RNA–Protein interactions for RNA: ENST00000417628.6

ECHDC1-206, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 5

Gene ECHDC1, Length 767 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-206ENST00000417628 BCL11BQ9C0K0 894 aaPredicted RBP9.69□□□□□ -0.86
ECHDC1-206ENST00000417628 SETD1AO15047 1707 aaKnown RBP9.68□□□□□ -0.86
ECHDC1-206ENST00000417628 ABCA9Q8IUA7 1624 aa9.68□□□□□ -0.86
ECHDC1-206ENST00000417628 FARP1Q9Y4F1 1045 aaPredicted RBP9.68□□□□□ -0.86
ECHDC1-206ENST00000417628 STK24Q9Y6E0 443 aa9.68□□□□□ -0.86
ECHDC1-206ENST00000417628 ZMYM4Q5VZL5 1548 aa9.66□□□□□ -0.86
ECHDC1-206ENST00000417628 DENND4BO75064 1496 aaPredicted RBP9.66□□□□□ -0.86
ECHDC1-206ENST00000417628 RICTORQ6R327 1708 aa9.66□□□□□ -0.86
ECHDC1-206ENST00000417628 TSPYL2Q9H2G4 693 aaPredicted RBP9.66□□□□□ -0.86
ECHDC1-206ENST00000417628 FHOD3Q2V2M9 1422 aa9.65□□□□□ -0.86
ECHDC1-206ENST00000417628 POTEAQ6S8J7 498 aa9.65□□□□□ -0.86
ECHDC1-206ENST00000417628 CHRDL2Q6WN34 429 aa9.65□□□□□ -0.86
ECHDC1-206ENST00000417628 CAMSAP1Q5T5Y3 1602 aa9.64□□□□□ -0.87
ECHDC1-206ENST00000417628 UGGT2Q9NYU1 1516 aa9.63□□□□□ -0.87
ECHDC1-206ENST00000417628 MAGI2Q86UL8 1455 aa9.63□□□□□ -0.87
ECHDC1-206ENST00000417628 ABCA8O94911 1581 aa9.62□□□□□ -0.87
ECHDC1-206ENST00000417628 IGF1RP08069 1367 aa9.62□□□□□ -0.87
ECHDC1-206ENST00000417628 PRKAR2AP13861 404 aaKnown RBP9.61□□□□□ -0.87
ECHDC1-206ENST00000417628 UPF1Q92900 1129 aaKnown RBP eCLIP9.61□□□□□ -0.871e-6■□□□□ 8
ECHDC1-206ENST00000417628 PTPRKQ15262 1439 aa9.61□□□□□ -0.87
ECHDC1-206ENST00000417628 CPS1P31327 1500 aa9.61□□□□□ -0.87
ECHDC1-206ENST00000417628 FXR2P51116 673 aaKnown RBP eCLIP9.6□□□□□ -0.87
ECHDC1-206ENST00000417628 SETD1BQ9UPS6 1966 aaKnown RBP9.6□□□□□ -0.87
ECHDC1-206ENST00000417628 NCKAP5LQ9HCH0 1330 aa9.59□□□□□ -0.87
ECHDC1-206ENST00000417628 C9orf84Q5VXU9 1444 aa9.59□□□□□ -0.87
ECHDC1-206ENST00000417628 TRAPPC8Q9Y2L5 1435 aa9.59□□□□□ -0.87
ECHDC1-206ENST00000417628 TPRNQ4KMQ1 711 aa9.59□□□□□ -0.87
ECHDC1-206ENST00000417628 CCDC61Q9Y6R9 512 aa9.59□□□□□ -0.87
ECHDC1-206ENST00000417628 ALKQ9UM73 1620 aa9.58□□□□□ -0.88
ECHDC1-206ENST00000417628 ZNF467Q7Z7K2 595 aaPredicted RBP9.58□□□□□ -0.88
ECHDC1-206ENST00000417628 PCDHB8Q9UN66 801 aa9.58□□□□□ -0.88
