RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 TSPY4P0CV99 314 aa45.22■■■■■ 4.83
HMGB1-205ENST00000399494 TSPY10P0CW01 314 aa45.22■■■■■ 4.83
HMGB1-205ENST00000399494 ARHGEF5Q12774 1597 aa45.2■■■■■ 4.83
HMGB1-205ENST00000399494 VPS8Q8N3P4 1428 aa45.2■■■■■ 4.83
HMGB1-205ENST00000399494 LRRC9Q6ZRR7 1453 aa45.19■■■■■ 4.82
HMGB1-205ENST00000399494 WASHC2CQ9Y4E1 1318 aa45.19■■■■■ 4.82
HMGB1-205ENST00000399494 DNMT1P26358 1616 aaKnown RBP45.18■■■■■ 4.82
HMGB1-205ENST00000399494 TNRQ92752 1358 aa45.16■■■■■ 4.82
HMGB1-205ENST00000399494 KDM5DQ9BY66 1539 aa45.16■■■■■ 4.82
HMGB1-205ENST00000399494 FAM135AQ9P2D6 1515 aa45.15■■■■■ 4.82
HMGB1-205ENST00000399494 PZPP20742 1482 aa45.14■■■■■ 4.82
HMGB1-205ENST00000399494 DISP3Q9P2K9 1392 aa45.12■■■■■ 4.81
HMGB1-205ENST00000399494 KANK4Q5T7N3 995 aaPredicted RBP45.1■■■■■ 4.81
HMGB1-205ENST00000399494 MIA2Q96PC5 1412 aa45.03■■■■■ 4.8
HMGB1-205ENST00000399494 UBAP1LF5GYI3 381 aa45.02■■■■■ 4.8
HMGB1-205ENST00000399494 MAP3K1Q13233 1512 aa45.01■■■■■ 4.8
HMGB1-205ENST00000399494 ILDR2Q71H61 639 aa45■■■■■ 4.79
HMGB1-205ENST00000399494 MAST1Q9Y2H9 1570 aa44.98■■■■■ 4.79
HMGB1-205ENST00000399494 THEMISQ8N1K5 641 aaPredicted RBP44.96■■■■■ 4.79
HMGB1-205ENST00000399494 ANKLE2Q86XL3 938 aa44.94■■■■■ 4.78
HMGB1-205ENST00000399494 NEURL4Q96JN8 1562 aa44.94■■■■■ 4.78
HMGB1-205ENST00000399494 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP44.94■■■■■ 4.788e-9■■■□□ 17.4
HMGB1-205ENST00000399494 NLRP1Q9C000 1473 aa44.93■■■■■ 4.78
HMGB1-205ENST00000399494 MYOM3Q5VTT5 1437 aa44.92■■■■■ 4.78
HMGB1-205ENST00000399494 RNF17Q9BXT8 1623 aaKnown RBP44.91■■■■■ 4.78
HMGB1-205ENST00000399494 POLR1AO95602 1720 aaPredicted RBP44.91■■■■■ 4.78
HMGB1-205ENST00000399494 UGGT1Q9NYU2 1555 aa44.86■■■■■ 4.77
HMGB1-205ENST00000399494 ABCC3O15438 1527 aa44.85■■■■■ 4.77
HMGB1-205ENST00000399494 SPATA31D1Q6ZQQ2 1576 aa44.82■■■■■ 4.77
HMGB1-205ENST00000399494 SHANK2Q9UPX8 1470 aa44.82■■■■■ 4.77
HMGB1-205ENST00000399494 EIF2AK4Q9P2K8 1649 aaKnown RBP44.82■■■■■ 4.77
HMGB1-205ENST00000399494 ZC3H13Q5T200 1668 aaKnown RBP44.79■■■■■ 4.76
HMGB1-205ENST00000399494 CPS1P31327 1500 aa44.78■■■■■ 4.76
HMGB1-205ENST00000399494 MED14O60244 1454 aa44.78■■■■■ 4.76
HMGB1-205ENST00000399494 MROH1Q8NDA8 1641 aa44.77■■■■■ 4.76
HMGB1-205ENST00000399494 NPHP4O75161 1426 aaPredicted RBP44.75■■■■■ 4.75
HMGB1-205ENST00000399494 DEPDC5O75140 1603 aa44.74■■■■■ 4.75
HMGB1-205ENST00000399494 DUOX2Q9NRD8 1548 aa44.74■■■■■ 4.75
HMGB1-205ENST00000399494 ERVK-7P63135 1459 aa44.72■■■■■ 4.75
HMGB1-205ENST00000399494 SOCS7O14512 581 aa44.72■■■■■ 4.75
HMGB1-205ENST00000399494 VWDEQ8N2E2 1590 aa44.7■■■■■ 4.75
HMGB1-205ENST00000399494 ABCC5O15440 1437 aa44.67■■■■■ 4.74
HMGB1-205ENST00000399494 TOM1O60784 492 aa44.67■■■■■ 4.74
HMGB1-205ENST00000399494 APLP2Q06481 763 aa44.66■■■■■ 4.74
HMGB1-205ENST00000399494 RRP7BPQ9NSQ0 103 aa44.65■■■■■ 4.74
HMGB1-205ENST00000399494 KIF15Q9NS87 1388 aa44.65■■■■■ 4.74
HMGB1-205ENST00000399494 CEP152O94986 1710 aa44.64■■■■■ 4.74
HMGB1-205ENST00000399494 PIP4K2BP78356 416 aa44.62■■■■■ 4.73
HMGB1-205ENST00000399494 SCAF1Q9H7N4 1312 aaKnown RBP44.6■■■■■ 4.73
HMGB1-205ENST00000399494 IQGAP1P46940 1657 aa44.59■■■■■ 4.73
HMGB1-205ENST00000399494 PTPN23Q9H3S7 1636 aa44.59■■■■■ 4.73
HMGB1-205ENST00000399494 CFAP65Q6ZU64 1925 aaKnown RBP44.59■■■■■ 4.73
HMGB1-205ENST00000399494 HSPA1LP34931 641 aa44.58■■■■■ 4.73
HMGB1-205ENST00000399494 ERBINQ96RT1 1412 aa44.58■■■■■ 4.73
HMGB1-205ENST00000399494 ARHGAP31Q2M1Z3 1444 aa44.56■■■■■ 4.72
HMGB1-205ENST00000399494 CROCC2H7BZ55 1655 aa44.55■■■■■ 4.72
HMGB1-205ENST00000399494 DAPK1P53355 1430 aa44.54■■■■■ 4.72
HMGB1-205ENST00000399494 PRDM15P57071 1507 aaPredicted RBP44.53■■■■■ 4.72
HMGB1-205ENST00000399494 UBR1Q8IWV7 1749 aa44.52■■■■■ 4.72
HMGB1-205ENST00000399494 GRWD1Q9BQ67 446 aaKnown RBP eCLIP44.51■■■■■ 4.722e-7■■□□□ 14.5
HMGB1-205ENST00000399494 FGD6Q6ZV73 1430 aa44.5■■■■■ 4.71
HMGB1-205ENST00000399494 LTKP29376 864 aa44.47■■■■■ 4.71
HMGB1-205ENST00000399494 STRCP1A6NGW2 1772 aa44.46■■■■■ 4.71
HMGB1-205ENST00000399494 TXNDC2Q86VQ3 553 aa44.44■■■■■ 4.7
HMGB1-205ENST00000399494 CHIC2Q9UKJ5 165 aa44.44■■■■■ 4.7
HMGB1-205ENST00000399494 ALKQ9UM73 1620 aa44.43■■■■■ 4.7
HMGB1-205ENST00000399494 SCAF11Q99590 1463 aaKnown RBP44.43■■■■■ 4.7
HMGB1-205ENST00000399494 ARHGAP23Q9P227 1491 aa44.43■■■■■ 4.7
HMGB1-205ENST00000399494 LRRC7Q96NW7 1537 aa44.43■■■■■ 4.7
HMGB1-205ENST00000399494 SLIT1O75093 1534 aa44.4■■■■■ 4.7
HMGB1-205ENST00000399494 KANK1Q14678 1352 aa44.4■■■■■ 4.7
HMGB1-205ENST00000399494 ANKRD30AQ9BXX3 1397 aa44.39■■■■■ 4.7
HMGB1-205ENST00000399494 EID1Q9Y6B2 187 aa44.33■■■■■ 4.69
HMGB1-205ENST00000399494 LMTK2Q8IWU2 1503 aa44.3■■■■■ 4.68
HMGB1-205ENST00000399494 PIK3C2BO00750 1634 aa44.29■■■■■ 4.68
HMGB1-205ENST00000399494 IDI1Q13907 227 aa44.29■■■■■ 4.68
HMGB1-205ENST00000399494 SYNMO15061 1565 aa44.29■■■■■ 4.68
HMGB1-205ENST00000399494 TMEM2Q9UHN6 1383 aa44.28■■■■■ 4.68
HMGB1-205ENST00000399494 STAG3Q9UJ98 1225 aa44.26■■■■■ 4.68
HMGB1-205ENST00000399494 MED1Q15648 1581 aaPredicted RBP44.25■■■■■ 4.67
HMGB1-205ENST00000399494 ADGRL2O95490 1459 aa44.19■■■■■ 4.66
HMGB1-205ENST00000399494 FAM50AQ14320 339 aaKnown RBP44.17■■■■■ 4.66
HMGB1-205ENST00000399494 KDM5AP29375 1690 aaKnown RBP44.16■■■■■ 4.66
HMGB1-205ENST00000399494 NOS1P29475 1434 aa44.16■■■■■ 4.66
HMGB1-205ENST00000399494 EFCAB6Q5THR3 1501 aa44.16■■■■■ 4.66
HMGB1-205ENST00000399494 SENP3Q9H4L4 574 aaPredicted RBP44.12■■■■■ 4.65
HMGB1-205ENST00000399494 SLC52A1Q9NWF4 448 aa44.09■■■■■ 4.65
HMGB1-205ENST00000399494 XIRP1Q702N8 1843 aaKnown RBP44.08■■■■■ 4.65
HMGB1-205ENST00000399494 ANKRD50Q9ULJ7 1429 aa44.06■■■■■ 4.64
HMGB1-205ENST00000399494 TET3O43151 1660 aa44.04■■■■■ 4.64
HMGB1-205ENST00000399494 KCNA6P17658 529 aa44.04■■■■■ 4.64
HMGB1-205ENST00000399494 SLC26A8Q96RN1 970 aa44.04■■■■■ 4.64
HMGB1-205ENST00000399494 ADGRB3O60242 1522 aa43.99■■■■■ 4.63
HMGB1-205ENST00000399494 RPRD2Q5VT52 1461 aaKnown RBP43.98■■■■■ 4.63
HMGB1-205ENST00000399494 PHF23Q9BUL5 403 aaPredicted RBP43.98■■■■■ 4.63
HMGB1-205ENST00000399494 TMEM94Q12767 1356 aa43.97■■■■■ 4.63
HMGB1-205ENST00000399494 PROSER2Q86WR7 435 aaPredicted RBP43.93■■■■■ 4.62
HMGB1-205ENST00000399494 FAM135BQ49AJ0 1406 aa43.91■■■■■ 4.62
HMGB1-205ENST00000399494 RBM33Q96EV2 1170 aaKnown RBP43.88■■■■■ 4.62
HMGB1-205ENST00000399494 BCANQ96GW7 911 aa43.87■■■■■ 4.61
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms