RNA–Protein interactions for RNA: ENST00000405578.8

RPAIN-204, Transcript of RPA interacting protein, humanhuman

TSL 2 BASIC

Gene RPAIN, Length 1,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-204ENST00000405578 ZNF777Q9ULD5 760 aaPredicted RBP16.44■□□□□ 0.22
RPAIN-204ENST00000405578 GGT6Q6P531 493 aa16.42■□□□□ 0.22
RPAIN-204ENST00000405578 VWDEQ8N2E2 1590 aa16.42■□□□□ 0.22
RPAIN-204ENST00000405578 HNRNPMP52272 730 aaKnown RBP eCLIP16.4■□□□□ 0.22
RPAIN-204ENST00000405578 MAP3K1Q13233 1512 aa16.4■□□□□ 0.22
RPAIN-204ENST00000405578 GPATCH8Q9UKJ3 1502 aaKnown RBP16.39■□□□□ 0.21
RPAIN-204ENST00000405578 STRCP1A6NGW2 1772 aa16.38■□□□□ 0.21
RPAIN-204ENST00000405578 PLEKHH2Q8IVE3 1493 aa16.36■□□□□ 0.21
RPAIN-204ENST00000405578 TIAM1Q13009 1591 aa16.36■□□□□ 0.21
RPAIN-204ENST00000405578 RNF17Q9BXT8 1623 aaKnown RBP16.36■□□□□ 0.21
RPAIN-204ENST00000405578 IQGAP1P46940 1657 aa16.36■□□□□ 0.21
RPAIN-204ENST00000405578 KIAA1107Q9UPP5 1409 aa16.36■□□□□ 0.21
RPAIN-204ENST00000405578 TNRQ92752 1358 aa16.35■□□□□ 0.21
RPAIN-204ENST00000405578 DEPDC5O75140 1603 aa16.34■□□□□ 0.21
RPAIN-204ENST00000405578 LRRC9Q6ZRR7 1453 aa16.34■□□□□ 0.21
RPAIN-204ENST00000405578 EHBP1L1Q8N3D4 1523 aa16.34■□□□□ 0.21
RPAIN-204ENST00000405578 SYNMO15061 1565 aa16.33■□□□□ 0.2
RPAIN-204ENST00000405578 KANK4Q5T7N3 995 aaPredicted RBP16.32■□□□□ 0.2
RPAIN-204ENST00000405578 PZPP20742 1482 aa16.31■□□□□ 0.2
RPAIN-204ENST00000405578 NPHP4O75161 1426 aaPredicted RBP16.31■□□□□ 0.2
RPAIN-204ENST00000405578 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.31■□□□□ 0.2
RPAIN-204ENST00000405578 KDM5DQ9BY66 1539 aa16.3■□□□□ 0.2
RPAIN-204ENST00000405578 FBXO31Q5XUX0 539 aaPredicted RBP16.3■□□□□ 0.2
RPAIN-204ENST00000405578 ANKLE2Q86XL3 938 aa16.3■□□□□ 0.2
RPAIN-204ENST00000405578 UGGT1Q9NYU2 1555 aa16.3■□□□□ 0.2
RPAIN-204ENST00000405578 MED14O60244 1454 aa16.29■□□□□ 0.2
RPAIN-204ENST00000405578 CCNB3Q8WWL7 1395 aa16.29■□□□□ 0.2
RPAIN-204ENST00000405578 CFDP1Q9UEE9 299 aaPredicted RBP16.29■□□□□ 0.2
RPAIN-204ENST00000405578 LRRC7Q96NW7 1537 aa16.29■□□□□ 0.2
RPAIN-204ENST00000405578 FAM135AQ9P2D6 1515 aa16.28■□□□□ 0.2
RPAIN-204ENST00000405578 NLRP1Q9C000 1473 aa16.27■□□□□ 0.19
RPAIN-204ENST00000405578 RGS17Q9UGC6 210 aaPredicted RBP16.26■□□□□ 0.19
RPAIN-204ENST00000405578 ZC3H13Q5T200 1668 aaKnown RBP16.26■□□□□ 0.19
RPAIN-204ENST00000405578 XIRP1Q702N8 1843 aaKnown RBP16.26■□□□□ 0.19
RPAIN-204ENST00000405578 NCOA2Q15596 1464 aa16.25■□□□□ 0.19
RPAIN-204ENST00000405578 THEMISQ8N1K5 641 aaPredicted RBP16.24■□□□□ 0.19
RPAIN-204ENST00000405578 DHX29Q7Z478 1369 aaKnown RBP16.24■□□□□ 0.19
RPAIN-204ENST00000405578 MBD5Q9P267 1494 aa16.23■□□□□ 0.19
RPAIN-204ENST00000405578 SETD1AO15047 1707 aaKnown RBP16.23■□□□□ 0.19
RPAIN-204ENST00000405578 ZNF644Q9H582 1327 aaPredicted RBP16.22■□□□□ 0.19
RPAIN-204ENST00000405578 RTEL1-TNFRSF6BF6WH68 1400 aa16.22■□□□□ 0.19
RPAIN-204ENST00000405578 MIA2Q96PC5 1412 aa16.22■□□□□ 0.19
RPAIN-204ENST00000405578 KIF3BO15066 747 aa16.22■□□□□ 0.19
RPAIN-204ENST00000405578 CFAP65Q6ZU64 1925 aaKnown RBP16.2■□□□□ 0.18
RPAIN-204ENST00000405578 PPARGC1BQ86YN6 1023 aaKnown RBP16.19■□□□□ 0.18
RPAIN-204ENST00000405578 WASHC2CQ9Y4E1 1318 aa16.19■□□□□ 0.18
RPAIN-204ENST00000405578 UBR1Q8IWV7 1749 aa16.18■□□□□ 0.18
RPAIN-204ENST00000405578 MYOM3Q5VTT5 1437 aa16.17■□□□□ 0.18
RPAIN-204ENST00000405578 CCDC141Q6ZP82 1450 aa16.16■□□□□ 0.18
RPAIN-204ENST00000405578 POTEAQ6S8J7 498 aa16.15■□□□□ 0.18
RPAIN-204ENST00000405578 CEP152O94986 1710 aa16.14■□□□□ 0.17
RPAIN-204ENST00000405578 ABCC3O15438 1527 aa16.14■□□□□ 0.17
RPAIN-204ENST00000405578 ROBO1Q9Y6N7 1651 aa16.12■□□□□ 0.17
RPAIN-204ENST00000405578 ERVK-7P63135 1459 aa16.12■□□□□ 0.17
RPAIN-204ENST00000405578 CAMSAP2Q08AD1 1489 aa16.12■□□□□ 0.17
RPAIN-204ENST00000405578 SCAF11Q99590 1463 aaKnown RBP16.12■□□□□ 0.17
RPAIN-204ENST00000405578 RSPH4AQ5TD94 716 aa16.11■□□□□ 0.17
RPAIN-204ENST00000405578 FGD6Q6ZV73 1430 aa16.09■□□□□ 0.17
RPAIN-204ENST00000405578 FAM135BQ49AJ0 1406 aa16.08■□□□□ 0.16
RPAIN-204ENST00000405578 ARHGEF5Q12774 1597 aa16.08■□□□□ 0.16
RPAIN-204ENST00000405578 MROH1Q8NDA8 1641 aa16.08■□□□□ 0.16
RPAIN-204ENST00000405578 EIF2AK4Q9P2K8 1649 aaKnown RBP16.08■□□□□ 0.16
RPAIN-204ENST00000405578 FAM50AQ14320 339 aaKnown RBP16.07■□□□□ 0.16
RPAIN-204ENST00000405578 SLIT1O75093 1534 aa16.07■□□□□ 0.16
RPAIN-204ENST00000405578 ARHGAP23Q9P227 1491 aa16.06■□□□□ 0.16
RPAIN-204ENST00000405578 TSPY4P0CV99 314 aa16.05■□□□□ 0.16
RPAIN-204ENST00000405578 TSPY10P0CW01 314 aa16.05■□□□□ 0.16
RPAIN-204ENST00000405578 PHLPP1O60346 1717 aa16.05■□□□□ 0.16
RPAIN-204ENST00000405578 LTKP29376 864 aa16.04■□□□□ 0.16
RPAIN-204ENST00000405578 PIK3C2BO00750 1634 aa16.03■□□□□ 0.16
RPAIN-204ENST00000405578 MAST1Q9Y2H9 1570 aa16.02■□□□□ 0.16
RPAIN-204ENST00000405578 TXNDC2Q86VQ3 553 aa16.02■□□□□ 0.16
RPAIN-204ENST00000405578 TMEM94Q12767 1356 aa16.01■□□□□ 0.15
RPAIN-204ENST00000405578 PTPN23Q9H3S7 1636 aa15.99■□□□□ 0.15
RPAIN-204ENST00000405578 RRBP1Q9P2E9 1410 aaKnown RBP15.97■□□□□ 0.15
RPAIN-204ENST00000405578 EID1Q9Y6B2 187 aa15.97■□□□□ 0.15
RPAIN-204ENST00000405578 KDM5AP29375 1690 aaKnown RBP15.96■□□□□ 0.15
RPAIN-204ENST00000405578 COL16A1Q07092 1604 aaPredicted RBP15.96■□□□□ 0.15
RPAIN-204ENST00000405578 NWD1Q149M9 1564 aa15.96■□□□□ 0.14
RPAIN-204ENST00000405578 RBM33Q96EV2 1170 aaKnown RBP15.95■□□□□ 0.14
RPAIN-204ENST00000405578 PRDM15P57071 1507 aaPredicted RBP15.94■□□□□ 0.14
RPAIN-204ENST00000405578 JCADQ9P266 1359 aa15.94■□□□□ 0.14
RPAIN-204ENST00000405578 TMEM2Q9UHN6 1383 aa15.94■□□□□ 0.14
RPAIN-204ENST00000405578 NKTRP30414 1462 aaKnown RBP15.94■□□□□ 0.14
RPAIN-204ENST00000405578 EFCAB6Q5THR3 1501 aa15.94■□□□□ 0.14
RPAIN-204ENST00000405578 ABCC5O15440 1437 aa15.94■□□□□ 0.14
RPAIN-204ENST00000405578 DAPK1P53355 1430 aa15.94■□□□□ 0.14
RPAIN-204ENST00000405578 ITGAEP38570 1179 aa15.93■□□□□ 0.14
RPAIN-204ENST00000405578 PROSER2Q86WR7 435 aaPredicted RBP15.93■□□□□ 0.14
RPAIN-204ENST00000405578 UPF1Q92900 1129 aaKnown RBP eCLIP15.93■□□□□ 0.14
RPAIN-204ENST00000405578 LRP6O75581 1613 aa15.93■□□□□ 0.14
RPAIN-204ENST00000405578 TET3O43151 1660 aa15.92■□□□□ 0.14
RPAIN-204ENST00000405578 KCNA6P17658 529 aa15.92■□□□□ 0.14
RPAIN-204ENST00000405578 DUOX2Q9NRD8 1548 aa15.92■□□□□ 0.14
RPAIN-204ENST00000405578 ARHGAP31Q2M1Z3 1444 aa15.92■□□□□ 0.14
RPAIN-204ENST00000405578 TRIM52Q96A61 297 aa15.91■□□□□ 0.14
RPAIN-204ENST00000405578 MSH6P52701 1360 aa15.9■□□□□ 0.14
RPAIN-204ENST00000405578 SLC26A8Q96RN1 970 aa15.9■□□□□ 0.14
RPAIN-204ENST00000405578 CHIC2Q9UKJ5 165 aa15.9■□□□□ 0.14
RPAIN-204ENST00000405578 SHPRHQ149N8 1683 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 274.7 ms