ECHDC1-206ENST00000417628 PCDHB13Q9Y5F0 798 aa9.58□□□□□ -0.88
ECHDC1-206ENST00000417628 C3P01024 1663 aa9.58□□□□□ -0.88
ECHDC1-206ENST00000417628 IFFO2Q5TF58 517 aa9.57□□□□□ -0.88
ECHDC1-206ENST00000417628 PLA2R1Q13018 1463 aa9.57□□□□□ -0.88
ECHDC1-206ENST00000417628 CFAP74Q9C0B2 1584 aa9.57□□□□□ -0.88
ECHDC1-206ENST00000417628 ATP10AO60312 1499 aa9.56□□□□□ -0.88
ECHDC1-206ENST00000417628 PIP4P2Q8N4L2 257 aa9.56□□□□□ -0.88
ECHDC1-206ENST00000417628 RYDENQ9NUL5 291 aaKnown RBP9.56□□□□□ -0.88
ECHDC1-206ENST00000417628 HECW1Q76N89 1606 aa9.56□□□□□ -0.88
ECHDC1-206ENST00000417628 CARMIL1Q5VZK9 1371 aa9.55□□□□□ -0.88
ECHDC1-206ENST00000417628 PDAP1Q13442 181 aaKnown RBP9.55□□□□□ -0.88
ECHDC1-206ENST00000417628 TCOF1Q13428 1488 aaKnown RBP9.54□□□□□ -0.88
ECHDC1-206ENST00000417628 KIF27Q86VH2 1401 aa9.54□□□□□ -0.88
ECHDC1-206ENST00000417628 NBR1Q14596 966 aa9.52□□□□□ -0.89
ECHDC1-206ENST00000417628 ZNF579Q8NAF0 562 aaKnown RBP9.52□□□□□ -0.89
ECHDC1-206ENST00000417628 RAPGEF2Q9Y4G8 1499 aa9.52□□□□□ -0.89
ECHDC1-206ENST00000417628 PSEN1P49768 467 aa9.51□□□□□ -0.89
ECHDC1-206ENST00000417628 SHANK2Q9UPX8 1470 aa9.51□□□□□ -0.89
ECHDC1-206ENST00000417628 ATP10BO94823 1461 aa9.5□□□□□ -0.89
ECHDC1-206ENST00000417628 NPATQ14207 1427 aa9.49□□□□□ -0.89
ECHDC1-206ENST00000417628 ZNF142P52746 1687 aaPredicted RBP9.49□□□□□ -0.89
ECHDC1-206ENST00000417628 ARID3CA6NKF2 412 aa9.49□□□□□ -0.89
ECHDC1-206ENST00000417628 GOLGA3Q08378 1498 aa9.48□□□□□ -0.89
ECHDC1-206ENST00000417628 MYT1Q01538 1121 aa9.48□□□□□ -0.89
ECHDC1-206ENST00000417628 IFNL1Q8IU54 200 aa9.48□□□□□ -0.89
ECHDC1-206ENST00000417628 PELP1Q8IZL8 1130 aaKnown RBP9.48□□□□□ -0.89
ECHDC1-206ENST00000417628 ESF1Q9H501 851 aaKnown RBP9.48□□□□□ -0.89
ECHDC1-206ENST00000417628 RNF17Q9BXT8 1623 aaKnown RBP9.48□□□□□ -0.89
ECHDC1-206ENST00000417628 CADPS2Q86UW7 1296 aa9.47□□□□□ -0.89
ECHDC1-206ENST00000417628 KIF12Q96FN5 646 aa9.47□□□□□ -0.89
ECHDC1-206ENST00000417628 MFRPQ9BY79 579 aa9.47□□□□□ -0.89
ECHDC1-206ENST00000417628 CNTLNQ9NXG0 1405 aa9.47□□□□□ -0.89
ECHDC1-206ENST00000417628 MAP3K13O43283 966 aa9.46□□□□□ -0.9
ECHDC1-206ENST00000417628 LRRC7Q96NW7 1537 aa9.46□□□□□ -0.9
ECHDC1-206ENST00000417628 MYO3AQ8NEV4 1616 aa9.45□□□□□ -0.9
ECHDC1-206ENST00000417628 CEP170BQ9Y4F5 1589 aaPredicted RBP9.45□□□□□ -0.9
ECHDC1-206ENST00000417628 SUPT6HQ7KZ85 1726 aaKnown RBP9.45□□□□□ -0.9
ECHDC1-206ENST00000417628 PAK3O75914 559 aaPredicted RBP9.44□□□□□ -0.9
ECHDC1-206ENST00000417628 AGLP35573 1532 aa9.44□□□□□ -0.9
ECHDC1-206ENST00000417628 REREQ9P2R6 1566 aa9.43□□□□□ -0.9
ECHDC1-206ENST00000417628 SCAPERQ9BY12 1400 aa9.43□□□□□ -0.9
ECHDC1-206ENST00000417628 TRIM52Q96A61 297 aa9.43□□□□□ -0.9
ECHDC1-206ENST00000417628 VWDEQ8N2E2 1590 aa9.42□□□□□ -0.9
ECHDC1-206ENST00000417628 SRCAPQ6ZRS2 3230 aa9.42□□□□□ -0.9
ECHDC1-206ENST00000417628 RBM33Q96EV2 1170 aaKnown RBP9.42□□□□□ -0.9
ECHDC1-206ENST00000417628 SETBP1Q9Y6X0 1596 aa9.41□□□□□ -0.9
ECHDC1-206ENST00000417628 ZRANB1Q9UGI0 708 aa9.41□□□□□ -0.9
ECHDC1-206ENST00000417628 SYNMO15061 1565 aa9.41□□□□□ -0.9
ECHDC1-206ENST00000417628 MROH2AA6NES4 1674 aa9.4□□□□□ -0.9
ECHDC1-206ENST00000417628 EFCAB3Q8N7B9 438 aa9.4□□□□□ -0.9
ECHDC1-206ENST00000417628 FBXO22Q8NEZ5 403 aa9.4□□□□□ -0.9
ECHDC1-206ENST00000417628 NEURL4Q96JN8 1562 aa9.4□□□□□ -0.9
ECHDC1-206ENST00000417628 DIP2CQ9Y2E4 1556 aa9.4□□□□□ -0.9
ECHDC1-206ENST00000417628 PPP1R37O75864 691 aa9.39□□□□□ -0.91
ECHDC1-206ENST00000417628 FAM9AQ8IZU1 332 aaPredicted RBP9.39□□□□□ -0.91
ECHDC1-206ENST00000417628 CDK12Q9NYV4 1490 aaPredicted RBP9.39□□□□□ -0.91
ECHDC1-206ENST00000417628 POLR1AO95602 1720 aaPredicted RBP9.39□□□□□ -0.91
ECHDC1-206ENST00000417628 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.38□□□□□ -0.91
ECHDC1-206ENST00000417628 CABP2Q9NPB3 220 aa9.38□□□□□ -0.91
ECHDC1-206ENST00000417628 ZNF518AQ6AHZ1 1483 aa9.37□□□□□ -0.91
ECHDC1-206ENST00000417628 PHF12Q96QT6 1004 aa9.37□□□□□ -0.91
ECHDC1-206ENST00000417628 ZNF772Q68DY9 489 aaPredicted RBP9.36□□□□□ -0.91
ECHDC1-206ENST00000417628 PHF8Q9UPP1 1060 aa9.36□□□□□ -0.91
ECHDC1-206ENST00000417628 KDM5CP41229 1560 aa9.36□□□□□ -0.91
ECHDC1-206ENST00000417628 SOX12O15370 315 aa9.35□□□□□ -0.91
ECHDC1-206ENST00000417628 CD44P16070 742 aaKnown RBP9.35□□□□□ -0.91
ECHDC1-206ENST00000417628 NLRP6P59044 892 aa9.35□□□□□ -0.91
ECHDC1-206ENST00000417628 ZMYM3Q14202 1370 aa9.35□□□□□ -0.91
ECHDC1-206ENST00000417628 A2ML1A8K2U0 1454 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms