RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 AKAP17AQ02040 695 aaKnown RBP16.39■□□□□ 0.21
CCDC88A-204ENST00000413716 NEFHP12036 1026 aa16.38■□□□□ 0.21
CCDC88A-204ENST00000413716 NAP1L1P55209 391 aaKnown RBP16.38■□□□□ 0.21
CCDC88A-204ENST00000413716 RRP7BPQ9NSQ0 103 aa16.38■□□□□ 0.21
CCDC88A-204ENST00000413716 NOL8Q76FK4 1167 aaKnown RBP16.37■□□□□ 0.21
CCDC88A-204ENST00000413716 ERCC4Q92889 916 aaPredicted RBP16.36■□□□□ 0.21
CCDC88A-204ENST00000413716 CCDC47Q96A33 483 aaKnown RBP16.36■□□□□ 0.21
CCDC88A-204ENST00000413716 GOLGA6L7A0A1B0GV03 622 aa16.36■□□□□ 0.21
CCDC88A-204ENST00000413716 HSP90AB2PQ58FF8 381 aa16.35■□□□□ 0.21
CCDC88A-204ENST00000413716 MNS1Q8NEH6 495 aa16.35■□□□□ 0.21
CCDC88A-204ENST00000413716 FAM184AQ8NB25 1140 aa16.35■□□□□ 0.21
CCDC88A-204ENST00000413716 LEKR1Q6ZMV7 388 aa16.35■□□□□ 0.21
CCDC88A-204ENST00000413716 FOXD4L1Q9NU39 408 aa16.34■□□□□ 0.21
CCDC88A-204ENST00000413716 TOMM22Q9NS69 142 aa16.34■□□□□ 0.21
CCDC88A-204ENST00000413716 FOXD4L5Q5VV16 416 aaPredicted RBP16.33■□□□□ 0.21
CCDC88A-204ENST00000413716 FOXD4L4Q8WXT5 416 aaPredicted RBP16.33■□□□□ 0.21
CCDC88A-204ENST00000413716 SPAG9O60271 1321 aaKnown RBP16.33■□□□□ 0.2
CCDC88A-204ENST00000413716 CAGE1Q8TC20 777 aa16.33■□□□□ 0.2
CCDC88A-204ENST00000413716 TIMELESSQ9UNS1 1208 aa16.33■□□□□ 0.2
CCDC88A-204ENST00000413716 DDX49Q9Y6V7 483 aaKnown RBP16.32■□□□□ 0.2
CCDC88A-204ENST00000413716 ZNF330Q9Y3S2 320 aaPredicted RBP16.32■□□□□ 0.2
CCDC88A-204ENST00000413716 GSE1Q14687 1217 aa16.31■□□□□ 0.2
CCDC88A-204ENST00000413716 EPS15P42566 896 aa16.31■□□□□ 0.2
CCDC88A-204ENST00000413716 TSPYL1Q9H0U9 437 aa16.31■□□□□ 0.2
CCDC88A-204ENST00000413716 TMF1P82094 1093 aa16.3■□□□□ 0.2
CCDC88A-204ENST00000413716 MCTP1Q6DN14 999 aa16.3■□□□□ 0.2
CCDC88A-204ENST00000413716 KTN1Q86UP2 1357 aaKnown RBP16.3■□□□□ 0.2
CCDC88A-204ENST00000413716 KIAA0754O94854 1291 aa16.29■□□□□ 0.2
CCDC88A-204ENST00000413716 MORC1Q86VD1 984 aa16.29■□□□□ 0.2
CCDC88A-204ENST00000413716 STK31Q9BXU1 1019 aa16.29■□□□□ 0.2
CCDC88A-204ENST00000413716 IFT57Q9NWB7 429 aa16.29■□□□□ 0.2
CCDC88A-204ENST00000413716 PKNOX2Q96KN3 472 aa16.28■□□□□ 0.2
CCDC88A-204ENST00000413716 ANKRD18AQ8IVF6 992 aa16.28■□□□□ 0.2
CCDC88A-204ENST00000413716 CCDC43Q96MW1 224 aaKnown RBP16.28■□□□□ 0.2
CCDC88A-204ENST00000413716 TRIM29Q14134 588 aa16.28■□□□□ 0.2
CCDC88A-204ENST00000413716 GOLGA6L10A6NI86 522 aa16.27■□□□□ 0.2
CCDC88A-204ENST00000413716 RCAN3Q9UKA8 241 aa16.27■□□□□ 0.2
CCDC88A-204ENST00000413716 FRAT2O75474 233 aaPredicted RBP16.27■□□□□ 0.2
CCDC88A-204ENST00000413716 FAM43AQ8N2R8 423 aa16.27■□□□□ 0.2
CCDC88A-204ENST00000413716 CLASRPQ8N2M8 674 aaKnown RBP16.27■□□□□ 0.2
CCDC88A-204ENST00000413716 DIAPH3Q9NSV4 1193 aa16.27■□□□□ 0.19
CCDC88A-204ENST00000413716 SYNE3Q6ZMZ3 975 aa16.27■□□□□ 0.19
CCDC88A-204ENST00000413716 PODXL2Q9NZ53 605 aa16.26■□□□□ 0.19
CCDC88A-204ENST00000413716 AMOTL1Q8IY63 956 aa16.26■□□□□ 0.19
CCDC88A-204ENST00000413716 TRIM34Q9BYJ4 488 aa16.25■□□□□ 0.19
CCDC88A-204ENST00000413716 SOX12O15370 315 aa16.25■□□□□ 0.19
CCDC88A-204ENST00000413716 CTDP1Q9Y5B0 961 aaPredicted RBP16.25■□□□□ 0.19
CCDC88A-204ENST00000413716 NAT10Q9H0A0 1025 aaKnown RBP16.25■□□□□ 0.19
CCDC88A-204ENST00000413716 LRRFIP1Q32MZ4 808 aaKnown RBP16.24■□□□□ 0.19
CCDC88A-204ENST00000413716 ZFYVE27Q5T4F4 411 aa16.24■□□□□ 0.19
CCDC88A-204ENST00000413716 ENOX2Q16206 610 aaKnown RBP16.24■□□□□ 0.19
CCDC88A-204ENST00000413716 EZRP15311 586 aaKnown RBP16.24■□□□□ 0.19
CCDC88A-204ENST00000413716 USP8P40818 1118 aa16.24■□□□□ 0.19
CCDC88A-204ENST00000413716 SEPT7Q16181 437 aaKnown RBP16.24■□□□□ 0.19
CCDC88A-204ENST00000413716 TAF3Q5VWG9 929 aa16.24■□□□□ 0.19
CCDC88A-204ENST00000413716 KAT6BQ8WYB5 2073 aa16.24■□□□□ 0.19
CCDC88A-204ENST00000413716 SRPK2P78362 688 aaKnown RBP16.24■□□□□ 0.19
CCDC88A-204ENST00000413716 CLIP1P30622 1438 aa16.23■□□□□ 0.19
CCDC88A-204ENST00000413716 ERLIN2O94905 339 aa16.23■□□□□ 0.19
CCDC88A-204ENST00000413716 KANK1Q14678 1352 aa16.22■□□□□ 0.19
CCDC88A-204ENST00000413716 AXDND1Q5T1B0 1012 aaPredicted RBP16.22■□□□□ 0.19
CCDC88A-204ENST00000413716 ZCCHC6Q5VYS8 1495 aaKnown RBP16.21■□□□□ 0.18
CCDC88A-204ENST00000413716 SASS6Q6UVJ0 657 aa16.2■□□□□ 0.18
CCDC88A-204ENST00000413716 CPLX2Q6PUV4 134 aaKnown RBP16.2■□□□□ 0.18
CCDC88A-204ENST00000413716 DEF6Q9H4E7 631 aa16.2■□□□□ 0.18
CCDC88A-204ENST00000413716 CCP110O43303 1012 aa16.2■□□□□ 0.18
CCDC88A-204ENST00000413716 SMC4Q9NTJ3 1288 aa16.2■□□□□ 0.18
CCDC88A-204ENST00000413716 CT47B1P0C2W7 299 aaPredicted RBP16.2■□□□□ 0.18
CCDC88A-204ENST00000413716 FOXD4L6Q3SYB3 417 aaPredicted RBP16.19■□□□□ 0.18
CCDC88A-204ENST00000413716 FOXD4L3Q6VB84 417 aaPredicted RBP16.19■□□□□ 0.18
CCDC88A-204ENST00000413716 GIMAP7Q8NHV1 300 aa16.19■□□□□ 0.18
CCDC88A-204ENST00000413716 R3HCC1Q9Y3T6 440 aaKnown RBP16.19■□□□□ 0.18
CCDC88A-204ENST00000413716 NOL10Q9BSC4 688 aaKnown RBP16.19■□□□□ 0.18
CCDC88A-204ENST00000413716 SEPT11Q9NVA2 429 aaKnown RBP16.19■□□□□ 0.18
CCDC88A-204ENST00000413716 CCAR1Q8IX12 1150 aaKnown RBP16.19■□□□□ 0.18
CCDC88A-204ENST00000413716 OFD1O75665 1012 aa16.19■□□□□ 0.18
CCDC88A-204ENST00000413716 CGNL1Q0VF96 1302 aa16.18■□□□□ 0.18
CCDC88A-204ENST00000413716 CCDC39Q9UFE4 941 aa16.18■□□□□ 0.18
CCDC88A-204ENST00000413716 HDGFP51858 240 aaKnown RBP16.18■□□□□ 0.18
CCDC88A-204ENST00000413716 BICD2Q8TD16 824 aa16.18■□□□□ 0.18
CCDC88A-204ENST00000413716 CCER2I3L3R5 266 aa16.17■□□□□ 0.18
CCDC88A-204ENST00000413716 OLFM4Q6UX06 510 aa16.16■□□□□ 0.18
CCDC88A-204ENST00000413716 ANKRD62A6NC57 917 aa16.16■□□□□ 0.18
CCDC88A-204ENST00000413716 PAF1Q8N7H5 531 aa16.16■□□□□ 0.18
CCDC88A-204ENST00000413716 SKIDA1Q1XH10 827 aa16.16■□□□□ 0.18
CCDC88A-204ENST00000413716 EIF3AQ14152 1382 aaKnown RBP16.16■□□□□ 0.18
CCDC88A-204ENST00000413716 HDGFL2Q7Z4V5 671 aaPredicted RBP16.16■□□□□ 0.18
CCDC88A-204ENST00000413716 GBP2P32456 591 aaPredicted RBP16.15■□□□□ 0.18
CCDC88A-204ENST00000413716 RAD21O60216 631 aa16.14■□□□□ 0.17
CCDC88A-204ENST00000413716 KCNH8Q96L42 1107 aa16.14■□□□□ 0.17
CCDC88A-204ENST00000413716 CPLX1O14810 134 aa16.14■□□□□ 0.17
CCDC88A-204ENST00000413716 BCCIPQ9P287 314 aaKnown RBP eCLIP16.14■□□□□ 0.17
CCDC88A-204ENST00000413716 NF2P35240 595 aa16.14■□□□□ 0.17
CCDC88A-204ENST00000413716 SLC4A10Q6U841 1118 aa16.13■□□□□ 0.17
CCDC88A-204ENST00000413716 RABEP1Q15276 862 aa16.13■□□□□ 0.17
CCDC88A-204ENST00000413716 CSB-PGBD3P0DP91 1061 aa16.13■□□□□ 0.17
CCDC88A-204ENST00000413716 RILPL2Q969X0 211 aa16.13■□□□□ 0.17
CCDC88A-204ENST00000413716 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.12■□□□□ 0.17
CCDC88A-204ENST00000413716 PDILTQ8N807 584 aa16.12■□□□□ 0.17
CCDC88A-204ENST00000413716 RALBP1Q15311 655 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms