RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 TEX14Q8IWB6 1497 aa20.41■□□□□ 0.86
GPNMB-203ENST00000409458 MYT1LQ9UL68 1186 aa20.41■□□□□ 0.86
GPNMB-203ENST00000409458 PKD2Q13563 968 aa20.39■□□□□ 0.86
GPNMB-203ENST00000409458 TIMELESSQ9UNS1 1208 aa20.39■□□□□ 0.86
GPNMB-203ENST00000409458 RAPGEF3O95398 923 aa20.38■□□□□ 0.85
GPNMB-203ENST00000409458 DHX29Q7Z478 1369 aaKnown RBP20.38■□□□□ 0.85
GPNMB-203ENST00000409458 TONSLQ96HA7 1378 aa20.38■□□□□ 0.85
GPNMB-203ENST00000409458 A2MP01023 1474 aa20.36■□□□□ 0.85
GPNMB-203ENST00000409458 RPRD2Q5VT52 1461 aaKnown RBP20.36■□□□□ 0.85
GPNMB-203ENST00000409458 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.35■□□□□ 0.85
GPNMB-203ENST00000409458 DIP2CQ9Y2E4 1556 aa20.35■□□□□ 0.85
GPNMB-203ENST00000409458 MROH1Q8NDA8 1641 aa20.35■□□□□ 0.85
GPNMB-203ENST00000409458 ZMYM4Q5VZL5 1548 aa20.34■□□□□ 0.85
GPNMB-203ENST00000409458 PRDM15P57071 1507 aaPredicted RBP20.33■□□□□ 0.85
GPNMB-203ENST00000409458 VWDEQ8N2E2 1590 aa20.32■□□□□ 0.84
GPNMB-203ENST00000409458 RNF17Q9BXT8 1623 aaKnown RBP20.31■□□□□ 0.84
GPNMB-203ENST00000409458 BCORL1Q5H9F3 1711 aa20.31■□□□□ 0.84
GPNMB-203ENST00000409458 KIF3BO15066 747 aa20.29■□□□□ 0.84
GPNMB-203ENST00000409458 PPP1R15AO75807 674 aaPredicted RBP20.29■□□□□ 0.84
GPNMB-203ENST00000409458 YEATS2Q9ULM3 1422 aa20.28■□□□□ 0.84
GPNMB-203ENST00000409458 E9PCH4 1651 aa20.27■□□□□ 0.84
GPNMB-203ENST00000409458 TET3O43151 1660 aa20.27■□□□□ 0.84
GPNMB-203ENST00000409458 ZNF316A6NFI3 1004 aaPredicted RBP20.25■□□□□ 0.83
GPNMB-203ENST00000409458 PLA2R1Q13018 1463 aa20.24■□□□□ 0.83
GPNMB-203ENST00000409458 KANK1Q14678 1352 aa20.24■□□□□ 0.83
GPNMB-203ENST00000409458 COL17A1Q9UMD9 1497 aaPredicted RBP20.23■□□□□ 0.83
GPNMB-203ENST00000409458 DNAJC5Q9H3Z4 198 aa20.23■□□□□ 0.83
GPNMB-203ENST00000409458 CEP152O94986 1710 aa20.23■□□□□ 0.83
GPNMB-203ENST00000409458 L3MBTL2Q969R5 705 aa20.22■□□□□ 0.83
GPNMB-203ENST00000409458 LMTK2Q8IWU2 1503 aa20.21■□□□□ 0.83
GPNMB-203ENST00000409458 ATP10AO60312 1499 aa20.2■□□□□ 0.82
GPNMB-203ENST00000409458 EFCAB6Q5THR3 1501 aa20.19■□□□□ 0.82
GPNMB-203ENST00000409458 SPHKAPQ2M3C7 1700 aa20.19■□□□□ 0.82
GPNMB-203ENST00000409458 CCDC144AA2RUR9 1427 aa20.18■□□□□ 0.82
GPNMB-203ENST00000409458 REREQ9P2R6 1566 aa20.17■□□□□ 0.82
GPNMB-203ENST00000409458 ARHGEF40Q8TER5 1519 aa20.17■□□□□ 0.82
GPNMB-203ENST00000409458 TRPM2O94759 1503 aa20.16■□□□□ 0.82
GPNMB-203ENST00000409458 ABCC3O15438 1527 aa20.15■□□□□ 0.82
GPNMB-203ENST00000409458 PTPRTO14522 1441 aa20.14■□□□□ 0.81
GPNMB-203ENST00000409458 SIGLEC1Q9BZZ2 1709 aa20.14■□□□□ 0.81
GPNMB-203ENST00000409458 GGT6Q6P531 493 aa20.13■□□□□ 0.81
GPNMB-203ENST00000409458 ZC3H13Q5T200 1668 aaKnown RBP20.12■□□□□ 0.81
GPNMB-203ENST00000409458 CAMSAP1Q5T5Y3 1602 aa20.12■□□□□ 0.81
GPNMB-203ENST00000409458 CLTCL1P53675 1640 aa20.11■□□□□ 0.81
GPNMB-203ENST00000409458 AGLP35573 1532 aa20.1■□□□□ 0.81
GPNMB-203ENST00000409458 TRHP20396 242 aaPredicted RBP20.08■□□□□ 0.81
GPNMB-203ENST00000409458 NBPF8Q3BBV2 869 aa20.08■□□□□ 0.81
GPNMB-203ENST00000409458 NPATQ14207 1427 aa20.07■□□□□ 0.8
GPNMB-203ENST00000409458 UHRF1BP1Q6BDS2 1440 aa20.05■□□□□ 0.8
GPNMB-203ENST00000409458 WASHC2CQ9Y4E1 1318 aa20.05■□□□□ 0.8
GPNMB-203ENST00000409458 UGGT1Q9NYU2 1555 aa20.05■□□□□ 0.8
GPNMB-203ENST00000409458 SPATA31E1Q6ZUB1 1445 aa20.04■□□□□ 0.8
GPNMB-203ENST00000409458 DIEXFQ68CQ4 756 aaKnown RBP20.02■□□□□ 0.8
GPNMB-203ENST00000409458 CFAP65Q6ZU64 1925 aaKnown RBP20■□□□□ 0.79
GPNMB-203ENST00000409458 DCAF11Q8TEB1 546 aa20■□□□□ 0.79
GPNMB-203ENST00000409458 ARHGAP31Q2M1Z3 1444 aa20■□□□□ 0.79
GPNMB-203ENST00000409458 NEURL4Q96JN8 1562 aa19.99■□□□□ 0.79
GPNMB-203ENST00000409458 RGL3Q3MIN7 710 aa19.99■□□□□ 0.79
GPNMB-203ENST00000409458 KIF1BO60333 1816 aa19.98■□□□□ 0.79
GPNMB-203ENST00000409458 MROH2AA6NES4 1674 aa19.98■□□□□ 0.79
GPNMB-203ENST00000409458 RALGAPBQ86X10 1494 aa19.98■□□□□ 0.79
GPNMB-203ENST00000409458 CNTLNQ9NXG0 1405 aa19.98■□□□□ 0.79
GPNMB-203ENST00000409458 ZNF326Q5BKZ1 582 aaKnown RBP19.98■□□□□ 0.79
GPNMB-203ENST00000409458 KDM2AQ9Y2K7 1162 aa19.97■□□□□ 0.79
GPNMB-203ENST00000409458 CLTCQ00610 1675 aaKnown RBP19.97■□□□□ 0.79
GPNMB-203ENST00000409458 HIRIP3Q9BW71 556 aaPredicted RBP19.97■□□□□ 0.79
GPNMB-203ENST00000409458 SYNMO15061 1565 aa19.97■□□□□ 0.79
GPNMB-203ENST00000409458 NOS1P29475 1434 aa19.96■□□□□ 0.79
GPNMB-203ENST00000409458 PRAG1Q86YV5 1406 aa19.96■□□□□ 0.79
GPNMB-203ENST00000409458 PREX1Q8TCU6 1659 aa19.95■□□□□ 0.78
GPNMB-203ENST00000409458 PIK3C2BO00750 1634 aa19.95■□□□□ 0.78
GPNMB-203ENST00000409458 TRPM1Q7Z4N2 1603 aa19.95■□□□□ 0.78
GPNMB-203ENST00000409458 ADGRB3O60242 1522 aa19.95■□□□□ 0.78
GPNMB-203ENST00000409458 HSPA5P11021 654 aaKnown RBP19.93■□□□□ 0.78
GPNMB-203ENST00000409458 MADDQ8WXG6 1647 aa19.92■□□□□ 0.78
GPNMB-203ENST00000409458 IFT172Q9UG01 1749 aa19.92■□□□□ 0.78
GPNMB-203ENST00000409458 EIF4G2P78344 907 aaKnown RBP eCLIP19.91■□□□□ 0.78
GPNMB-203ENST00000409458 MLECQ14165 292 aa19.91■□□□□ 0.78
GPNMB-203ENST00000409458 PPP6R1Q9UPN7 881 aa19.91■□□□□ 0.78
GPNMB-203ENST00000409458 ERVK-7P63135 1459 aa19.87■□□□□ 0.77
GPNMB-203ENST00000409458 USP47Q96K76 1375 aa19.86■□□□□ 0.77
GPNMB-203ENST00000409458 LAMC1P11047 1609 aa19.85■□□□□ 0.77
GPNMB-203ENST00000409458 MYOM2P54296 1465 aa19.85■□□□□ 0.77
GPNMB-203ENST00000409458 ROCK2O75116 1388 aaKnown RBP19.85■□□□□ 0.77
GPNMB-203ENST00000409458 ARID4BQ4LE39 1312 aaPredicted RBP19.84■□□□□ 0.77
GPNMB-203ENST00000409458 PPLO60437 1756 aa19.84■□□□□ 0.77
GPNMB-203ENST00000409458 SPATA31D1Q6ZQQ2 1576 aa19.84■□□□□ 0.77
GPNMB-203ENST00000409458 CARD11Q9BXL7 1154 aa19.82■□□□□ 0.76
GPNMB-203ENST00000409458 GPRASP1Q5JY77 1395 aa19.82■□□□□ 0.76
GPNMB-203ENST00000409458 FBXO31Q5XUX0 539 aaPredicted RBP19.81■□□□□ 0.76
GPNMB-203ENST00000409458 CHGAP10645 457 aaKnown RBP19.81■□□□□ 0.76
GPNMB-203ENST00000409458 POLR1AO95602 1720 aaPredicted RBP19.8■□□□□ 0.76
GPNMB-203ENST00000409458 MYO5BQ9ULV0 1848 aa19.8■□□□□ 0.76
GPNMB-203ENST00000409458 STAC3Q96MF2 364 aa19.8■□□□□ 0.76
GPNMB-203ENST00000409458 TMEM131LA2VDJ0 1609 aa19.79■□□□□ 0.76
GPNMB-203ENST00000409458 NRXN1Q9ULB1 1477 aa19.79■□□□□ 0.76
GPNMB-203ENST00000409458 NBPF1Q3BBV0 1214 aa19.79■□□□□ 0.76
GPNMB-203ENST00000409458 KIAA1210Q9ULL0 1709 aa19.79■□□□□ 0.76
GPNMB-203ENST00000409458 IDI1Q13907 227 aa19.78■□□□□ 0.76
GPNMB-203ENST00000409458 SLC52A1Q9NWF4 448 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms