RNA–Protein interactions for RNA: ENST00000406134.5

MSH2-202, Transcript of mutS homolog 2, humanhuman

TSL 1 (best) BASIC

Gene MSH2, Length 3,628 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-202ENST00000406134 A2MP01023 1474 aa13.6□□□□□ -0.23
MSH2-202ENST00000406134 NEFLP07196 543 aa13.6□□□□□ -0.23
MSH2-202ENST00000406134 CLASP1Q7Z460 1538 aa13.59□□□□□ -0.23
MSH2-202ENST00000406134 FAM9BQ8IZU0 186 aa13.59□□□□□ -0.23
MSH2-202ENST00000406134 ARID4BQ4LE39 1312 aaPredicted RBP13.59□□□□□ -0.23
MSH2-202ENST00000406134 ARHGAP5Q13017 1502 aa13.58□□□□□ -0.24
MSH2-202ENST00000406134 SMG6Q86US8 1419 aaKnown RBP13.57□□□□□ -0.24
MSH2-202ENST00000406134 ABCC1P33527 1531 aa13.57□□□□□ -0.24
MSH2-202ENST00000406134 LRPPRCP42704 1394 aaKnown RBP13.56□□□□□ -0.24
MSH2-202ENST00000406134 ATP10AO60312 1499 aa13.56□□□□□ -0.24
MSH2-202ENST00000406134 MSH5O43196 834 aa13.56□□□□□ -0.24
MSH2-202ENST00000406134 DEPDC5O75140 1603 aa13.56□□□□□ -0.24
MSH2-202ENST00000406134 IQGAP1P46940 1657 aa13.56□□□□□ -0.24
MSH2-202ENST00000406134 CEP152O94986 1710 aa13.56□□□□□ -0.24
MSH2-202ENST00000406134 RNF123Q5XPI4 1314 aa13.56□□□□□ -0.24
MSH2-202ENST00000406134 BCL11AQ9H165 835 aa13.55□□□□□ -0.24
MSH2-202ENST00000406134 GPRASP1Q5JY77 1395 aa13.55□□□□□ -0.24
MSH2-202ENST00000406134 PLEKHH2Q8IVE3 1493 aa13.54□□□□□ -0.24
MSH2-202ENST00000406134 SPHKAPQ2M3C7 1700 aa13.54□□□□□ -0.24
MSH2-202ENST00000406134 MADDQ8WXG6 1647 aa13.54□□□□□ -0.24
MSH2-202ENST00000406134 ANP32EQ9BTT0 268 aa13.54□□□□□ -0.24
MSH2-202ENST00000406134 DUOX2Q9NRD8 1548 aa13.54□□□□□ -0.24
MSH2-202ENST00000406134 ZNF326Q5BKZ1 582 aaKnown RBP13.53□□□□□ -0.24
MSH2-202ENST00000406134 COL17A1Q9UMD9 1497 aaPredicted RBP13.53□□□□□ -0.24
MSH2-202ENST00000406134 EIF2AK4Q9P2K8 1649 aaKnown RBP13.53□□□□□ -0.24
MSH2-202ENST00000406134 PNISRQ8TF01 805 aaKnown RBP13.52□□□□□ -0.24
MSH2-202ENST00000406134 ERICH6BQ5W0A0 696 aa13.52□□□□□ -0.25
MSH2-202ENST00000406134 ROCK2O75116 1388 aaKnown RBP13.52□□□□□ -0.25
MSH2-202ENST00000406134 ST20-MTHFSA0A0A6YYL1 179 aa13.52□□□□□ -0.25
MSH2-202ENST00000406134 MYOM1P52179 1685 aa13.52□□□□□ -0.25
MSH2-202ENST00000406134 PRKCSHP14314 528 aaPredicted RBP13.51□□□□□ -0.25
MSH2-202ENST00000406134 ZFYVE16Q7Z3T8 1539 aa13.5□□□□□ -0.25
MSH2-202ENST00000406134 TSPY4P0CV99 314 aa13.5□□□□□ -0.25
MSH2-202ENST00000406134 TSPY10P0CW01 314 aa13.5□□□□□ -0.25
MSH2-202ENST00000406134 CARD11Q9BXL7 1154 aa13.5□□□□□ -0.25
MSH2-202ENST00000406134 ERBINQ96RT1 1412 aa13.5□□□□□ -0.25
MSH2-202ENST00000406134 UHRF1BP1LA0JNW5 1464 aa13.5□□□□□ -0.25
MSH2-202ENST00000406134 PARD3Q8TEW0 1356 aa13.49□□□□□ -0.25
MSH2-202ENST00000406134 DCAF11Q8TEB1 546 aa13.49□□□□□ -0.25
MSH2-202ENST00000406134 CLTCL1P53675 1640 aa13.48□□□□□ -0.25
MSH2-202ENST00000406134 CCDC144AA2RUR9 1427 aa13.48□□□□□ -0.25
MSH2-202ENST00000406134 PPP4R2Q9NY27 417 aa13.48□□□□□ -0.25
MSH2-202ENST00000406134 ABCA9Q8IUA7 1624 aa13.48□□□□□ -0.25
MSH2-202ENST00000406134 INO80Q9ULG1 1556 aaPredicted RBP13.48□□□□□ -0.25
MSH2-202ENST00000406134 PLCH2O75038 1416 aa13.48□□□□□ -0.25
MSH2-202ENST00000406134 VWDEQ8N2E2 1590 aa13.47□□□□□ -0.25
MSH2-202ENST00000406134 DISP3Q9P2K9 1392 aa13.47□□□□□ -0.25
MSH2-202ENST00000406134 MROH1Q8NDA8 1641 aa13.47□□□□□ -0.25
MSH2-202ENST00000406134 NBPF1Q3BBV0 1214 aa13.47□□□□□ -0.25
MSH2-202ENST00000406134 IFT172Q9UG01 1749 aa13.47□□□□□ -0.25
MSH2-202ENST00000406134 TRAPPC8Q9Y2L5 1435 aa13.47□□□□□ -0.25
MSH2-202ENST00000406134 PER1O15534 1290 aaPredicted RBP13.46□□□□□ -0.25
MSH2-202ENST00000406134 TESK2Q96S53 571 aa13.46□□□□□ -0.25
MSH2-202ENST00000406134 KDM2AQ9Y2K7 1162 aa13.46□□□□□ -0.25
MSH2-202ENST00000406134 TRPM2O94759 1503 aa13.46□□□□□ -0.26
MSH2-202ENST00000406134 RSPH4AQ5TD94 716 aa13.45□□□□□ -0.26
MSH2-202ENST00000406134 ARAP3Q8WWN8 1544 aa13.45□□□□□ -0.26
MSH2-202ENST00000406134 BRD4O60885 1362 aaPredicted RBP13.45□□□□□ -0.26
MSH2-202ENST00000406134 B4GALNT3Q6L9W6 998 aa13.45□□□□□ -0.26
MSH2-202ENST00000406134 NUDCQ9Y266 331 aa13.44□□□□□ -0.26
MSH2-202ENST00000406134 KTN1Q86UP2 1357 aaKnown RBP13.44□□□□□ -0.26
MSH2-202ENST00000406134 TET3O43151 1660 aa13.44□□□□□ -0.26
MSH2-202ENST00000406134 FANCIQ9NVI1 1328 aa13.44□□□□□ -0.26
MSH2-202ENST00000406134 SENP3-EIF4A1A0A087X0R7 540 aa13.43□□□□□ -0.26
MSH2-202ENST00000406134 MYBBP1AQ9BQG0 1328 aaKnown RBP13.42□□□□□ -0.26
MSH2-202ENST00000406134 KIAA1210Q9ULL0 1709 aa13.42□□□□□ -0.26
MSH2-202ENST00000406134 MROH2AA6NES4 1674 aa13.42□□□□□ -0.26
MSH2-202ENST00000406134 WDR7Q9Y4E6 1490 aa13.41□□□□□ -0.26
MSH2-202ENST00000406134 CNGB1Q14028 1251 aaPredicted RBP13.41□□□□□ -0.26
MSH2-202ENST00000406134 POLR3GLQ9BT43 218 aa13.41□□□□□ -0.26
MSH2-202ENST00000406134 ZMYM4Q5VZL5 1548 aa13.4□□□□□ -0.26
MSH2-202ENST00000406134 BLMP54132 1417 aaPredicted RBP13.4□□□□□ -0.26
MSH2-202ENST00000406134 PTPRTO14522 1441 aa13.4□□□□□ -0.26
MSH2-202ENST00000406134 NEURL4Q96JN8 1562 aa13.39□□□□□ -0.27
MSH2-202ENST00000406134 SYNMO15061 1565 aa13.38□□□□□ -0.27
MSH2-202ENST00000406134 RALBP1Q15311 655 aa13.37□□□□□ -0.27
MSH2-202ENST00000406134 ABCA6Q8N139 1617 aa13.37□□□□□ -0.27
MSH2-202ENST00000406134 KIDINS220Q9ULH0 1771 aa13.37□□□□□ -0.27
MSH2-202ENST00000406134 RTEL1-TNFRSF6BF6WH68 1400 aa13.37□□□□□ -0.27
MSH2-202ENST00000406134 ATP7AQ04656 1500 aa13.36□□□□□ -0.27
MSH2-202ENST00000406134 RGL3Q3MIN7 710 aa13.36□□□□□ -0.27
MSH2-202ENST00000406134 ZC3H13Q5T200 1668 aaKnown RBP13.36□□□□□ -0.27
MSH2-202ENST00000406134 PPRC1Q5VV67 1664 aaKnown RBP13.35□□□□□ -0.27
MSH2-202ENST00000406134 UGGT1Q9NYU2 1555 aa13.35□□□□□ -0.27
MSH2-202ENST00000406134 MYO3AQ8NEV4 1616 aa13.34□□□□□ -0.27
MSH2-202ENST00000406134 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.34□□□□□ -0.276e-7■□□□□ 9.5
MSH2-202ENST00000406134 MAP3K4Q9Y6R4 1608 aa13.34□□□□□ -0.27
MSH2-202ENST00000406134 INSRP06213 1382 aa13.34□□□□□ -0.27
MSH2-202ENST00000406134 TMC1Q8TDI8 760 aa13.34□□□□□ -0.27
MSH2-202ENST00000406134 KIF1BO60333 1816 aa13.33□□□□□ -0.28
MSH2-202ENST00000406134 SCAPERQ9BY12 1400 aa13.32□□□□□ -0.28
MSH2-202ENST00000406134 KDM5AP29375 1690 aaKnown RBP13.32□□□□□ -0.28
MSH2-202ENST00000406134 NLRP13Q86W25 1043 aa13.31□□□□□ -0.28
MSH2-202ENST00000406134 EFCAB6Q5THR3 1501 aa13.3□□□□□ -0.28
MSH2-202ENST00000406134 PPLO60437 1756 aa13.29□□□□□ -0.28
MSH2-202ENST00000406134 WASHC2CQ9Y4E1 1318 aa13.29□□□□□ -0.28
MSH2-202ENST00000406134 PANK3Q9H999 370 aa13.28□□□□□ -0.28
MSH2-202ENST00000406134 NRXN1Q9ULB1 1477 aa13.28□□□□□ -0.28
MSH2-202ENST00000406134 FRMPD1Q5SYB0 1578 aa13.28□□□□□ -0.28
MSH2-202ENST00000406134 AFAP1Q8N556 730 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms