RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 ZNF335Q9H4Z2 1342 aaPredicted RBP18.29■□□□□ 0.52
USP4-204ENST00000416417 WASHC2CQ9Y4E1 1318 aa18.29■□□□□ 0.52
USP4-204ENST00000416417 KDM5DQ9BY66 1539 aa18.27■□□□□ 0.52
USP4-204ENST00000416417 TNRQ92752 1358 aa18.27■□□□□ 0.51
USP4-204ENST00000416417 MYOM3Q5VTT5 1437 aa18.26■□□□□ 0.51
USP4-204ENST00000416417 A2ML1A8K2U0 1454 aa18.26■□□□□ 0.51
USP4-204ENST00000416417 DNMT1P26358 1616 aaKnown RBP18.25■□□□□ 0.51
USP4-204ENST00000416417 PLA2R1Q13018 1463 aa18.25■□□□□ 0.51
USP4-204ENST00000416417 TCOF1Q13428 1488 aaKnown RBP18.25■□□□□ 0.51
USP4-204ENST00000416417 MAP3K1Q13233 1512 aa18.24■□□□□ 0.51
USP4-204ENST00000416417 PKD2Q13563 968 aa18.24■□□□□ 0.51
USP4-204ENST00000416417 PZPP20742 1482 aa18.24■□□□□ 0.51
USP4-204ENST00000416417 MIA2Q96PC5 1412 aa18.22■□□□□ 0.51
USP4-204ENST00000416417 MAST1Q9Y2H9 1570 aa18.21■□□□□ 0.51
USP4-204ENST00000416417 APLP2Q06481 763 aa18.19■□□□□ 0.5
USP4-204ENST00000416417 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.19■□□□□ 0.5
USP4-204ENST00000416417 RNF17Q9BXT8 1623 aaKnown RBP18.18■□□□□ 0.5
USP4-204ENST00000416417 ABCC3O15438 1527 aa18.17■□□□□ 0.5
USP4-204ENST00000416417 RRP7BPQ9NSQ0 103 aa18.17■□□□□ 0.5
USP4-204ENST00000416417 FAM135AQ9P2D6 1515 aa18.17■□□□□ 0.5
USP4-204ENST00000416417 ABCC5O15440 1437 aa18.16■□□□□ 0.5
USP4-204ENST00000416417 MROH1Q8NDA8 1641 aa18.16■□□□□ 0.5
USP4-204ENST00000416417 NEURL4Q96JN8 1562 aa18.15■□□□□ 0.5
USP4-204ENST00000416417 PTPN23Q9H3S7 1636 aa18.15■□□□□ 0.5
USP4-204ENST00000416417 UBAP1LF5GYI3 381 aa18.15■□□□□ 0.5
USP4-204ENST00000416417 IQSEC2Q5JU85 1478 aa18.14■□□□□ 0.49
USP4-204ENST00000416417 CHIC2Q9UKJ5 165 aa18.13■□□□□ 0.49
USP4-204ENST00000416417 KIF15Q9NS87 1388 aa18.13■□□□□ 0.49
USP4-204ENST00000416417 UGGT1Q9NYU2 1555 aa18.13■□□□□ 0.49
USP4-204ENST00000416417 CEP152O94986 1710 aa18.13■□□□□ 0.49
USP4-204ENST00000416417 ANKLE2Q86XL3 938 aa18.13■□□□□ 0.49
USP4-204ENST00000416417 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.13■□□□□ 0.497e-6■□□□□ 10.8
USP4-204ENST00000416417 DISP3Q9P2K9 1392 aa18.13■□□□□ 0.49
USP4-204ENST00000416417 NLRP1Q9C000 1473 aa18.13■□□□□ 0.49
USP4-204ENST00000416417 DUOX2Q9NRD8 1548 aa18.13■□□□□ 0.49
USP4-204ENST00000416417 EIF2AK4Q9P2K8 1649 aaKnown RBP18.13■□□□□ 0.49
USP4-204ENST00000416417 POLR1AO95602 1720 aaPredicted RBP18.12■□□□□ 0.49
USP4-204ENST00000416417 THEMISQ8N1K5 641 aaPredicted RBP18.12■□□□□ 0.49
USP4-204ENST00000416417 ERVK-7P63135 1459 aa18.11■□□□□ 0.49
USP4-204ENST00000416417 DAPK1P53355 1430 aa18.11■□□□□ 0.49
USP4-204ENST00000416417 FGD6Q6ZV73 1430 aa18.11■□□□□ 0.49
USP4-204ENST00000416417 CROCC2H7BZ55 1655 aa18.11■□□□□ 0.49
USP4-204ENST00000416417 ZC3H13Q5T200 1668 aaKnown RBP18.1■□□□□ 0.49
USP4-204ENST00000416417 SPATA31D1Q6ZQQ2 1576 aa18.1■□□□□ 0.49
USP4-204ENST00000416417 ILDR2Q71H61 639 aa18.08■□□□□ 0.49
USP4-204ENST00000416417 NPHP4O75161 1426 aaPredicted RBP18.08■□□□□ 0.48
USP4-204ENST00000416417 SHANK2Q9UPX8 1470 aa18.07■□□□□ 0.48
USP4-204ENST00000416417 CFAP65Q6ZU64 1925 aaKnown RBP18.07■□□□□ 0.48
USP4-204ENST00000416417 SCAF1Q9H7N4 1312 aaKnown RBP18.06■□□□□ 0.48
USP4-204ENST00000416417 PIP4K2BP78356 416 aa18.05■□□□□ 0.48
USP4-204ENST00000416417 ERBINQ96RT1 1412 aa18.05■□□□□ 0.48
USP4-204ENST00000416417 VWDEQ8N2E2 1590 aa18.04■□□□□ 0.48
USP4-204ENST00000416417 PRDM15P57071 1507 aaPredicted RBP18.04■□□□□ 0.48
USP4-204ENST00000416417 FAM50AQ14320 339 aaKnown RBP18.03■□□□□ 0.48
USP4-204ENST00000416417 MED14O60244 1454 aa18.02■□□□□ 0.48
USP4-204ENST00000416417 DEPDC5O75140 1603 aa18.02■□□□□ 0.48
USP4-204ENST00000416417 IQGAP1P46940 1657 aa18.01■□□□□ 0.47
USP4-204ENST00000416417 ANKRD30AQ9BXX3 1397 aa18.01■□□□□ 0.47
USP4-204ENST00000416417 CPS1P31327 1500 aa18.01■□□□□ 0.47
USP4-204ENST00000416417 UBR1Q8IWV7 1749 aa18■□□□□ 0.47
USP4-204ENST00000416417 LTKP29376 864 aa18■□□□□ 0.47
USP4-204ENST00000416417 ARHGAP31Q2M1Z3 1444 aa17.98■□□□□ 0.47
USP4-204ENST00000416417 KANK1Q14678 1352 aa17.98■□□□□ 0.47
USP4-204ENST00000416417 HSPA1LP34931 641 aa17.98■□□□□ 0.47
USP4-204ENST00000416417 TXNDC2Q86VQ3 553 aa17.98■□□□□ 0.47
USP4-204ENST00000416417 SENP3Q9H4L4 574 aaPredicted RBP17.98■□□□□ 0.47
USP4-204ENST00000416417 STRCP1A6NGW2 1772 aa17.97■□□□□ 0.47
USP4-204ENST00000416417 SCAF11Q99590 1463 aaKnown RBP17.96■□□□□ 0.47
USP4-204ENST00000416417 TOM1O60784 492 aa17.96■□□□□ 0.47
USP4-204ENST00000416417 PIK3C2BO00750 1634 aa17.95■□□□□ 0.46
USP4-204ENST00000416417 PPARGC1BQ86YN6 1023 aaKnown RBP17.95■□□□□ 0.46
USP4-204ENST00000416417 STAG3Q9UJ98 1225 aa17.94■□□□□ 0.46
USP4-204ENST00000416417 ARHGAP23Q9P227 1491 aa17.94■□□□□ 0.46
USP4-204ENST00000416417 IDI1Q13907 227 aa17.93■□□□□ 0.46
USP4-204ENST00000416417 ALKQ9UM73 1620 aa17.93■□□□□ 0.46
USP4-204ENST00000416417 ADGRL2O95490 1459 aa17.92■□□□□ 0.46
USP4-204ENST00000416417 SLIT1O75093 1534 aa17.92■□□□□ 0.46
USP4-204ENST00000416417 LRRC7Q96NW7 1537 aa17.92■□□□□ 0.46
USP4-204ENST00000416417 LMTK2Q8IWU2 1503 aa17.92■□□□□ 0.46
USP4-204ENST00000416417 SYNMO15061 1565 aa17.91■□□□□ 0.46
USP4-204ENST00000416417 TMEM2Q9UHN6 1383 aa17.9■□□□□ 0.46
USP4-204ENST00000416417 EID1Q9Y6B2 187 aa17.9■□□□□ 0.46
USP4-204ENST00000416417 ANKRD50Q9ULJ7 1429 aa17.89■□□□□ 0.46
USP4-204ENST00000416417 EFCAB6Q5THR3 1501 aa17.89■□□□□ 0.45
USP4-204ENST00000416417 NOS1P29475 1434 aa17.87■□□□□ 0.45
USP4-204ENST00000416417 ITGAEP38570 1179 aa17.87■□□□□ 0.45
USP4-204ENST00000416417 SOCS7O14512 581 aa17.86■□□□□ 0.45
USP4-204ENST00000416417 SLC26A8Q96RN1 970 aa17.86■□□□□ 0.45
USP4-204ENST00000416417 RBM33Q96EV2 1170 aaKnown RBP17.85■□□□□ 0.45
USP4-204ENST00000416417 ADGRB3O60242 1522 aa17.82■□□□□ 0.44
USP4-204ENST00000416417 BCANQ96GW7 911 aa17.82■□□□□ 0.44
USP4-204ENST00000416417 MED1Q15648 1581 aaPredicted RBP17.81■□□□□ 0.44
USP4-204ENST00000416417 XIRP1Q702N8 1843 aaKnown RBP17.8■□□□□ 0.44
USP4-204ENST00000416417 CHGAP10645 457 aaKnown RBP17.79■□□□□ 0.44
USP4-204ENST00000416417 SLC52A1Q9NWF4 448 aa17.79■□□□□ 0.44
USP4-204ENST00000416417 TET3O43151 1660 aa17.79■□□□□ 0.44
USP4-204ENST00000416417 KDM5AP29375 1690 aaKnown RBP17.79■□□□□ 0.44
USP4-204ENST00000416417 NUTM2DQ5VT03 806 aaPredicted RBP17.77■□□□□ 0.44
USP4-204ENST00000416417 UNC13BO14795 1591 aa17.77■□□□□ 0.44
USP4-204ENST00000416417 RPRD2Q5VT52 1461 aaKnown RBP17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 139.3 ms