYSM1Q5VVJ2 828 aa8.05□□□□□ -1.12
VPS13A-207ENST00000419472 TMEM106CQ9BVX2 250 aa8.05□□□□□ -1.12
VPS13A-207ENST00000419472 RFC5P40937 340 aa8.05□□□□□ -1.12
VPS13A-207ENST00000419472 USP35Q9P2H5 1018 aa8.05□□□□□ -1.12
VPS13A-207ENST00000419472 RFX1P22670 979 aa8.05□□□□□ -1.12
VPS13A-207ENST00000419472 DPY19L2Q6NUT2 758 aa8.05□□□□□ -1.12
VPS13A-207ENST00000419472 ACIN1Q9UKV3 1341 aaKnown RBP8.04□□□□□ -1.12
VPS13A-207ENST00000419472 CLCN1P35523 988 aa8.04□□□□□ -1.12
VPS13A-207ENST00000419472 MTMR14Q8NCE2 650 aa8.04□□□□□ -1.12
VPS13A-207ENST00000419472 TBC1D12O60347 775 aa8.04□□□□□ -1.12
VPS13A-207ENST00000419472 FAM161AQ3B820 660 aa8.04□□□□□ -1.12
VPS13A-207ENST00000419472 CDHR5Q9HBB8 845 aa8.04□□□□□ -1.12
VPS13A-207ENST00000419472 ABL2P42684 1182 aa8.02□□□□□ -1.13
VPS13A-207ENST00000419472 TMC2Q8TDI7 906 aa8.02□□□□□ -1.13
VPS13A-207ENST00000419472 BRD1O95696 1058 aa8.01□□□□□ -1.13
VPS13A-207ENST00000419472 CLK2P49760 499 aaKnown RBP8.01□□□□□ -1.13
VPS13A-207ENST00000419472 CCDC27Q2M243 656 aa8.01□□□□□ -1.13
VPS13A-207ENST00000419472 IVNS1ABPQ9Y6Y0 642 aa8.01□□□□□ -1.13
VPS13A-207ENST00000419472 TBC1D2BQ9UPU7 963 aa8□□□□□ -1.13
VPS13A-207ENST00000419472 C2orf72A6NCS6 295 aa8□□□□□ -1.13
VPS13A-207ENST00000419472 UNCXA6NJT0 531 aa8□□□□□ -1.13
VPS13A-207ENST00000419472 NPDC1Q9NQX5 325 aaPredicted RBP7.99□□□□□ -1.13
VPS13A-207ENST00000419472 FAM217BQ9NTX9 383 aaPredicted RBP7.99□□□□□ -1.13
VPS13A-207ENST00000419472 PAK3O75914 559 aaPredicted RBP7.99□□□□□ -1.13
VPS13A-207ENST00000419472 PRKAR2AP13861 404 aaKnown RBP7.99□□□□□ -1.13
VPS13A-207ENST00000419472 KCNA1Q09470 495 aa7.99□□□□□ -1.13
VPS13A-207ENST00000419472 MICALL2Q8IY33 904 aa7.99□□□□□ -1.13
VPS13A-207ENST00000419472 ADAMTS19Q8TE59 1207 aa7.99□□□□□ -1.13
VPS13A-207ENST00000419472 PHF12Q96QT6 1004 aa7.99□□□□□ -1.13
VPS13A-207ENST00000419472 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.99□□□□□ -1.131e-8■■■■■ 27.1
VPS13A-207ENST00000419472 PELP1Q8IZL8 1130 aaKnown RBP7.99□□□□□ -1.13
VPS13A-207ENST00000419472 PBXIP1Q96AQ6 731 aa7.99□□□□□ -1.13
VPS13A-207ENST00000419472 LIMD1Q9UGP4 676 aa7.99□□□□□ -1.13
VPS13A-207ENST00000419472 MYO15BQ96JP2 1530 aa7.98□□□□□ -1.13
VPS13A-207ENST00000419472 NACADO15069 1562 aa7.98□□□□□ -1.13
VPS13A-207ENST00000419472 RB1CC1Q8TDY2 1594 aa7.98□□□□□ -1.13
VPS13A-207ENST00000419472 PTGER2P43116 358 aa7.98□□□□□ -1.13
VPS13A-207ENST00000419472 ILDR1Q86SU0 546 aaPredicted RBP7.98□□□□□ -1.13
VPS13A-207ENST00000419472 BANK1Q8NDB2 785 aa7.98□□□□□ -1.13
VPS13A-207ENST00000419472 CDK11BP21127 795 aaKnown RBP7.96□□□□□ -1.14
VPS13A-207ENST00000419472 MYT1LQ9UL68 1186 aa7.96□□□□□ -1.14
VPS13A-207ENST00000419472 CDK11AQ9UQ88 783 aaPredicted RBP7.96□□□□□ -1.14
VPS13A-207ENST00000419472 AMOTL2Q9Y2J4 779 aa7.96□□□□□ -1.14
VPS13A-207ENST00000419472 HSP90B1P14625 803 aaKnown RBP7.95□□□□□ -1.14
VPS13A-207ENST00000419472 CFAP70Q5T0N1 1121 aa7.95□□□□□ -1.14
VPS13A-207ENST00000419472 TBC1D2Q9BYX2 928 aa7.95□□□□□ -1.14
VPS13A-207ENST00000419472 SRPK2P78362 688 aaKnown RBP7.95□□□□□ -1.14
VPS13A-207ENST00000419472 SND1Q7KZF4 910 aaKnown RBP eCLIP7.94□□□□□ -1.14
VPS13A-207ENST00000419472 KIF3CO14782 793 aa7.93□□□□□ -1.14
VPS13A-207ENST00000419472 HDGFL1Q5TGJ6 251 aa7.93□□□□□ -1.14
VPS13A-207ENST00000419472 PATL2C9JE40 543 aaKnown RBP7.93□□□□□ -1.14
VPS13A-207ENST00000419472 USTQ9Y2C2 406 aa7.93□□□□□ -1.14
VPS13A-207ENST00000419472 CSB-PGBD3P0DP91 1061 aa7.93□□□□□ -1.14
VPS13A-207ENST00000419472 PDE4CQ08493 712 aa7.92□□□□□ -1.14
VPS13A-207ENST00000419472 METTL3Q86U44 580 aaKnown RBP7.92□□□□□ -1.14
VPS13A-207ENST00000419472 PUS7Q96PZ0 661 aaKnown RBP7.92□□□□□ -1.14
VPS13A-207ENST00000419472 CSPP1Q1MSJ5 1256 aa7.92□□□□□ -1.14
VPS13A-207ENST00000419472 TSR1Q2NL82 804 aaKnown RBP7.91□□□□□ -1.14
VPS13A-207ENST00000419472 DCAF1Q9Y4B6 1507 aa7.91□□□□□ -1.14
VPS13A-207ENST00000419472 EVI5O60447 810 aa7.91□□□□□ -1.14
VPS13A-207ENST00000419472 TMEM259Q4ZIN3 620 aa7.91□□□□□ -1.14
VPS13A-207ENST00000419472 PPP2R2DQ66LE6 453 aa7.91□□□□□ -1.14
VPS13A-207ENST00000419472 ZRANB1Q9UGI0 708 aa7.9□□□□□ -1.14
VPS13A-207ENST00000419472 QPCTQ16769 361 aa7.9□□□□□ -1.15
VPS13A-207ENST00000419472 CDCA8Q53HL2 280 aa7.9□□□□□ -1.15
VPS13A-207ENST00000419472 MS4A3Q96HJ5 214 aa7.89□□□□□ -1.15
VPS13A-207ENST00000419472 RBM33Q96EV2 1170 aaKnown RBP7.89□□□□□ -1.15
VPS13A-207ENST00000419472 CACNB1Q02641 598 aaPredicted RBP7.88□□□□□ -1.15
VPS13A-207ENST00000419472 WWC1Q8IX03 1113 aa7.88□□□□□ -1.15
VPS13A-207ENST00000419472 MAP3K7O43318 606 aa7.88□□□□□ -1.15
VPS13A-207ENST00000419472 HMGB1P09429 215 aaKnown RBP7.88□□□□□ -1.15
VPS13A-207ENST00000419472 IGSF5Q9NSI5 407 aa7.88□□□□□ -1.15
VPS13A-207ENST00000419472 TMEM88BA6NKF7 163 aa7.88□□□□□ -1.15
VPS13A-207ENST00000419472 TTLL13PA6NNM8 815 aa7.87□□□□□ -1.15
VPS13A-207ENST00000419472 FAM177A1Q8N128 213 aaPredicted RBP7.87□□□□□ -1.15
VPS13A-207ENST00000419472 PPP1R12CQ9BZL4 782 aa7.87□□□□□ -1.15
VPS13A-207ENST00000419472 AP1G2O75843 785 aa7.87□□□□□ -1.15
VPS13A-207ENST00000419472 MYT1Q01538 1121 aa7.87□□□□□ -1.15
VPS13A-207ENST00000419472 EN1Q05925 392 aaPredicted RBP7.87□□□□□ -1.15
VPS13A-207ENST00000419472 RIC3Q7Z5B4 369 aa7.87□□□□□ -1.15
VPS13A-207ENST00000419472 ZCCHC6Q5VYS8 1495 aaKnown RBP7.86□□□□□ -1.15
VPS13A-207ENST00000419472 VRTNQ9H8Y1 702 aa7.86□□□□□ -1.15
VPS13A-207ENST00000419472 PDCD7Q8N8D1 485 aaKnown RBP7.86□□□□□ -1.15
VPS13A-207ENST00000419472 KIAA1522Q9P206 1035 aaPredicted RBP7.86□□□□□ -1.15
VPS13A-207ENST00000419472 TMEM92Q6UXU6 159 aa7.85□□□□□ -1.15
VPS13A-207ENST00000419472 PALM3A6NDB9 673 aaPredicted RBP7.85□□□□□ -1.15
VPS13A-207ENST00000419472 GPR37L1O60883 481 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms