RNA–Protein interactions for RNA: ENST00000402555.2

HMGB1P20-201, Transcript of high mobility group box 1 pseudogene 20, humanhuman

BASIC

Gene HMGB1P20, Length 677 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P20-201ENST00000402555 NCOA2Q15596 1464 aa9.15□□□□□ -0.95
HMGB1P20-201ENST00000402555 C9orf84Q5VXU9 1444 aa9.14□□□□□ -0.95
HMGB1P20-201ENST00000402555 HAX1O00165 279 aa9.14□□□□□ -0.95
HMGB1P20-201ENST00000402555 MLH3Q9UHC1 1453 aa9.14□□□□□ -0.95
HMGB1P20-201ENST00000402555 SUPT6HQ7KZ85 1726 aaKnown RBP9.14□□□□□ -0.95
HMGB1P20-201ENST00000402555 KANK4Q5T7N3 995 aaPredicted RBP9.13□□□□□ -0.95
HMGB1P20-201ENST00000402555 KIDINS220Q9ULH0 1771 aa9.13□□□□□ -0.95
HMGB1P20-201ENST00000402555 LRRC9Q6ZRR7 1453 aa9.12□□□□□ -0.95
HMGB1P20-201ENST00000402555 SPAG9O60271 1321 aaKnown RBP9.11□□□□□ -0.95
HMGB1P20-201ENST00000402555 PLEKHH2Q8IVE3 1493 aa9.11□□□□□ -0.95
HMGB1P20-201ENST00000402555 KIAA1107Q9UPP5 1409 aa9.11□□□□□ -0.95
HMGB1P20-201ENST00000402555 FER1L4A9Z1Z3 1794 aa9.11□□□□□ -0.95
HMGB1P20-201ENST00000402555 ATP7AQ04656 1500 aa9.1□□□□□ -0.95
HMGB1P20-201ENST00000402555 CAMSAP2Q08AD1 1489 aa9.09□□□□□ -0.95
HMGB1P20-201ENST00000402555 MBD5Q9P267 1494 aa9.09□□□□□ -0.95
HMGB1P20-201ENST00000402555 REREQ9P2R6 1566 aa9.09□□□□□ -0.95
HMGB1P20-201ENST00000402555 PRR29P0C7W0 189 aa9.09□□□□□ -0.95
HMGB1P20-201ENST00000402555 INO80Q9ULG1 1556 aaPredicted RBP9.08□□□□□ -0.96
HMGB1P20-201ENST00000402555 CEBPAP49715 358 aaPredicted RBP9.08□□□□□ -0.96
HMGB1P20-201ENST00000402555 MAP3K1Q13233 1512 aa9.08□□□□□ -0.96
HMGB1P20-201ENST00000402555 AGLP35573 1532 aa9.07□□□□□ -0.96
HMGB1P20-201ENST00000402555 EVX2Q03828 476 aa9.06□□□□□ -0.96
HMGB1P20-201ENST00000402555 A2MP01023 1474 aa9.05□□□□□ -0.96
HMGB1P20-201ENST00000402555 CCDC141Q6ZP82 1450 aa9.05□□□□□ -0.96
HMGB1P20-201ENST00000402555 LMTK3Q96Q04 1460 aa9.05□□□□□ -0.96
HMGB1P20-201ENST00000402555 SPDYE4A6NLX3 237 aa9.05□□□□□ -0.96
HMGB1P20-201ENST00000402555 CHADLQ6NUI6 762 aa9.05□□□□□ -0.96
HMGB1P20-201ENST00000402555 MYOM3Q5VTT5 1437 aa9.05□□□□□ -0.96
HMGB1P20-201ENST00000402555 PLXNC1O60486 1568 aa9.04□□□□□ -0.96
HMGB1P20-201ENST00000402555 HSPA2P54652 639 aa9.04□□□□□ -0.96
HMGB1P20-201ENST00000402555 ESF1Q9H501 851 aaKnown RBP9.03□□□□□ -0.96
HMGB1P20-201ENST00000402555 ADGBQ8N7X0 1667 aa9.03□□□□□ -0.96
HMGB1P20-201ENST00000402555 ARHGEF5Q12774 1597 aa9.03□□□□□ -0.96
HMGB1P20-201ENST00000402555 C3P01024 1663 aa9.02□□□□□ -0.97
HMGB1P20-201ENST00000402555 C19orf67A6NJJ6 358 aa9.02□□□□□ -0.97
HMGB1P20-201ENST00000402555 GGT6Q6P531 493 aa9.02□□□□□ -0.97
HMGB1P20-201ENST00000402555 RTEL1-TNFRSF6BF6WH68 1400 aa9.02□□□□□ -0.97
HMGB1P20-201ENST00000402555 MIA2Q96PC5 1412 aa9.01□□□□□ -0.97
HMGB1P20-201ENST00000402555 DHX29Q7Z478 1369 aaKnown RBP9□□□□□ -0.97
HMGB1P20-201ENST00000402555 TSPY4P0CV99 314 aa9□□□□□ -0.97
HMGB1P20-201ENST00000402555 TSPY10P0CW01 314 aa9□□□□□ -0.97
HMGB1P20-201ENST00000402555 RSPH4AQ5TD94 716 aa9□□□□□ -0.97
HMGB1P20-201ENST00000402555 CLTCQ00610 1675 aaKnown RBP9□□□□□ -0.97
HMGB1P20-201ENST00000402555 CNTLNQ9NXG0 1405 aa8.99□□□□□ -0.97
HMGB1P20-201ENST00000402555 PTPN23Q9H3S7 1636 aa8.99□□□□□ -0.97
HMGB1P20-201ENST00000402555 KIF3BO15066 747 aa8.99□□□□□ -0.97
HMGB1P20-201ENST00000402555 PREX1Q8TCU6 1659 aa8.99□□□□□ -0.97
HMGB1P20-201ENST00000402555 FGD6Q6ZV73 1430 aa8.98□□□□□ -0.97
HMGB1P20-201ENST00000402555 PPARGC1BQ86YN6 1023 aaKnown RBP8.98□□□□□ -0.97
HMGB1P20-201ENST00000402555 STAG3Q9UJ98 1225 aa8.98□□□□□ -0.97
HMGB1P20-201ENST00000402555 SETD1BQ9UPS6 1966 aaKnown RBP8.98□□□□□ -0.97
HMGB1P20-201ENST00000402555 MAST1Q9Y2H9 1570 aa8.98□□□□□ -0.97
HMGB1P20-201ENST00000402555 ZMYM3Q14202 1370 aa8.98□□□□□ -0.97
HMGB1P20-201ENST00000402555 MROH2AA6NES4 1674 aa8.97□□□□□ -0.97
HMGB1P20-201ENST00000402555 ABCC5O15440 1437 aa8.97□□□□□ -0.97
HMGB1P20-201ENST00000402555 UHRF1BP1Q6BDS2 1440 aa8.97□□□□□ -0.97
HMGB1P20-201ENST00000402555 CROCC2H7BZ55 1655 aa8.96□□□□□ -0.98
HMGB1P20-201ENST00000402555 TCOF1Q13428 1488 aaKnown RBP8.96□□□□□ -0.98
HMGB1P20-201ENST00000402555 CHIC2Q9UKJ5 165 aa8.95□□□□□ -0.98
HMGB1P20-201ENST00000402555 FARP1Q9Y4F1 1045 aaPredicted RBP8.95□□□□□ -0.98
HMGB1P20-201ENST00000402555 DAPK1P53355 1430 aa8.95□□□□□ -0.98
HMGB1P20-201ENST00000402555 DNMT1P26358 1616 aaKnown RBP8.94□□□□□ -0.98
HMGB1P20-201ENST00000402555 FAM50AQ14320 339 aaKnown RBP8.94□□□□□ -0.98
HMGB1P20-201ENST00000402555 RRP7BPQ9NSQ0 103 aa8.94□□□□□ -0.98
HMGB1P20-201ENST00000402555 NPATQ14207 1427 aa8.94□□□□□ -0.98
HMGB1P20-201ENST00000402555 PTPRKQ15262 1439 aa8.94□□□□□ -0.98
HMGB1P20-201ENST00000402555 FBXO31Q5XUX0 539 aaPredicted RBP8.93□□□□□ -0.98
HMGB1P20-201ENST00000402555 WASHC2CQ9Y4E1 1318 aa8.93□□□□□ -0.98
HMGB1P20-201ENST00000402555 KIF15Q9NS87 1388 aa8.93□□□□□ -0.98
HMGB1P20-201ENST00000402555 SHANK2Q9UPX8 1470 aa8.93□□□□□ -0.98
HMGB1P20-201ENST00000402555 KDM5DQ9BY66 1539 aa8.93□□□□□ -0.98
HMGB1P20-201ENST00000402555 STRCQ7RTU9 1775 aa8.92□□□□□ -0.98
HMGB1P20-201ENST00000402555 MROH1Q8NDA8 1641 aa8.92□□□□□ -0.98
HMGB1P20-201ENST00000402555 MYO3AQ8NEV4 1616 aa8.92□□□□□ -0.98
HMGB1P20-201ENST00000402555 RNF17Q9BXT8 1623 aaKnown RBP8.92□□□□□ -0.98
HMGB1P20-201ENST00000402555 DUOX2Q9NRD8 1548 aa8.92□□□□□ -0.98
HMGB1P20-201ENST00000402555 EIF2AK4Q9P2K8 1649 aaKnown RBP8.91□□□□□ -0.98
HMGB1P20-201ENST00000402555 ILDR1Q86SU0 546 aaPredicted RBP8.91□□□□□ -0.98
HMGB1P20-201ENST00000402555 PROM2Q8N271 834 aa8.91□□□□□ -0.98
HMGB1P20-201ENST00000402555 CREBZFQ9NS37 354 aa8.91□□□□□ -0.98
HMGB1P20-201ENST00000402555 ABCC3O15438 1527 aa8.9□□□□□ -0.98
HMGB1P20-201ENST00000402555 PZPP20742 1482 aa8.9□□□□□ -0.98
HMGB1P20-201ENST00000402555 CEP152O94986 1710 aa8.9□□□□□ -0.98
HMGB1P20-201ENST00000402555 CEP170BQ9Y4F5 1589 aaPredicted RBP8.9□□□□□ -0.99
HMGB1P20-201ENST00000402555 FAM135AQ9P2D6 1515 aa8.9□□□□□ -0.99
HMGB1P20-201ENST00000402555 TNRQ92752 1358 aa8.89□□□□□ -0.99
HMGB1P20-201ENST00000402555 ANKRD30AQ9BXX3 1397 aa8.89□□□□□ -0.99
HMGB1P20-201ENST00000402555 ZNF142P52746 1687 aaPredicted RBP8.89□□□□□ -0.99
HMGB1P20-201ENST00000402555 CAMSAP1Q5T5Y3 1602 aa8.89□□□□□ -0.99
HMGB1P20-201ENST00000402555 NCOA1Q15788 1441 aa8.88□□□□□ -0.99
HMGB1P20-201ENST00000402555 ERBINQ96RT1 1412 aa8.88□□□□□ -0.99
HMGB1P20-201ENST00000402555 CFAP65Q6ZU64 1925 aaKnown RBP8.88□□□□□ -0.99
HMGB1P20-201ENST00000402555 ZC3H13Q5T200 1668 aaKnown RBP8.88□□□□□ -0.99
HMGB1P20-201ENST00000402555 NCKAP5LQ9HCH0 1330 aa8.87□□□□□ -0.99
HMGB1P20-201ENST00000402555 ITGAEP38570 1179 aa8.87□□□□□ -0.99
HMGB1P20-201ENST00000402555 A2ML1A8K2U0 1454 aa8.87□□□□□ -0.99
HMGB1P20-201ENST00000402555 ADGRL2O95490 1459 aa8.87□□□□□ -0.99
HMGB1P20-201ENST00000402555 PRDM15P57071 1507 aaPredicted RBP8.86□□□□□ -0.99
HMGB1P20-201ENST00000402555 GABBR2O75899 941 aa8.86□□□□□ -0.99
HMGB1P20-201ENST00000402555 CD44P16070 742 aaKnown RBP8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms